si:dkey-17o15.2 (LOC107746431,LOC107710568,LOC107596211,LOC107693437,LOC107700230,LOC107548464)


Basic Information

Item Value
gene id si:dkey-17o15.2
gene name LOC107746431,LOC107710568,LOC107596211,LOC107693437,LOC107700230,LOC107548464
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 13700264 ~ 13704524 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238581.1
TTAGACACGGCGCTATTTCTGGGCTCTTGTCACATTGCTCGTCAGCTTCATAGCGCTGCTGGGCTGGGTCACGCTGCTAGGACTCGCCATTCACTTGAGcgacacaaataaacacaaagaaagcgCCTTGAAACGGGTTCATTTAAAAGGCTTCATACTCAGCGTCTCTGCTGTAACATACCTTTGGAAGTTATCGAGTGTAACGTTCAATACTTTTCGAGACACACGACGCCTCTGAAACTTTTGCGTGCGTAACGACGTCGGAAGACGAAATGGGGGAGAATGATGTTCAGATGGAGAGTGCAGAGCAAATGCAGGAGCCTCACGCTTCAAGCTCGGACAAAATCGACTTGTCATTAGATGACATTATCAAGCTAAATAAGAAGGAACAGAAGGCAAACAGAGCTGCCAACAGAGCTAAAACTAAACGTGCTTCTAACAGGAATAACGTCTTGAAGAAACTGAACCAGGTTCCACAGCAACAGAGGGGACTCAGACGAGGAGCGCAGCCATACCAAGGGCCTGGCAGGATGAGAGGTTTAAGGAAACAAAGAGGATCCGGGAGGGGCATGATGTCGAGAAGGGCTTCACTAAATAGAGCtgctgatgctgatgctgatgctgatgctgCCACGACTGGAGAACAGTTTGATCAGACCACATTCACAACGAGGGGCACATTCAGAGGACGGGGAAGAGGTAGAGGTAGAGGAGGCGGACTGAGCAGGGGTGCGTTGTCAGCAAGAGGACAAAGGGGTGGAAGACCATTTGTATTAGACAGAGCGTTTTTCGCTACCAAAAGTGCTGAGAAACTACAAAAGTACCAAACAATAAGAAGTCGAAGAACAGCACCATCTGGCTCCACGCTGACAGTTTCTCTGCCAAATGCTAAATCTGCACCTGTCGCTGTGAAGACATCTAATCAGGCTAGGAGGGGTGGGGCGGTGTTAAGGGGAAGATCATCTAGAGGAGCCGGTACTTCTTCACCGAAGGGGATTCCTCTGCAATTTAACTACAAAGCAACTACTAATCAGACTGCTGTATACCTTAATGACCGTTTCACCGACCTGAGGTTAAGAGGGCGAGGACGGGGAAGAGGTGGTGGAAGAGGAAGGGGAGATGTCggaggagctggaggaagaGGAAACATTGTTGGGGGTGGACGAGGTAGAGGACAAGGAAATATAGGTGGTGGAAGaggcagaggaagaggaaacaTTATGGGTGGtggcagaggaagaggaaacaTGGGTggtggaagaggaagaggaaacatTATGGGTGGtggcagaggaagaggaggggtTGGTGTGacaagaggaggaagaggcTTAAGAAGAGGGAGAGGAGCTGATCGAACAGTAACTCTTCAGTGATTAAAATTACAGCCATTCAATTTTATGAAGTAATAGCGTttactaaaaaacatttttagcaaaaaaaaaaaaaaaaaaaaaaaacattttggtgcATTGctatttactgtaatatttctgaCAGCGGgataagggtttttttttcttgcaatgtgctaaataaaaggaaacatttttattttaaaagaaaatgtaaattatttgattGTTATATGATgaaggtttttacatttttaggttatggaaaaatacaattttgcaaAGTACCTCAGAGGGTAATAAAGTGCCTCTTCAAATACAGTGTAAATACGGTTTTGTATTCTGACATTAGAAGAGGTTGCCTAAACTCCGTAGGAAAAACTGTATCCtatgcttttaaacaaaatgtaaaaaatgtaaatatcaaaaGCTGTTTACATTTGATATCATCATATCAATAAACATCAACcaatgga

