mtnr1c (mtnr1c,LOC107756550,LOC107741285,LOC107672899,LOC107680355,LOC108442058)


Basic Information

Item Value
gene id mtnr1c
gene name mtnr1c,LOC107756550,LOC107741285,LOC107672899,LOC107680355,LOC108442058
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 11583955 ~ 11599842 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238595.1
CCGAGAGGCTACGGCGCCGGGGATGCGACGCAGACCGCCGTGTGTGGCGTCTGAGCAACAGCCcggagtgtgtgtatgtgtgtgtgtgtgtgtgtgagtcactgTGATCTGAGGTGACAATCCAGATAACTGTGGGGCTGACAATGCGCCGACTACCAAACGTGCATTTGAATTGAATGGAAGCTACTGGGAAATTCGAAGGGATCCTTCTGCGATAGTTCCCGTGCTATGGAAGTTACGTAAAAACGGCATTCACACAGCATTAGATTTATAAGCGCTCAGTGACATTTTATAAGTGGGAtggattgtttttattttctggagGGAGAATACCGGTTCGTTCCAACTTTGCCTTTTTCTCTCGAAGAGTGGATCAAAGAAGAAACTTCAATGCGTCTTCACGCTTTTCCCTGAGAATGGAGTTGATGAAGGCGAACTTGAGCTGCCTGGATAGTTTATCCCGGGGAAACAACTGCGTCCCCGCCAGGAGCACGTCTCCCGGGGTAGCGGCCACTCTAGCCGGCGTGCTGATCTTCACCACCGTGGCTGATATCGTTGGAAATCTGCTGGTCATCCTGTCGGTGTACAGGAACAAGAAACTCAGGAATGCAGGTAACATCTTTGTGGTGAGTCTTTCTGTGGCTGACCTGGTGGTGGCACTCTACCCCTACCCCCTGGCTTTGGTCGCTATCTTCCATAACGGCTGGACGATGGGCTCCCTGCACTGCCAGCTGAGCGGGTTTGTTATGGGACTGAGTGTGATCGGCTCGGTCTTCAACATCACGGCTATCGCCATCAACCGCTACTGCTACATCTGCCACAGTCTCCGCTACGACCGACTCTACTCCCGTCGGAACACCTGCCTGTACCTGCTGCTCACCTGGATGCTGACCGCTCTGGCCACCGTACCCAACTTCCTGGTGGGTTCCTTGAAATACGACCCGCGCGTCTTCTCCTGCACCTTCACCCAGACCGCGAGCTCTTCTTACACTGTCTGCGTGGTTCTCATCCACTTTCTGGTCCCTCTGGCCGTGGTTTCTTTCTGCTACCTGCGCATATGGACGTTGGTGATCAGGGTCAAAGGTCGTGTGCGGCCCAACCCAAAGGTCAGAGCGGCCGACATGAGGAATTTCTTGACGATGTTTGTGGTGTTCGTGCTGTTCGCCGTGTGCTGGGCGCCCCTGAACTTCATCGGGCTCGCTGTGGCGATAAACCCAGCAAGAGTGGCGCCGAATGTCCCGGAGTGGCTGTTTGTTACCAGCTACTTCATGGCGTATTTTAACAGCTGTCTGAATGCTGTCGTCTACGGGTTGCTCAACCAGAACTTCAGGCAAGAGTACAAACAGATTCTCCGTGCTCTCTGCACGCCACGAGCGCTGTTCACTGAAAGCTCCAGGTACAACACTGAAGCCATAAAGAGTAAACAGTCACCCGCGGGAACCAACAACAATGTTAAAGACGCCAATATGTATAAGGGAGGTGTAACGCACACTCTTTTCTAGCACGTCACTTcccatttaaatatgttatttggGTACAAAGGGGTTAAAGGCACAGCGGAGTGAAGCacacgtttgtttttatttttctgcagcACTTTCCTAAACACCCTTGGTTCGGTATGCACCAGGAAATTTTTGTGATTCTGTGATACATTGCGACCTGTTTTTTGACTattttcgttttgttttataGAGTAATACGTCAAATGAGAATCATTCAAATTTCGAAATATATTTTGAGACAAAGTTCTTGGTATTGGGGGTGAAAAAAAGTGCCCCTACCGTTGAAGCTAAAGGAACAGCAATTGGAATGAgagcttaaaatgtatttttaattattttgtttagtaaaataaatagaatatggTGCAAAACGTTTTTGAGGTTTTAACTTATTAACTTAATACTCAAATGTATTGCTATCCACTTGTTAAAaagatagctcacccaaaaatgaacattactcaccttcatgttgtttcaaatccATATggccttcattcatcttcaaaacacaaatgaaaatattttgaataataaccAAGATTTTTCTGTCCCTACATAGAAAGCAATgctgctgaaatgttttatggcCTAGAAAacagacatcattaaaatagtccatgtgacatcattgGTTCAGCTGAAGCtatgagaaaaacatttttgtgcagagaaaataaaaataatgactttattcaacaatttcttcttttCCATTTAGCTTTGACGCATGTTTGCAACAGCACCGTGAAAAGAAGAAATCTTGAAGtcattggggtttttttctttgtgcgcaaaaatattcttgtagcttcataaaattacattttctaacAACGTcctgactattttaacaatgtccttactatctttctgggccttaaataagtcagttgtgttgctgtctatggagagtCAGAAAGCTAtcggatttcattaaaaaatatcttcaatagTGTTCCGTAGATGAACAAAGGacttatgggtttggaaagaaatgagggtgagtaattaatgacagaaatttcatttttgggtgaattatcacTTTACGTTGTGACATATGGAATACTGTTTACGGGTCTAAACCTCTCCTCAATTCAATGAGGAATACAGTCTCCAGGCTCAGTTTTTTGGTATTACTACAACACACTGTGAGTGTATATTAGAGCCGTTTGTTTGCCTGGGTATCCTCACATGCTTTAGGACATCACTGGATGAATAAATACCGGAGACCTTTGTCCTATGCTGGTGAGCTTCATACTCTGTGCCTTTAGTGTGGGTTAAAAGCCTTCCTCGCCACTTcctacatttttatgactttgaaattaaagttaaatcacatttatttatatagagctttatATTATACAAGTGATTTAATAGCAGCTTGACATTAATGAACAGGAAAATAAGTGTTACCGTTATACAGATAATCAGTTATCAAACAAATTCAATttctgtaaagcagctctacagaagaGTCATTGTTGAGCTCAGTTTAGTTCAGTGTTGTTTCAATTTAGTTCAATAAAACCGTTGATGTTGCAAAGCTCATTAATTATGAAACAAGCAACAGTataagcagctttacagaaggCAACAGTGTCATTTTTCAGCTCTGTTCAGTTCAATAACTGTCAACGCAttaaatcgaaaaaaaaaaaatcattactgaATATTAATTGTCTTTCAAACTCCAGCTGTGCCAAGCCAAAGGTAACAGTGACAAGGAACtcaagcacaaaataaaaaatggggGCCAGTTTTTCGttgtacaaaaaaagcaaacacaggGCGATTTATGATTTCCAGGCTGCATCGCAAATCAGATTTTGTGGGctgatattattcaaaattttgCATTCAACTCCTTCCGCTTGGAGATCAGGATGCTGGTATTCGGTGAGAAAAGGGAAGTCTGCTGTCTTCCTTCAGAAAATGGCTTATCACCGGCCTTTTTATTCTCATCTTGCCGCTTGTCAGAGTCTTTGTTGGTGTCCTAACTGCTCGTGGTTATAGCAGGCCAACATACCGCTAATGATTTCCCatcaaaaaaaagcacattttcactAATGTGTGCCTTTAGCCCTGTGGTATCCTATCTACCCTACAGCAGTTCAGGGGCCTATAAGATTGATATTTCTTGTTAAATGaacattcctcaaaaaaaaaaaaaaaaaaaaaaggcatggtTGTCAGCCTTTTCTATGTATTTTGTTCAAGCAGACTTGAGctaacaaacagaaaataagactGCAGACAGTTGAGTATATGCTATCCAGTCCTTATTGGCTGATACCATGGCAACCATCactgaaaaagacattttgatgCTCTGTGTGTCCTTTGTAAACTCTTTGTAGCTTATATGGATGTTTTGTATATCAAGCAGTGTTTGTAAGTAAAGGACAaaggttttctctttttttgcagtaaCAATAAAGGAAAATAAGACTGA

Function

symbol description
mtnr1c Predicted to enable G protein-coupled receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway. Predicted to act upstream of or within signal transduction. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane.

