nalf2 (fam155b,LOC107548493,LOC107746345,LOC107655916,LOC107596158,LOC107757536)


Basic Information

Item Value
gene id nalf2
gene name fam155b,LOC107548493,LOC107746345,LOC107655916,LOC107596158,LOC107757536
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 13334755 ~ 13338138 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238511.1
ttttaactattatttttacttcagtagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatttttttaaggATGGAAATGACCGGAGGACGTTTAGTCTATATATTTCCTCACGCACACTGCCCCTCCACGCTCGTAACCGGGATCTGTGTGTCTAGCCGAGCAAGGCGAGCGGGGTGATTCCTCGCGGGGTGGGGTGGGCAACAATGCGCGCTGCTGAACTGAATGGTGAGCGCATAGTGAATGAAGTTTCAATGGAGGAGGCAAGGATACGCGCGACAGCGCACGCGCCACACCCCCGCCTTCAATTAAAACATCTCAGGGTTCGTCTGAGTGCGAGCGAAGATGGCGACAGAGTGAAGGAGACCACGGAAAGATGACAAGCCCcctacagacagacaaacacgcACGAGCTCTTCGCCCCGCCGCCTCAGAGATGCCCGTGAATGAGTAAGAAGCGGCTGCGTACGATGTGTTGTCAAGGAGATGCGGGGTAGGTGATGGAGTCTCGCGGCATGTGCTTTATCATGCACTGTCTCGGTAATTTAGACGCAGGTGTTTGCAGTGCGGCTTGATTTTGAGCAGCAGGTGAAAGGGACGCTTCGAGCCATCATGTAAACGTCGCGGTGGGGAATATTGCGGAGGAGACCCGCCCGTGTGAGCTCGCGCTTTGTCTCCCCCTCTAAAATATGATCACGGGCGCCTGGCGCTGTGGAAGGAAACTTGACGCCGAGTTAGAAATCTGCCGCGTTACCGAATCCATCGACAAACCGTGCGCGGAGCCGGAGAAGGTGCAGAGATGGCGCATGAGCCTCGCGTCGCTGCTCTTTTTCACGGCGTTGCTGTCAGATCACCTCTGGCTCTGCGCGGGAGGCAAGCTCCGCTCGAGAGACCGGACTCACCGGAGGACGTGGAGCAACGCGAGTCACGACGCCCAGACGGGCCTTCGCGATGAGGACTGCGGGGTTCTTTTGAGCAATCTGACGGAAAACGGGCCAAAGTGCGTGGAGGCTGACGCGCGACGTCGCGCGCCTCTGGAGTCCGCTTGCTCCACTCTTTACCGGCAAAAGAGCGGCTTGGTGAGCTCCTCCTATTCTGTGCCGGTGCCCACGGTGTCGCCACACGCGTTTTTGGAGTACTTCCGGAACTTGAGCTTGTCATTTTGCGACGCGCTCACAATAGCGGACCTACTAGAGAGCATGACCGGTCCTGACGGGCTCAACTGCAGTCTGAAGCGTGTCATTCGTGACCTGTTCAGCGGCGGACCGGAGGACGGGGACCTGTGCAGCGCTTGTGTTCACGCGTACATCCGACTCGACCAACACGCTCAGGAAAAATATGAGGAGTTTCAAGTCCTTACGCGCAAATTCATGGCGGATGACTACTCAGTGCGCGCGCAAACACACCTGTGTCAGGCAGTGTACAAAGCCTGGCTCTGTGCAGAATATTTTCCGGTTCCTCAGCGGCAGTGTGTGAGGTGGCTTCCGTGCAGACACTACTGCGGTGAGGTCACAGCCAGCTGCCCCTTCATCTTACCTGACAATGACCACCTGCTGTATGCCGGTCTGCCGAGCTTTCTCTGTGCAGGGTTTCACGAAGAGTACTTGACCAATCAGGGTCCAGACTGCTGTGATGTCAGATGGAGTGGGTGTGACTCTACTGTCGGCGCCGCATGTGCTCTGACACGCCTCCCCGGCTCCTTCTCTTTGAATAGGAGGTTATCATCAGGAGCGCTGTCATGTACAAATCGTCTTCATGGCAGTAAATTGAAACTGTGTGTGCTTGTTCTCTTCTTACTACACACTGTTATCTCCATAACAACATTGCAGCATTGCAGCACCGGCTCTTTGGAGGCAATAGTACCTCTAGAAGATGTTCCCATGAGAGAAGAGTAAAAGACTGGAACATCTCCCTCTTTATTGGAAGACACACACGCGGTGAAAGCGTTTTTGTCTGCTGTGCATGAGACGAACCAAATGCCTGGAAAACACAGGAAGTCTTGCCACCGCTGAAGCGCCTGTGCCTGTCTTTTTCGAGGGTTTGAACACCTGGCTTGATATGAgcgtgcatgtttgtgtgagtgagcgagcgagcgagcaaGTGAGTAagtgaatgaatgtttttacctgtttttcagtgtttcatttgttttatctgGACTAACTGCACATGTTAAAacccttgttttgttttagacaACATTCCTCGAAACAAAAACTAATGTACGAAGAATGAATGACATTGTTACATTTCTCCTCTAATAAAACCGACTCTATTGgagacatttttcata

