gjb1a (cx27.5,LOC107597344,LOC107687661,LOC107592389,LOC107680359,LOC107732608,LOC105893222)


Basic Information

Item Value
gene id gjb1a
gene name cx27.5,LOC107597344,LOC107687661,LOC107592389,LOC107680359,LOC107732608,LOC105893222
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 11193469 ~ 11197204 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238517.1
GTTGCTGCAAGCTGGAGACACTCCATCTGACAGaagtacacacatacagacacacacacacacacacacaccggagaCACGGCGGGTCTCAGAACCCCTCTACACGGGCTCTGCCCATGCCACTAACACCACCTGCGGAGCCTGATCTGGAACCAAAAATGAACTGGGCGTCTTTTTATGCCGTGATCAGCGGCGTGAACCGGCATTCCACCGGCATTGGGCGGATTTGGCTGTCTGTCCTCTTCATTTTCCGGATCCTGGTTCTGGTGGTGGCGGCGGAGAGCGTGTGGGGCGATGAGAAAGCCCACTTCATCTGCAACACCCAGCAGCCCGGTTGCAACAGCGTCTGTTACGACCATTTCTTCCCCATCTCTCACATCCGACTGTGGGCGCTGCAGCTCATCATGGTCTCTACCCCGGCCCTGCTGGTCGCCATGCACATTGCACACCGCCGGCATATCGACAAAAAATTGTATCGCCAAGCTGGTCGCACCAGTCCGAAAGACTTAGAGCAGATAAAAAACCAAAAGATGAAGATTACTGGCGCACTTTGGTGGACGTACATGATTAGCCTGCTGTTCCGTGTGTTATTCGAATCCGCCTTTATGTATCTGTTCTACATGATTTACCCAGGATACAAAATGTTTCGGCTGGTAAAGTGTGACTCGTACCCGTGTCCAAACATAGTCGACTGCTTTGTGTCCCGACCGACAGAGAAAACAGTGTTCACTATCTTCATGCTGGCGGTGTCCGGCGTATGCATCCTGCTCAACATCGCAGAAATCGTCTTTCTTGTCGCGAGAGCAACTAGTCGCCATCTCAATAACTCCAAGGATTCCCCAGTAGGAGCCTGGATCTCCCAGAAACTGTGCTCCTTTTAGAAGCGCTGGTCATCTCACTCTCTGAAAGCtaaatatttcactcaaacaCCTAATGTTCAAGAGGGctaatgccattttaaaattttatttgataacTTAAAATGTGTACTCcacatttattgaaataaattcacACTGCTGTATGTAATGTTCTACTCATATTGTCTCTAAAAATAGGCTACTacaacagtaaaataaaattgtaatatttgtggTAGAATCTTTGTTTGATAAATATCTGTTTGATGACAAAGATTAGATTTAACGCATTTTGTTTGGCAAATGTCAAGAAAAAGTAGTTTGCAAGAAAGACGTTCCAACTGTTCCAATTTATTCATCAGCTGTAGGCTACTTCATTATCTTGTAGCCTAGCTCGGCAAACTGGGTTCcaaaagtcataattatttcagtttatttaaatgatatactGTTTActaacataacataaacattaacataaacttaactgaaaatgctaaaacactaaaaaaaataaagatgtaca
>XM_043238519.1
AGTGGGGTGAGTAACAGCGTGACACGAGTGATTAGCAATGCAAAGCTCCGGTACTGCGCCATAATCTGCACTGGGGAAACATCAACCCTTTCCTGTGCGACTTCAACCTCTTCTTCTGCTCAGGGACCTCACCAACCGCAGATCTGGAACCAAAAATGAACTGGGCGTCTTTTTATGCCGTGATCAGCGGCGTGAACCGGCATTCCACCGGCATTGGGCGGATTTGGCTGTCTGTCCTCTTCATTTTCCGGATCCTGGTTCTGGTGGTGGCGGCGGAGAGCGTGTGGGGCGATGAGAAAGCCCACTTCATCTGCAACACCCAGCAGCCCGGTTGCAACAGCGTCTGTTACGACCATTTCTTCCCCATCTCTCACATCCGACTGTGGGCGCTGCAGCTCATCATGGTCTCTACCCCGGCCCTGCTGGTCGCCATGCACATTGCACACCGCCGGCATATCGACAAAAAATTGTATCGCCAAGCTGGTCGCACCAGTCCGAAAGACTTAGAGCAGATAAAAAACCAAAAGATGAAGATTACTGGCGCACTTTGGTGGACGTACATGATTAGCCTGCTGTTCCGTGTGTTATTCGAATCCGCCTTTATGTATCTGTTCTACATGATTTACCCAGGATACAAAATGTTTCGGCTGGTAAAGTGTGACTCGTACCCGTGTCCAAACATAGTCGACTGCTTTGTGTCCCGACCGACAGAGAAAACAGTGTTCACTATCTTCATGCTGGCGGTGTCCGGCGTATGCATCCTGCTCAACATCGCAGAAATCGTCTTTCTTGTCGCGAGAGCAACTAGTCGCCATCTCAATAACTCCAAGGATTCCCCAGTAGGAGCCTGGATCTCCCAGAAACTGTGCTCCTTTTAGAAGCGCTGGTCATCTCACTCTCTGAAAGCtaaatatttcactcaaacaCCTAATGTTCAAGAGGGctaatgccattttaaaattttatttgataacTTAAAATGTGTACTCcacatttattgaaataaattcacACTGCTGTATGTAATGTTCTACTCATATTGTCTCTAAAAATAGGCTACTacaacagtaaaataaaattgtaatatttgtggTAGAATCTTTGTTTGATAAATATCTGTTTGATGACAAAGATTAGATTTAACGCATTTTGTTTGGCAAATGTCAAGAAAAAGTAGTTTGCAAGAAAGACGTTCCAACTGTTCCAATTTATTCATCAGCTGTAGGCTACTTCATTATCTTGTAGCCTAGCTCGGCAAACTGGGTTCcaaaagtcataattatttcagtttatttaaatgatatactGTTTActaacataacataaacattaacataaacttaactgaaaatgctaaaacactaaaaaaaataaagatgtaca

