foxd1 (foxd1,LOC107598200,LOC107718663,LOC107700903,LOC107596217,LOC107757501)


Basic Information

Item Value
gene id foxd1
gene name foxd1,LOC107598200,LOC107718663,LOC107700903,LOC107596217,LOC107757501
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 6086801 ~ 6089556 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238540.1
ttatttataataaatagaaccacgcgtttttttctgtttccactTGTAACGCCTAATCGAATCTGAACCCCGTTTCTGTTTAATTATGATGAGATATGGTTGCGCATTTCGAGCAGCATTAACTTTCAACGCTTTAATTATTGTAACGCGCTGCTCCCTTTGTTTTAACCGAGGCCTGTTCGCTCGCCGGACGCTCATCATCTTTAGCGCGCACCGCGTCCGTTCCCCCGTTCAGTGATACCACGCGCAAAATCACGACCGATTTCGGCACACTCGCAAATATGCCAAccgtttaacattttaagaaataacaGGGACGTCCGACCAGATGCCGATAGCTGATATCAATTATGAACACGACGGCGTCGGCCTCTCTCGGAGCggggcgcgcgcgcgcgcacgtgCCCTGCTTTTTCGCGAGCTAGAATGCTCTTTCGTGATCCGCGTGACTGATGCGAGTTAACAGCTGACTTTTTTCCATTACCAATGGCTCGCGGACGATCCGGCGCACTCCCGGAGTCACGCAAACCGCGAATGCGTGCTGAGGCGGACAACCGGGTGAGCGTTTAAAGCGTTTCTGAAAACGCCGACAACTCCGCGTTAAACCTCGCGCGCCCGGACACACGCTGTACAattcaaaaaaacacactacGGGGTTTTATCCTGTCGTGGGAGAAATGCAACAATAGCAGGGAGGGTCCTACCATAAAGACGCGCTTAATTCGTTGATCTTCGAGTCAATGGGGTTTTAAAGGAAGACGGCGGCATTTCAGAAATCCCGCTAAACGCGTGGAAAGCGGCAGCGCCGAGCGCTTAAAAGATACGGATGAACCTCGCAGTTCTTTAGATAATTTTTCCAAAGACTGATATTTTTTATCTCTTCGATAGCAGCGGTGACGCTCGGTCGTCATGTGATCAGCGAGCCGGTATAAAGCGCGCGGAAAGGTCCGCCCTCTTTGGAATCCTGGTCTGGCCTTTAGGAGGGTCTCCCCGGACAGAATAAGCGCGCGGATGTTGGGATTTGGGCGACCTCTTGATTCCGTGCCGACAGTAATCCATTAAAAGCCTATGGCACTGGTGACACACTGGCACGTCCTCTCCGCCTCTCCCGCATCCGCTCGGCGCGTCTTACGAGTTCTCTCGAATCGAGAGCGCAGGTAGCGCGCAGGCTCGGCACACCGCAGCCCATCGGGGACCCGAGAGAGCCATGACTCTGAGCTCCGAGATGTCGGATGCGTCCGTGCTCTCGGAGGAGACCGACATCGACGTGGTCGGAGAGGGAGACGACGGCGACGGCCGGACGCGCTCGTACGTGGACGAGGTGGCTCAGATGCACGACGAGATCCTCCTCGGCGGCTCGCCGTCTTGCGTGGACGCCTCCGCCGCGAGGGACCCCTACAAGCCGGCGAGCAAAAACACCCTGGTGAAGCCCCCGTACTCCTACATCGCCCTCATCACCATGGCAATCCTCCAGAGTCCCAAGAAGCGCCTGACGCTGAGCGAGATCTGCGACTTCATCAGTAACCGATTTCCCTACTACCGGGAAAAGTTTCCAGCTTGGCAGAACTCCATCCGGCACAACCTGTCCTTAAACGACTGCTTCGTCAAGATACCGCGGGAGCCCGGGAACCCCGGTAAAGGCAACTACTGGACGCTGGACCCGGAGTCCGCCGACATGTTTGATAACGGCAGCTTTCTCCGCCGCCGGAAACGCTTCAAGCGCCAGCAGGCGCCCGAACTTCTCCGCGACCACGGAGGCTTCCTCCCCGCGGCCGCCGCGTACGGCTACGGACCTTACGGTTGCGGATACGGCCTGCAGCTTCAGTCTTATCACGCGCATTCCGCGCTCCTCGcctttcagcagcagcagccgccgccgccgcccTCGTCCCGGCATCATCCTCACACCGGAACTCTCATCCCCGCGCCTTCCCTCATGCCAAACACTACGGAGCTCACCCGTTCCCGCTTCTATCCTCCTCTAAGCCCGGGGCTTTCTTCCCCCATACAGACTGCGGCCAAGTCCCCGGTACACCGTTCGCCCTTCTCCATAGACAGCATCATCGGGAGCTCTTTAAGCCCCACGCACTCGCATTGTGCCTCACGGACTTCCCCGGTGGTCCCGGTGCTTCCGCCGACCCTAGCGTCCCAGCACTCCCCGACCCCACTACCGGGAGTCTTGCACGGACCGACGTCTTTGCACGAAACCTACGCGAACCGGATTGTGAGCGGCACTAGCGGctgttaattttttaaaaaactaaacgtCACGTTTTAAAGCGATACACTCCCGCGTTTAAGGTaggattatttttttgcattgtttttttttttttttttttttttttacgcagcTGAATGGTGGACATCAACGCGCTCGTGCCTATATTCAAGCTGTGAAATacgaaatatatatttatgttaacgTTTTAGTTTCCGCCCCCACGAACTTTTCGTTGTCGGTGTGGTTGTGGTGATCACTGCATATAGGGCGTCTCaggacaacattttttttaaaacaggctATAAAATAAACTGTCAAATGTCTACAATgatatattttgtgtgaaaacgCAGATGTTTTCTAGTTTGGCGaactgattttattatttgtactttgtaatgaaaagtgaaaatttttttatacaacgTGTACTTCTCAGTAGCCTAATAAACAATGTACATTCTTTGATATTGTATACTCGGAGTGTGATATTTTTTACACGGTGTTTttccattaataataaatattgttt

