LOC122344907


Basic Information

Item Value
gene id LOC122344907
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 30765631 ~ 30769907 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238534.1
GTCAAAACcatgacatgcacacacagctgCATCCTGGGCATCCGGCGGTGAAGAGATAAACACTCTAGAATCAGTTTAACTCTGTTTCAGTCGAGCCTAAACCTGCTTCTCCTCCCGAGCTGACTGGAGAAGGACGGTGAAAGTCTTCTGGGAAGTGCAGAAATTAAACACCATGGATGACAAGCAGCCAGGTCTTCCACCACGCAGACCAACTCTGATTAATAGAGGTTCTCCTAAACGATTCTGTCtaaacacagagaaaagagtGCTTGATGAATACGGGAAAGTCCAAAAGTGGACTTACGGCGTAAAAGACACCAGCAGGCAAAGCAAAATTGTTCTGCTGGTGGGAGAGACGGGCGCTGGCAAGACGACTCTCATCAACACCATGGTCAACTACATACTGGAAGTGAGGTTTGAGGACGAAATCTGGTATGAAATCACAGCAGAAGACGCCAGAGACCAAACAGAATCCCAAACCTCCGAAATCACCATGTATGAGGTCTTCCCGCGAAAAGAGCCGGTATCTCTCACCGTCATCGATACCCCAGGATACGGAGACACTAGAGGGCTGGAAAAAGACATGGAAGTGGCTGAGAACTTGGCCGTTCTGTTCCAGAGCAACGACGGAGTTCGCGAAATTGACGCCGTGTGTTTCGTGATCCAGGCGTCCAAGAATCGTCTTTCAGACAGACAGCATTACGTTATCAGTTCAGTCCTGTCTTTGTTCGGAAAAGACATCGTGAACAACATCGTGTTTTTAATCACGCACGCCGACGGCATGGAACCCAAAAACGTCCTCGGCGCTATTCACAAAGCCAGAATCCCCTGCAGACGGGACAAACACGGCCAAcctgtttatttcttattcaaCAACCGGCAAGCCGATGACCGGCAAACCGAGAGACGCTTCAGCCGTGTTCAAAGAAGAGCTTGGGAAGACAGCATGGACGACATGAAGCATTTCCTTCGGTCTCTGGACATAAAGAACAGAAGAAGCTTAGAGCTGACTTCGCACGTCCTGATTCAGAGAATTCGATTCGGAGCGTTCATCTCTAACCTACAGCTGCAAATTCAAGAGATGGAGCTGAAAAAGGCGGAAAAGGTGCAGATTCAAGAGGCAAtgatacaaaacaagaaaaagatcGACGAGTGCAAGAACTTCACCTTTATGCTCAAAAAGACGGTGAAGCTGAAGGTGCCCACTGAGAGCGCGTCGTGGAAGAACAGGAAGGCGACGACCTGCACCGTCTGCGAGGAAAACTGCCACGAGTTTGGCTGCTGGTGGGCCTCGGGTCCCAGCCGCTGCGAAGTCATGAAAAACGGCTTCTGCACCGTGTGCACGCGCAGGTGCCACCACAGCCAGCACGTCAAACAAAACCACAAGTACATCCTCAAACACTCCAGCATAAAAGTGGAATTCGACAACTTCCTACGAAAATTCGAAAGAGCCGAAAAGAACTCCGAGACGTTTTCGGTCTTGAAGGACAGGCTCGACAAGGACCTGCAGGGGATCGAGGACCAGATCATGATTCTTCTGTTCAACGCTTACAGGACCATCAGGCAGCTGTCCGAGATCGCATTAAAACCGGACTCCGCTTTCACTCTTAAGCATCTGGACTTCTTCATCCCCAGAGTGAAGGAGGCAGGGAAAGAAAACTGGGTCCGAGAGCTGGAGGAGATGAGGAGGAGCGCCGAAGCTGAAGAATCAAATAAAGATGCTCTGAGTTATCTTCAGGCGGGGATGGCACATCTAGCGGTCGGCAAAGAACAAGAGCACACAGGACGGCTGATGAACCAGGAATAATGAAGAAAACAGTTTGCAAtgagaaataaatgcatctgaAGATAACGTTCATGCATTCAAGAGTTTGCGTTTATGACAAACTCTTGAATGTTGGTTCATGTAATTCAATTCTGTAAAATAATCTGTGTACTAGACGGTAGCTTTAATGTAAAAGGTCACAACTTcaaacacaattttcattttttcatcagTCCTACatacttttacatttctattattaCCGGCTGTCTGCTCGTCGGTCTCTGTGGCGCTCGTCTTAAACTcttgtcaaataaaaacattgcgcTCTGCAAAGGTCTCACGTTCTTTTGAGTTCACTTACAATGCACCAAGAAATCCAGGTTCTGTGTTCGGTCTTTCGTTCCACCAAGAAACCTTTCGTCACAAAGAATCAGGTTTTGCAAGCTAATGCAGTGTTGCTCTTAGAAATGCAAAACCTTCACAACCTCCGCGAATGTTGtattatacagaaataaattcgACTCGGCTCATACGCACGTctacattttaaacagaaatgcaaGGGGGTTAGATATTTAATTTCTCAAAACACTGAGATTTAAAGCAAACGAACGATTTGACGCATGATAACGGTGAATTTAAACGGCTGTGTTTGCCAAATTAAACAAGTGTCGTTAGTTTAGAACTGTGTGTAGAGTTTTGCAGATCGGTCTCAGGATCAGACACGAGTGGATGTTTTTCTTTGCGCTGTGGTTTTTCAGAGAAACCATTTGATTTGTTCCGCTGCCTGCAGAAAGGAAACGAAACCAATTCGGTCTTCATATGCAATTTTGCCCTTAGTCacatttacgtttatttttttgattaatcCCACCTAATGTTAAAGtctttaaatatgctttttatattgcaataatttcacattcaatctTCAAATTAAGGTAGAAACAACCATTAAATGAGTCAGAAAGGCATGACACACATAAGAGAGTATAATGCAGacacagaacaaaaaacacagaaaattaaatcatgcactatacagtaaaagtaatataataatgaagtaaaaatataaGCAT