Function

NR:

description
gap junction beta-1 protein isoform X1

GO:

id name namespace
GO:0007154 cell communication biological_process
GO:0005922 connexin complex cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K07620 GJB1, CX32; gap junction beta-1 protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238517.1 True 1386 mRNA 0.44 2 11193469 11195839
XM_043238519.1 False 1383 mRNA 0.44 2 11193469 11197204

Neighbor

gene id symbol gene type direction distance location
gja2 cx39.9,LOC107597224,LOC107687660,LOC107747814,LOC107732602,LOC107680361,LOC107592390 coding downstream 1211 11189333 ~ 11192258 (-)
ercc6l ercc6l,LOC107687665,LOC107726361,LOC107592361 coding downstream 122700 11064771 ~ 11070769 (-)
ctdnep1a ctdnep1,LOC107672750,LOC107744461,LOC107599947,LOC107687669,LOC106577558 coding downstream 174627 11013727 ~ 11018842 (-)
gabarapa gabarapa,gabarap,LOC107687670,LOC107744462,LOC107592288,LOC107599946,LOC107726389 coding downstream 181059 11010320 ~ 11012410 (-)
gps2 gps2,LOC107687671,LOC107726390,LOC107592289,LOC107672761 coding downstream 183517 11004834 ~ 11009952 (-)
kat5a kat5a,LOC107597226,LOC107592273,LOC107680373,LOC107732605,LOC107687657 coding upstream 7274 11204478 ~ 11209441 (-)
si:dkey-125i10.3 NA coding upstream 133785 11330989 ~ 11336101 (-)
agtr2 LOC107672423,LOC107597233,LOC107733228,LOC107680405,LOC107592269,LOC107732613 coding upstream 140662 11337866 ~ 11345096 (-)
tpcn1 tpcn1,LOC107732611,LOC107733226,LOC107672457,LOC107680394 coding upstream 151424 11348628 ~ 11361935 (-)
cfap73 LOC107680393,LOC107732615,LOC107592352,LOC107592387,LOC107578638 coding upstream 167874 11365078 ~ 11368614 (-)
G35479 LOC107687695,LOC107597222,LOC107680408,LOC107732624,LOC107592391,LOC107687664 non-coding downstream 42697 11145973 ~ 11150772 (-)
G35441 LOC107747818,LOC107680407,LOC107687663 non-coding downstream 69122 11102653 ~ 11124347 (-)
G35467 NA non-coding downstream 74242 11115010 ~ 11119227 (-)
G35423 NA non-coding downstream 129022 11062900 ~ 11064447 (-)
G35422 map7d2a,LOC107754729,LOC107687666,LOC107599951,LOC107726367 non-coding downstream 130581 11060938 ~ 11062888 (-)
G35501 fam76b,LOC107680374,LOC107592275,LOC107687655,LOC107597227 non-coding upstream 14835 11212039 ~ 11213737 (-)
G35499 NA non-coding upstream 22764 11219968 ~ 11220891 (-)
G35450 NA non-coding upstream 51995 11249199 ~ 11250006 (-)
G35434 NA non-coding upstream 107077 11304281 ~ 11330366 (-)
G35522 NA non-coding upstream 114345 11311549 ~ 11312830 (-)
slc25a15b slc25a15b,LOC107744499,LOC107687678,LOC107599942,LOC107726376,LOC107672737 other downstream 224351 10960311 ~ 10969118 (-)
G35384 NA other downstream 267306 10923927 ~ 10926163 (-)
G35371 znf703,LOC107599934,LOC107672788,LOC107744445,LOC107687685,LOC107726392,LOC107592299 other downstream 319405 10868364 ~ 10874064 (-)
G35122 NA other downstream 731760 10461208 ~ 10461709 (-)
si:dkey-96l17.6 si:dkey-96l17.6,LOC107672751,LOC107738297,LOC107592400,LOC107744487,LOC108434467,LOC105902719 other downstream 858126 10324959 ~ 10335343 (-)
hmgn7 hmgn7,LOC107672554,LOC107756557,LOC107680402,LOC107565427,LOC107748629,LOC107597243,LOC108260037,LOC108442050 other upstream 222751 11419955 ~ 11467122 (-)
G35554 LOC100304549,LOC100219516,LOC106514001,LOC103353280 other upstream 386576 11583780 ~ 11652627 (-)
msna msna,msn,moes,LOC107746233,LOC107597256,LOC107672695,LOC107663223,LOC107741191 other upstream 598452 11795656 ~ 11815944 (-)
sh2d1aa sh2d1aa,LOC107713049,LOC107741293,LOC107663232,LOC107557102 other upstream 968199 12165403 ~ 12169410 (-)
G35825 tenm1,LOC107557119,LOC107713050,LOC107597323,LOC107741271 other upstream 1120599 12317803 ~ 12319685 (-)

Expression


Co-expression Network