Function

symbol description
fam155b Predicted to contribute to stretch-activated, cation-selective, calcium channel activity. Predicted to be involved in calcium ion import across plasma membrane. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to human NALF2 (NALCN channel auxiliary factor 2).

NR:

description
PREDICTED: transmembrane protein FAM155A-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238511.1 True 2332 mRNA 0.52 3 13334755 13338138

Neighbor

gene id symbol gene type direction distance location
steep1 zgc:103697,cunhxorf56,LOC107548454,LOC107655899,LOC101478835 coding upstream 177518 13151621 ~ 13157237 (+)
stard8 LOC107757534,LOC107596160,LOC107548495,LOC107746344,LOC107700913 coding upstream 227183 13066436 ~ 13107572 (+)
yipf6 yipf6,LOC107596694,LOC107746343,LOC107757533,LOC107596161,LOC107655918 coding upstream 278395 13051667 ~ 13056360 (+)
ar ar,LOC107757532,LOC107596701 coding upstream 311982 12965936 ~ 13022773 (+)
ch25hl3 LOC107700893,LOC107718661,LOC107597898,LOC107596167,LOC107655924,LOC107757531,LOC100005337 coding upstream 399603 12930223 ~ 12935152 (+)
eda eda coding downstream 4008 13342146 ~ 13372469 (+)
wnt11f2 wnt11,LOC107746349,LOC107548453,LOC107655896,LOC107596154,LOC107757514,LOC107700898 coding downstream 38399 13376537 ~ 13379768 (+)
igbp1 LOC107746347,LOC107700909,LOC107548490,LOC107655913,LOC107757539 coding downstream 45074 13383212 ~ 13387955 (+)
micu2 LOC107700905,LOC107746354,LOC107596152,LOC107655910,LOC107757544,LOC107548488 coding downstream 74482 13412620 ~ 13418968 (+)
nova1 nova1,LOC107757545,LOC107655909,LOC107700904,LOC107746355,LOC107548487,LOC103377877 coding downstream 81218 13419356 ~ 13437936 (+)
G36109 NA non-coding upstream 10372 13324033 ~ 13324383 (+)
LOC122345423 NA non-coding upstream 22103 13299755 ~ 13312652 (+)
G36062 NA non-coding upstream 225902 13108632 ~ 13108853 (+)
G35905 NA non-coding upstream 448821 12885331 ~ 12885934 (+)
G35904 NA non-coding upstream 449471 12885005 ~ 12885284 (+)
G36140 NA non-coding downstream 181835 13519973 ~ 13521608 (+)
G36141 NA non-coding downstream 228839 13566977 ~ 13580798 (+)
G36168 NA non-coding downstream 309788 13647926 ~ 13648538 (+)
G36191 NA non-coding downstream 382647 13720785 ~ 13721566 (+)
G36198 NA non-coding downstream 393831 13731969 ~ 13732456 (+)
LOC122346073 LOC107654625,LOC107597279,LOC107741224,LOC107696048,LOC107727161 other upstream 527404 12803789 ~ 12807351 (+)
iscu si:ch211-191d15.2,iscu,LOC107597282,LOC104937683 other upstream 629510 12703352 ~ 12705245 (+)
si:ch211-225b11.4 si:ch211-225b11.4,LOC107743340,LOC107597327,LOC107654601,LOC107580265,LOC107735986 other upstream 805965 12514013 ~ 12528790 (+)
G35720 LOC107654642,LOC107597266,LOC107743332,LOC107741203,LOC107557123,LOC107663229 other upstream 1079083 12249138 ~ 12255672 (+)
smarca1 smarca1,LOC107597262,LOC107672796,LOC107741199,LOC107663213,LOC103034185,LOC105028962,LOC105893234,LOC106603320 other upstream 1391645 11924228 ~ 11943110 (+)
ins ins,LOC107596207 other downstream 645959 13984097 ~ 13985706 (+)
G36495 NA other downstream 952282 14290420 ~ 14292500 (+)
LOC122345142 NA other downstream 961905 14300043 ~ 14305304 (+)
LOC122345214 NA other downstream 994885 14333023 ~ 14337765 (+)
mrpl1 LOC107663378,LOC107746869,LOC107752362,LOC107599195 other downstream 1009424 14347562 ~ 14349991 (+)

Expression


Co-expression Network