rabepk (rabepk,LOC107743065,LOC107579283)


Basic Information

Item Value
gene id rabepk
gene name rabepk,LOC107743065,LOC107579283
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 30831189 ~ 30835734 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238521.1
TAGACTGTCATCGCGGTAGCAGTTTTCACAAAACAGCGCTCTCTTCCTTGCTCTGTCGGTCGGTGTAGAGCTCGTCCAACCCGTCCTTCATCGATCATAACGTTTATTAATAAAGAGTATAAAGTCCTGGATGATGATCTGAAGATCTCAGACTGATGGAGCTGCTGCCCGTTCTGGAGCCGGAGGAGCGGCCCAAGAGCAGACAGTGGTACGTGGTGGTGCCCGGTGGAGCCGGTCCTGCCGTTTCTGTGGGTCACACCTGCACTTTTCGGCCCTCCGGCGATGCAGGAAAGGGGCGGATTGTAATCGTCGGTGGAGCCAATCCGGACGGCAGCTTCTCTGACTCTTACATTATCAATCTAGATACTCATGAATGGGATATTCCAGACTGGGACGGGCTGCAGGCGCGCTACGAACACTGCAGCTTTGTTCCCGAGAGCGACCCGCAGAGTCTGTGGGTGTTTGCCGGAGCCGAGAAGAGCGGGAACCGCAACTGTGTTCAAGTGTTGCGCACGGCAGCTGATGCCGAAGGCCGCGGTTCGTGGCGGACGGTTCAGGTGAAAGGAACGGCTCCGACGGTCAGGACGTACCACACCAGCTCGGCCTGCGTCGGAGACAGACTCTACGTGTTTTCTGGAGGAGACGCCGGAGCGTCGCCCGTCGCTGATCCTCAGCTCCACGTCTTCGATACGGtcAGCGTGACGTGGCTGCAGCCGGAGAGCAGAGGAAGTCCTCCCGCGCCGAGGCACGGTCACGTGATCACCGCCGTCGGCTCCCACGTCTACATACACGGAGGAATGGCTGGAGACAAGTTCCACAGCGACATGTTCCTGCTCAACACCGAAACGATGAAATGGGAGAAGGTTAGAACTAAAGGAGACGTACCGCCAGGCGTAGCAGGTCATTCATCCATTACCTTCGGGAAAAGCATCTTCATCTTTGGAGGAATGACAGCCGACGGAGCCACAAACGCCATGTATAAGTTTCAGTGCGACAAACAGCGCTGGACGCGGCTGAGGTTCGACGGAGATCTTCCTCCGAGCAGACTGGATCACTCCATGTGTTTAGTGCCGTGGCGCGTGAAGACACCTGAAGAAGACGCAGCTCAGTCACGTGACGCAGACGTGGAGCACCTGTGCTTCATCTTCGGAGGGATGGACACTCAGGGCGTCATATTCAACGACTGCCTCGTTACTGTGCTCACATGAACGCTCAACTAGTTAAACTGTTAAAGATTCGATTTCCTGACAATCCCTTGATCCTGAAActgttttcagctttaaaaCGATTAAACTAGCTACTGTAATTGTTCACCGTGTGTTTGGTAATGAGTTGATGACAAACAGGAATCTCTGAGGACTTGTTTTTATACTTGTTTGCTTGCTGAATTGCATCAGTGCTTCAATGTAAatgtttcacacaaaaattaaaatgtcaagaaAAACA

Function

symbol description
rabepk Orthologous to human RABEPK (Rab9 effector protein with kelch motifs).

NR:

description
rab9 effector protein with kelch motifs isoform X1

GO: NA

KEGG:

id description
K20285 RABEPK; Rab9 effector protein with kelch motifs

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238521.1 True 1446 mRNA 0.53 8 30831189 30835734

Neighbor

gene id symbol gene type direction distance location
LOC122344907 NA coding downstream 61282 30765631 ~ 30769907 (-)
golga2 golga2,LOC107658391 coding downstream 76249 30734104 ~ 30754940 (-)
ciz1a ciz1a,LOC107687257,LOC107571633,LOC107740230,LOC107689607 coding downstream 159093 30660119 ~ 30672096 (-)
surf2 surf2,LOC107740795,LOC107581206,LOC107743090 coding downstream 175232 30653163 ~ 30655957 (-)
surf4 surf4,LOC107740232,LOC107689610,LOC105890423,LOC103376134 coding downstream 178879 30646286 ~ 30652310 (-)
LOC122344688 LOC107743064,LOC107698017,LOC107734413 coding upstream 85083 30920817 ~ 30941882 (-)
cux2a NA coding upstream 106780 30942514 ~ 30951488 (-)
mcc mcc,LOC106565572 coding upstream 142859 30978593 ~ 31052589 (-)
rcl1 rcl1,LOC107701854,LOC107655287 coding upstream 218190 31053924 ~ 31064355 (-)
LOC122344691 NA coding upstream 238309 31074043 ~ 31081265 (-)
G40739 NA non-coding downstream 59165 30770714 ~ 30772024 (-)
G40708 dnm1,LOC107568151,LOC107658356 non-coding downstream 105963 30720192 ~ 30725226 (-)
LOC122345983 NA non-coding downstream 120511 30708773 ~ 30710678 (-)
G40701 NA non-coding downstream 240549 30590197 ~ 30590640 (-)
G40698 NA non-coding downstream 261089 30567251 ~ 30570100 (-)
G40762 NA non-coding upstream 30509 30866243 ~ 30919600 (-)
G40760 LOC108429729,LOC107563441 non-coding upstream 85117 30920851 ~ 30925197 (-)
LOC122344700 LOC108429729,LOC107563441 non-coding upstream 85444 30921178 ~ 30925197 (-)
LOC122344701 NA non-coding upstream 123710 30959444 ~ 30963507 (-)
LOC122344702 NA non-coding upstream 138584 30974318 ~ 30974883 (-)
G40752 hspa5,LOC107686379,LOC107743071,LOC107687227,LOC107567952,LOC107734417,LOC107734415,LOC107686377 other downstream 4831 30817732 ~ 30826358 (-)
G40713 lzts3,LOC107567954,LOC107687254,LOC107574519,LOC795227,LOC107665914 other downstream 38470 30789633 ~ 30792719 (-)
G40711 NA other downstream 97829 30631028 ~ 30733360 (-)
fubp3 fubp3,LOC107689604,LOC107687236,LOC106566971 other downstream 218048 30590843 ~ 30613141 (-)
rnf170 rnf170,LOC107721034,LOC107687247 other downstream 737613 30087966 ~ 30093576 (-)
LOC122344987 LOC107591496,LOC107663763,LOC107725109,LOC107734348,LOC107563429,LOC107654309 other upstream 495615 31331349 ~ 31350449 (-)
apooa apoo other upstream 866719 31702453 ~ 31711737 (-)
G41035 LOC107734367,LOC107665727,LOC107725151,LOC107591476,LOC107654325,LOC563292 other upstream 885536 31721270 ~ 31722906 (-)
tnca zmp:0000000846,LOC107715542,LOC107557573,LOC107591511,LOC102306937,LOC107725145 other upstream 1278162 32113896 ~ 32174064 (-)
LOC122346090 LOC107704013,LOC107725152,LOC107748063,LOC107654332,LOC107557589,LOC107594564 other upstream 1378297 32214031 ~ 32293782 (-)

Expression


Co-expression Network