Function

GO:

id name namespace
GO:0042611 MHC protein complex cellular_component
GO:0042613 MHC class II protein complex cellular_component
GO:0098797 plasma membrane protein complex cellular_component

KEGG:

id description
ko05320 Autoimmune thyroid disease
ko05330 Allograft rejection
ko05332 Graft-versus-host disease
ko04940 Type I diabetes mellitus

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238534.1 True 2850 mRNA 0.45 4 30765631 30769907

Neighbor

gene id symbol gene type direction distance location
golga2 golga2,LOC107658391 coding downstream 10691 30734104 ~ 30754940 (-)
ciz1a ciz1a,LOC107687257,LOC107571633,LOC107740230,LOC107689607 coding downstream 93535 30660119 ~ 30672096 (-)
surf2 surf2,LOC107740795,LOC107581206,LOC107743090 coding downstream 109674 30653163 ~ 30655957 (-)
surf4 surf4,LOC107740232,LOC107689610,LOC105890423,LOC103376134 coding downstream 113321 30646286 ~ 30652310 (-)
ass1 ass1,LOC107740768,LOC107687233,LOC107689608 coding downstream 120884 30622204 ~ 30644747 (-)
rabepk rabepk,LOC107743065,LOC107579283 coding upstream 61282 30831189 ~ 30835734 (-)
LOC122344688 LOC107743064,LOC107698017,LOC107734413 coding upstream 150910 30920817 ~ 30941882 (-)
cux2a NA coding upstream 172607 30942514 ~ 30951488 (-)
mcc mcc,LOC106565572 coding upstream 208686 30978593 ~ 31052589 (-)
rcl1 rcl1,LOC107701854,LOC107655287 coding upstream 284017 31053924 ~ 31064355 (-)
G40708 dnm1,LOC107568151,LOC107658356 non-coding downstream 40405 30720192 ~ 30725226 (-)
LOC122345983 NA non-coding downstream 54953 30708773 ~ 30710678 (-)
G40701 NA non-coding downstream 174991 30590197 ~ 30590640 (-)
G40698 NA non-coding downstream 195531 30567251 ~ 30570100 (-)
G40672 NA non-coding downstream 199475 30565684 ~ 30566156 (-)
G40739 NA non-coding upstream 807 30770714 ~ 30772024 (-)
G40751 hspa5,LOC107687227,LOC107567952 non-coding upstream 51218 30821125 ~ 30846878 (-)
G40762 NA non-coding upstream 96336 30866243 ~ 30919600 (-)
G40760 LOC108429729,LOC107563441 non-coding upstream 150944 30920851 ~ 30925197 (-)
LOC122344700 LOC108429729,LOC107563441 non-coding upstream 151271 30921178 ~ 30925197 (-)
G40711 NA other downstream 32271 30631028 ~ 30733360 (-)
fubp3 fubp3,LOC107689604,LOC107687236,LOC106566971 other downstream 152490 30590843 ~ 30613141 (-)
rnf170 rnf170,LOC107721034,LOC107687247 other downstream 672055 30087966 ~ 30093576 (-)
LOC122344966 LOC107749532,LOC107566852,LOC107742171,LOC107565644,LOC107690083 other downstream 836956 29924702 ~ 29928675 (-)
eng LOC107562335,LOC107704777,LOC107741503 other downstream 1110570 29614719 ~ 29655061 (-)
G40713 lzts3,LOC107567954,LOC107687254,LOC107574519,LOC795227,LOC107665914 other upstream 19726 30789633 ~ 30792719 (-)
G40752 hspa5,LOC107686379,LOC107743071,LOC107687227,LOC107567952,LOC107734417,LOC107734415,LOC107686377 other upstream 47825 30817732 ~ 30826358 (-)
LOC122344987 LOC107591496,LOC107663763,LOC107725109,LOC107734348,LOC107563429,LOC107654309 other upstream 561442 31331349 ~ 31350449 (-)
apooa apoo other upstream 932546 31702453 ~ 31711737 (-)
G41035 LOC107734367,LOC107665727,LOC107725151,LOC107591476,LOC107654325,LOC563292 other upstream 951363 31721270 ~ 31722906 (-)

Expression


Co-expression Network