LOC122344899 (LOC107663257,LOC107742022,LOC107570120)


Basic Information

Item Value
gene id LOC122344899
gene name LOC107663257,LOC107742022,LOC107570120
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 17258466 ~ 17259947 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238522.1
GAATATTCTTAACACTTTCACATCACAGGAGGGCTTCCATAAAGCCCTGGATCTTGTAGGAGCAGAGTTCAAGGACCGCCTGGATTACTTCATGAAGGCCTGGCTCCCGGCGAGAGAGATTGTGCAGCAAGCTCTTCAGACCAGATATAAGGTGGATCCGAGCggagagctgctgctgctggctcAGGGAGGCTGTCCCTGGAAAGAGCATCTCTTCTCACTGGAGAAGGAGCTGAAGGTGGACGTGCCCATCAAGTTTGTGCTGTACTCGGATCAGAACGGACACTGGAGAGTCCAGTGTGTCCCGGCTGGACTCAACACCTTCCAGAACAGATTGAGTCTTCTGGAGGAATGGCGAGGGGTCCGTGACGAGGCCCTTTCGGATCTGAGCGGGATTCCCGACTGCATCTTCGTCCACGCCAGTGGCTTCATCGGAGGAAACCGGACCCAGGAGGGAGCGCTGGAGATGGCCAAGAGAACCCTGCAGACGGCACCCAGACCTTTATCCAGCTCCTGACCGCTCGCTCACACCAGTACTGCTCTTGTGCTCGTGTTAATGCTTTGGTTTGTATTCACTTTGGAAAATACAGAACTTTACAGAGA

Function

NR:

description
PREDICTED: UPF0160 protein MYG1, mitochondrial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238522.1 True 603 mRNA 0.54 3 17258466 17259947

Neighbor

gene id symbol gene type direction distance location
LOC122344715 vps37b,LOC107673398,LOC107594993,LOC107656485,LOC107587312,LOC107709855,LOC107721558 coding downstream 842461 16413057 ~ 16416005 (-)
si:ch211-204c21.1 LOC107746847,LOC107561610,LOC107680600,LOC107719926,LOC107660265,LOC107553608 coding downstream 1120303 16115390 ~ 16138163 (-)
LOC122346134 LOC107681310 coding downstream 1144042 16095748 ~ 16114424 (-)
mccc2 mccc2,LOC107746845,LOC107680610,LOC107552565,LOC107660263,LOC107553609,LOC107719925 coding downstream 1163129 16089065 ~ 16095337 (-)
smn1 smn1,LOC107660268,LOC107553605,LOC107719932,LOC107681471,LOC107746843,LOC107552536 coding downstream 1171056 16084818 ~ 16087410 (-)
LOC122345238 cfap157,LOC107587652,LOC107672550,LOC107731015 coding upstream 56434 17316381 ~ 17321058 (-)
LOC122344736 apba1,apba1a,LOC107587500,LOC107720269,LOC107756314,LOC107567151 coding upstream 69249 17329196 ~ 17345615 (-)
LOC122345546 LOC107699749,LOC107587493,LOC107756319,LOC107703272,LOC107567144,LOC107720200 coding upstream 94982 17354929 ~ 17359741 (-)
LOC122344712 ckmt2b,ckmt2,LOC107720280 coding upstream 122084 17382031 ~ 17384148 (-)
ccnh ccnh,LOC107753181,LOC107553924,LOC107720191,LOC107660965 coding upstream 326876 17586823 ~ 17592357 (-)
G37340 NA non-coding downstream 93314 17162677 ~ 17165152 (-)
G37310 NA non-coding downstream 367276 16890704 ~ 16891190 (-)
G37309 NA non-coding downstream 368148 16889042 ~ 16890318 (-)
LOC122345772 NA non-coding downstream 399490 16858600 ~ 16858976 (-)
G37294 NA non-coding downstream 430991 16824601 ~ 16827475 (-)
G37363 NA non-coding upstream 91368 17351315 ~ 17352410 (-)
LOC122345155 NA non-coding upstream 386149 17646096 ~ 17686024 (-)
G37427 NA non-coding upstream 408312 17668259 ~ 17692145 (-)
G37439 NA non-coding upstream 632010 17891957 ~ 17893318 (-)
G37453 adgrv1,LOC107669515,LOC107660972 non-coding upstream 686600 17946547 ~ 17946764 (-)
LOC122345693 NA other downstream 398535 16787809 ~ 16859931 (-)
G37277 ncam1a,LOC107681081,LOC107548183,LOC107756101 other downstream 545299 16687260 ~ 16713167 (-)
G37258 ncor2,LOC107687981,LOC107684513,LOC107753125 other downstream 625345 16596855 ~ 16633121 (-)
LOC122344728 uprt,LOC107733222,LOC107672530,LOC107680369,LOC107748634 other downstream 879951 16376266 ~ 16378515 (-)
LOC122344710 LOC107755722,LOC107681456,LOC107700059,LOC107553585,LOC107727439 other downstream 1001474 16253952 ~ 16256992 (-)
LOC122344738 acsl1b,LOC107571490,LOC107678619,LOC107758469,LOC107552354,LOC108274927 other upstream 86522 17346469 ~ 17350380 (-)
mtx3 cmya5,mtx3,LOC107699728,LOC107703257,LOC107720274,LOC107756304,LOC107555495,LOC107756305,LOC107720223,LOC107703259 other upstream 1915516 19175463 ~ 19183978 (-)
kcnt1b LOC107720246,LOC107699766,LOC107672542 other upstream 2605072 19865019 ~ 19935576 (-)
G38058 NA other upstream 2791712 20051659 ~ 20055798 (-)
G38140 si:ch211-236k19.4,LOC107552622,LOC107740829,LOC107699705,LOC107731026,LOC107672535,LOC107587659 other upstream 2865642 20125589 ~ 20127390 (-)

Expression


Co-expression Network