NR:

description
PREDICTED: melatonin receptor type 1C

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008502 melatonin receptor activity molecular_function

KEGG:

id description
K22873 TRE1; protein trapped in endoderm-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238595.1 True 3966 mRNA 0.42 2 11583955 11599842

Neighbor

gene id symbol gene type direction distance location
vma21 vma21,LOC107741184,LOC107565438,LOC107680358,LOC107756551,LOC107672888,LOC107597345 coding downstream 1142 11580834 ~ 11582813 (-)
npas2 npas2,LOC107672582,LOC107597247,LOC107741183,LOC107565421,LOC107680380 coding downstream 9992 11527062 ~ 11573963 (-)
radx LOC107672617,LOC107756553,LOC107680386,LOC107597314,LOC107680354 coding downstream 57918 11519575 ~ 11526037 (-)
brwd3 brwd3,LOC107672566,LOC107680390 coding downstream 121194 11442622 ~ 11462761 (-)
chmp1b chmp1b,LOC107672547,LOC104940072,LOC101476317 coding downstream 141534 11439109 ~ 11442421 (-)
tnfsf10l4 LOC107741286,LOC107680360,LOC107565437 coding upstream 19268 11619110 ~ 11621440 (-)
rpl36a LOC100304549,LOC100219516,LOC106514001,LOC103353280 coding upstream 50597 11650439 ~ 11652716 (-)
LOC122345659 NA coding upstream 82378 11682220 ~ 11689922 (-)
LOC122345938 NA coding upstream 104389 11704231 ~ 11707716 (-)
arhgap20b LOC107672940,LOC107597255,LOC107663218,LOC107746244,LOC107573640 coding upstream 131677 11731519 ~ 11768014 (-)
G35434 NA non-coding downstream 253589 11304281 ~ 11330366 (-)
G35522 NA non-coding downstream 271125 11311549 ~ 11312830 (-)
G35450 NA non-coding downstream 333949 11249199 ~ 11250006 (-)
G35499 NA non-coding downstream 363064 11219968 ~ 11220891 (-)
G35501 fam76b,LOC107680374,LOC107592275,LOC107687655,LOC107597227 non-coding downstream 370218 11212039 ~ 11213737 (-)
G35592 LOC107741189,LOC107680392,LOC107565414,LOC107733362,LOC107597318 non-coding upstream 71115 11670957 ~ 11674817 (-)
G35594 NA non-coding upstream 92708 11692550 ~ 11694947 (-)
G35597 NA non-coding upstream 96349 11696191 ~ 11697674 (-)
G35599 NA non-coding upstream 98106 11697948 ~ 11699666 (-)
G35601 NA non-coding upstream 101391 11701233 ~ 11703708 (-)
hmgn7 hmgn7,LOC107672554,LOC107756557,LOC107680402,LOC107565427,LOC107748629,LOC107597243,LOC108260037,LOC108442050 other downstream 116833 11419955 ~ 11467122 (-)
slc25a15b slc25a15b,LOC107744499,LOC107687678,LOC107599942,LOC107726376,LOC107672737 other downstream 614837 10960311 ~ 10969118 (-)
G35384 NA other downstream 657792 10923927 ~ 10926163 (-)
G35371 znf703,LOC107599934,LOC107672788,LOC107744445,LOC107687685,LOC107726392,LOC107592299 other downstream 709891 10868364 ~ 10874064 (-)
G35122 NA other downstream 1122246 10461208 ~ 10461709 (-)
msna msna,msn,moes,LOC107746233,LOC107597256,LOC107672695,LOC107663223,LOC107741191 other upstream 195814 11795656 ~ 11815944 (-)
sh2d1aa sh2d1aa,LOC107713049,LOC107741293,LOC107663232,LOC107557102 other upstream 565561 12165403 ~ 12169410 (-)
G35825 tenm1,LOC107557119,LOC107713050,LOC107597323,LOC107741271 other upstream 717961 12317803 ~ 12319685 (-)
G35936 NA other upstream 902072 12501914 ~ 12505958 (-)
G36047 NA other upstream 1454002 13053844 ~ 13054857 (-)

Expression


Co-expression Network