Function

NR:

description
PREDICTED: H/ACA ribonucleoprotein complex subunit 1-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238581.1 True 1831 mRNA 0.44 9 13700264 13704524

Neighbor

gene id symbol gene type direction distance location
tagln2 -,LOC107710578,LOC107700246,LOC107746372,LOC107548469,LOC107596134,LOC107693452 coding upstream 61411 13633826 ~ 13638853 (+)
LOC122345172 si:dkeyp-110c7.4,LOC107746371,LOC107700245,LOC107596213,LOC107683146 coding upstream 73842 13623847 ~ 13626422 (+)
tppp2 tppp2,LOC107700244,LOC107548470,LOC107746373,LOC107596214,LOC107693436,LOC107710570 coding upstream 76735 13620810 ~ 13623529 (+)
nfkbib nfkbib,LOC107548472,LOC107700243,LOC107693450,LOC107596135,LOC107710580,LOC107746369 coding upstream 87595 13608474 ~ 13612669 (+)
gjd1a gjd1a,LOC107700241,LOC107548473,LOC107746368,LOC107710581,LOC107596136,LOC103027887,LOC108437049 coding upstream 99899 13589182 ~ 13600365 (+)
zgc:163098 zgc:163098,LOC107746377,LOC107700249,LOC107693453,LOC107710575,LOC108260249,LOC108411532 coding downstream 903 13705427 ~ 13718551 (+)
klhl13 klhl13,LOC107548461,LOC107693456,LOC107596129,LOC107710573,LOC107700252 coding downstream 28998 13733522 ~ 13776553 (+)
LOC122344637 NA coding downstream 87619 13792143 ~ 13796337 (+)
si:ch1073-224n8.1 si:ch1073-224n8.1,LOC107700253,LOC107665903,LOC107710566,LOC107596128,LOC107746433,LOC107548460,LOC107665901 coding downstream 95303 13799827 ~ 13804456 (+)
ltbp3 ltbp3,LOC107665902,LOC107710572,LOC107746379,LOC107700254 coding downstream 105189 13809713 ~ 13843783 (+)
G36168 NA non-coding upstream 51726 13647926 ~ 13648538 (+)
G36141 NA non-coding upstream 119466 13566977 ~ 13580798 (+)
G36140 NA non-coding upstream 178656 13519973 ~ 13521608 (+)
G36109 NA non-coding upstream 375881 13324033 ~ 13324383 (+)
LOC122345423 NA non-coding upstream 387612 13299755 ~ 13312652 (+)
G36191 NA non-coding downstream 16261 13720785 ~ 13721566 (+)
G36198 NA non-coding downstream 27445 13731969 ~ 13732456 (+)
G36332 NA non-coding downstream 270008 13974532 ~ 13974759 (+)
G36405 NA non-coding downstream 294576 13999100 ~ 14000337 (+)
G36406 NA non-coding downstream 296002 14000526 ~ 14003531 (+)
LOC122346073 LOC107654625,LOC107597279,LOC107741224,LOC107696048,LOC107727161 other upstream 892913 12803789 ~ 12807351 (+)
iscu si:ch211-191d15.2,iscu,LOC107597282,LOC104937683 other upstream 995019 12703352 ~ 12705245 (+)
si:ch211-225b11.4 si:ch211-225b11.4,LOC107743340,LOC107597327,LOC107654601,LOC107580265,LOC107735986 other upstream 1171474 12514013 ~ 12528790 (+)
G35720 LOC107654642,LOC107597266,LOC107743332,LOC107741203,LOC107557123,LOC107663229 other upstream 1444592 12249138 ~ 12255672 (+)
smarca1 smarca1,LOC107597262,LOC107672796,LOC107741199,LOC107663213,LOC103034185,LOC105028962,LOC105893234,LOC106603320 other upstream 1757154 11924228 ~ 11943110 (+)
ins ins,LOC107596207 other downstream 279573 13984097 ~ 13985706 (+)
G36495 NA other downstream 585896 14290420 ~ 14292500 (+)
LOC122345142 NA other downstream 595519 14300043 ~ 14305304 (+)
LOC122345214 NA other downstream 628499 14333023 ~ 14337765 (+)
mrpl1 LOC107663378,LOC107746869,LOC107752362,LOC107599195 other downstream 643038 14347562 ~ 14349991 (+)

Expression


Co-expression Network