Function

symbol description
foxd1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in anatomical structure morphogenesis; cell differentiation; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in central nervous system; head; immature eye; and neural crest. Orthologous to human FOXD1 (forkhead box D1).

NR:

description
PREDICTED: forkhead box protein D1-like

GO: NA

KEGG:

id description
K09397 FOXD; forkhead box protein D

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238540.1 True 2756 mRNA 0.53 1 6086801 6089556

Neighbor

gene id symbol gene type direction distance location
trnak-uuu_104 NA coding downstream 130430 5956299 ~ 5956371 (-)
slc6a4b slc6a4b,LOC107654599,LOC107597334,LOC107595929,LOC107672619,LOC107741230,LOC108434249,LOC106580268 coding downstream 176810 5898895 ~ 5909991 (-)
git2a git2,git2a,LOC107595928,LOC107752141,LOC107597287 coding downstream 202637 5859279 ~ 5884164 (-)
gltpa gltpa,gltp,LOC107752155,LOC107654619,LOC107741237,LOC107597288,LOC107595968 coding downstream 237162 5843678 ~ 5849639 (-)
trpv4 trpv4,LOC107752140,LOC107741238,LOC107654595,LOC107672638 coding downstream 243804 5820352 ~ 5842997 (-)
ankra2 ankra2,LOC107757524,LOC107655931,LOC107596806,LOC107718646,LOC107700928,LOC107596181 coding upstream 6601 6096157 ~ 6099701 (-)
enc1 enc1,LOC107655934,LOC107757521,LOC107570861,LOC107700930,LOC107596864 coding upstream 142710 6232266 ~ 6243818 (-)
gfm2 gfm2 coding upstream 165862 6255418 ~ 6263302 (-)
aif1l aif1l,LOC107718642,LOC107570864,LOC107757519,LOC107596876 coding upstream 176181 6265737 ~ 6281395 (-)
lamc3 lamc3,LOC107596886,LOC107718641,LOC107700933,LOC107757520,LOC107570860 coding upstream 193218 6282774 ~ 6343615 (-)
G33549 NA non-coding downstream 103998 5969242 ~ 5982803 (-)
G33544 NA non-coding downstream 127588 5953276 ~ 5959213 (-)
G33542 NA non-coding downstream 139927 5945989 ~ 5946874 (-)
G33533 NA non-coding downstream 189448 5896128 ~ 5897353 (-)
G33446 NA non-coding downstream 402517 5679683 ~ 5684284 (-)
G33610 NA non-coding upstream 82588 6172144 ~ 6172412 (-)
G33612 NA non-coding upstream 84291 6173847 ~ 6174113 (-)
G33615 NA non-coding upstream 88616 6178172 ~ 6178671 (-)
G33681 NA non-coding upstream 519893 6609449 ~ 6611492 (-)
G33683 LOC107588773 non-coding upstream 522184 6611740 ~ 6613055 (-)
G33175 NA other downstream 1463743 4622490 ~ 4623058 (-)
LOC122346168 srrm4,LOC107720865,LOC107702227,LOC107561260,LOC107656798 other downstream 1893720 4144856 ~ 4193081 (-)
piwil2 piwil2,LOC107560971,LOC107707823,LOC107702219 other downstream 2188223 3878650 ~ 3898578 (-)
coq5 coq5,LOC107560969,LOC107707852,LOC107656810,LOC107561264,LOC107702223,LOC107707851,LOC107560965,LOC101158254,LOC107755815,LOC107561265 other downstream 2334037 3744675 ~ 3752764 (-)
G32908 sema4c,LOC107697240,LOC107708238,LOC107699920 other downstream 3126624 2951462 ~ 2960177 (-)
G33758 LOC107596916,LOC107710760,LOC107700938,LOC107587412,LOC107693817 other upstream 734615 6824171 ~ 6826182 (-)
usp20 usp20,LOC107691016,LOC107693839,LOC107710745 other upstream 833290 6922846 ~ 6943203 (-)
G33998 LOC108444092 other upstream 1292790 7382346 ~ 7397153 (-)
LOC122345606 LOC107712378 other upstream 1617414 7706970 ~ 7711824 (-)
si:dkey-220k22.3 NA other upstream 1629009 7718565 ~ 7721758 (-)

Expression


Co-expression Network