zcchc8 (zcchc8,LOC107674788,LOC107740086,LOC107752243,LOC107560308)


Basic Information

Item Value
gene id zcchc8
gene name zcchc8,LOC107674788,LOC107740086,LOC107752243,LOC107560308
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 26854036 ~ 26859879 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238616.1
GGCTGTGAAGAGTTTAAACGTGTGCTGCTTCCTGTCTGCGGCCTCCGAGCCAATCGGCAGCCCCGCGTCGGCGCGGCGTAGGCCTTGCCCTTTGAACCGTGGGACGCGTCGTGCGTTGTGGTCATCAAACATGGCTGCGGTGGAGTTCGGGGACAGCGAGTTATTCGATCAGTTCGAGGAGAACGCGCCAGAGCGCGACCGTGTCGTTCACGAAGTCGGCGACGGAGAGGGCGAGAGCTCGGGTCGACTGCGCGAGCTTCGGCGGACGTTAGAAGCGTGTGAAGACACGATAGAGCGCCTGAACGCGGAGAATGAAGAACTGAAGAGAAAGTTAAACATATTAAGTCGTCCGACGGGTATAAGAATAGAAGATTCCAAAATGGACGGGCCTCTTTGTCAAATTAACTATGGAAACAACATTGTTTCAAAgcaGTGTCGGAAAGAAATGGAGGACTTCCTCTTCAGTCTTGTCCAGAAGACCCTACAAGAGTGTCAGAATAACCCAGAAAGCTCTGCTCTCCATGTCAAGCCGCATcATTCAAGTTTTGTTATGGAGGAAAGCTACAAAGTGAAGACTTCCAGTGACttcaaacacataaaaaatgctttcagcGTGATAGGGAGTGTTTTATACTTCACCAATTTCTGCGTTGATAAACTCGGCCAGCCGTTGCTGAATGAAAACCCCCAGCTGACCGATGGATGGGAGGTTCCAAAATACCAGCAGATCTTTGGCCAAATCATTGCCCTTGAGGGCCAAGAAGTGCAGATAAAGGAGAAAAGACCGAGACCATGCTGTTTTAACTGCTGTTCTGAGGACCATCAGCTGCGAGACTGTCCAGAGCCCAAAGATATGGCTCGTATCAATGAAAAGAGGAAAGAGTTTTCACAGAACAACAGTCAGAGCAACCAACGCTACCACGCAGAAGAGGTCGAAGAGCGATTTGCGAAGTACAAGCCAGGGAACTTGAGTCAAGAGCTCCTTGATGCGCTTGGGATTAATACGAAAACCCTTCCTCCATTCATCTATCGCATGAGAGAGCTGGGCTACCCACCTGGTTGGTTAAAAGAGGCAGAAATGGAAAACTCAGGCCTGATGCTCTATGATGGATCAAACGATGAAGATGAAAACAACCACAGCCAAAAGATATCTTACGACGTCTCAAAGCTGGTGGATTTTCCTGGCTTCAATGTGATTATACCCCCCAACGTACGAGATGATTACCGGTCTTTTGGTTCTATTCCAATGCAGCCTCAGCACTGGAAGCAACATTTTGCTGCCTTTTTAAGCAGTAACTTTCCAACgCAGGGCGCCAGCTGTAGCAAGAGGCGTCATGACGCTGAGTCCACACCCCAGAAGACAAAGAAATGGAAGTCCAATTCAGAAAACGAATCAGATATGGAGATAGAATCAGATCATGACATGTCTCAAATCAGATCTGATGGTTTCCAGTTCCACCCACCACTTCCTCCTGGCATTGCTCCACCTTTGCCACTGGGAACGCCTCCATCCACGCCTCCAATCCCTAAGGGAACTCCACCCCCAACTCCACCCACAAATTACTCTCCGTCCACTCAAGCCAGAGGGTTGACTGAAGGGGAAGAGTCAGAAGACGGTCTGACCCTGGAGGAACTGGAGGAGCAGCAAAGGCTTCTCTGGGCAGCCCTTGAGAAGGCAGATACTGCAACCAACAGTGATTCTGAAGCTGGAGCTTCTGAGACCCCCGTCCCAAGTTCCCCTAGTGTCGTCACTTCACTCAAACTCGACTCGGAGGAAGACGGAGAAAAGATGGAAGACTTGAGTCATACGTATGAAGTCAAAAGCACACCAACTTCACCCGTTGAGCCAGTAACTCACGTATGCGAGGACGAGAGGATAGATGAAACACCCGATGGACAGGAAGAACATTCAGTTATTAAAAAAGCAATCGATTTGCAAGCGGAGGTGAGCGACATTATTGTCCTGGATGAAGTTTACGAGGAAAACCCTAATCATGATGCAACAAATGGAACTTCGGACACTCCTCAGATAAGCGCACAGGAGTCAAATGCGCAAGTGGCCGACGACATGGAGGAACCCGTCGCAAATAAAGTAACTTTCGTCCCACACCGTAGCAGATTTGCTGAGGGAATAATTCCTTTTGAGGATACGCCTGAGTTTACGGAGGTTGCTGAAGCGACGGGGGTTTACCTCAAGATTCGAGATTTATTGAAAGGCTCCCCAAGAAATCAGGCCAAGAACAAGAAATAATCAAAGTCATACGTTTTATACTACCCACCTGTGGACAACAAGCAATGTTTTTTCTCTTATTACAGTCCTTTTCTATGTAGTTTTACTTTGGtgctttgtatatttttactgctattgtgtgatttttaaaaacacaaaaaggttACATTTGGTTTGTACCTGAATATTAACTGACTGTGGGTACTTGTTctgtgtgtagttttttttttaaattcttcccgttctgtttttctgtaattacaCTTGATATTGCTATCTCACGGCATGCTGACTTGTATGGCCACCATAGATCTGTGTAATTTATTGTGAATATCTTTCAGCCTAAATTTCTTAAGAATTCTCAACgaattaaaagttttaacttGAAAGTAA
>XM_043238617.1
GGCTGTGAAGAGTTTAAACGTGTGCTGCTTCCTGTCTGCGGCCTCCGAGCCAATCGGCAGCCCCGCGTCGGCGCGGCGTAGGCCTTGCCCTTTGAACCGTGGGACGCGTCGTGCGTTGTGGTCATCAAACATGGCTGCGGTGGAGTTCGGGGACAGCGAGTTATTCGATCAGTTCGAGGAGAACGCGCCAGAGCGCGACCGTGTCGTTCACGAAGTCGGCGACGGAGAGGGCGAGAGCTCGGGTCGACTGCGCGAGCTTCGGCGGACGTTAGAAGCGTGTGAAGACACGATAGAGCGCCTGAACGCGGAGAATGAAGAACTGAAGAGAAAGTTAAACATATTAAGTCGTCCGACGGGTATAAGAATAGAAGATTCCAAAATGGACGGGCCTCTTTGTCAAATTAACTATGGAAACAACATTGTTTCAAAgcaGTGTCGGAAAGAAATGGAGGACTTCCTCTTCAGTCTTGTCCAGAAGACCCTACAAGAGTGTCAGAATAACCCAGAAAGCTCTGCTCTCCATGTCAAGCCGCATcATTCAAGTTTTGTTATGGAGGAAAGCTACAAAGTGAAGACTTCCAGTGACttcaaacacataaaaaatgctttcagcGTGATAGGGAGTGTTTTATACTTCACCAATTTCTGCGTTGATAAACTCGGCCAGCCGTTGCTGAATGAAAACCCCCAGCTGACCGATGGATGGGAGGTTCCAAAATACCAGCAGATCTTTGGCCAAATCATTGCCCTTGAGGGCCAAGAAGTGCAGATAAAGGAGAAAAGACCGAGACCATGCTGTTTTAACTGCTGTTCTGAGGACCATCAGCTGCGAGACTGTCCAGAGCCCAAAGATATGGCTCGTATCAATGAAAAGAGGAAAGAGTTTTCACAGAACAACAGTCAGAGCAACCAACGCTACCACGCAGAAGAGGTCGAAGAGCGATTTGCGAAGTACAAGCCAGGGAACTTGAGTCAAGAGCTCCTTGATGCGCTTGGGATTAATACGAAAACCCTTCCTCCATTCATCTATCGCATGAGAGAGCTGGGCTACCCACCTGGTTGGTTAAAAGAGGCAGAAATGGAAAACTCAGGCCTGATGCTCTATGATGGATCAAACGATGAAGATGAAAACAACCACAGCCAAAAGATATCTTACGACGTCTCAAAGCTGGTGGATTTTCCTGGCTTCAATGTGATTATACCCCCCAACGTACGAGATGATTACCGGTCTTTTGGTTCTATTCCAATGCAGCCTCAGCACTGGAAGCAACATTTTGCTGCCTTTTTAAGCAGTAACTTTCCAACgGGCGCCAGCTGTAGCAAGAGGCGTCATGACGCTGAGTCCACACCCCAGAAGACAAAGAAATGGAAGTCCAATTCAGAAAACGAATCAGATATGGAGATAGAATCAGATCATGACATGTCTCAAATCAGATCTGATGGTTTCCAGTTCCACCCACCACTTCCTCCTGGCATTGCTCCACCTTTGCCACTGGGAACGCCTCCATCCACGCCTCCAATCCCTAAGGGAACTCCACCCCCAACTCCACCCACAAATTACTCTCCGTCCACTCAAGCCAGAGGGTTGACTGAAGGGGAAGAGTCAGAAGACGGTCTGACCCTGGAGGAACTGGAGGAGCAGCAAAGGCTTCTCTGGGCAGCCCTTGAGAAGGCAGATACTGCAACCAACAGTGATTCTGAAGCTGGAGCTTCTGAGACCCCCGTCCCAAGTTCCCCTAGTGTCGTCACTTCACTCAAACTCGACTCGGAGGAAGACGGAGAAAAGATGGAAGACTTGAGTCATACGTATGAAGTCAAAAGCACACCAACTTCACCCGTTGAGCCAGTAACTCACGTATGCGAGGACGAGAGGATAGATGAAACACCCGATGGACAGGAAGAACATTCAGTTATTAAAAAAGCAATCGATTTGCAAGCGGAGGTGAGCGACATTATTGTCCTGGATGAAGTTTACGAGGAAAACCCTAATCATGATGCAACAAATGGAACTTCGGACACTCCTCAGATAAGCGCACAGGAGTCAAATGCGCAAGTGGCCGACGACATGGAGGAACCCGTCGCAAATAAAGTAACTTTCGTCCCACACCGTAGCAGATTTGCTGAGGGAATAATTCCTTTTGAGGATACGCCTGAGTTTACGGAGGTTGCTGAAGCGACGGGGGTTTACCTCAAGATTCGAGATTTATTGAAAGGCTCCCCAAGAAATCAGGCCAAGAACAAGAAATAATCAAAGTCATACGTTTTATACTACCCACCTGTGGACAACAAGCAATGTTTTTTCTCTTATTACAGTCCTTTTCTATGTAGTTTTACTTTGGtgctttgtatatttttactgctattgtgtgatttttaaaaacacaaaaaggttACATTTGGTTTGTACCTGAATATTAACTGACTGTGGGTACTTGTTctgtgtgtagttttttttttaaattcttcccgttctgtttttctgtaattacaCTTGATATTGCTATCTCACGGCATGCTGACTTGTATGGCCACCATAGATCTGTGTAATTTATTGTGAATATCTTTCAGCCTAAATTTCTTAAGAATTCTCAACgaattaaaagttttaacttGAAAGTAA

Function

symbol description
zcchc8 Predicted to enable RNA binding activity. Predicted to be involved in ncRNA processing. Predicted to be part of catalytic step 2 spliceosome. Orthologous to human ZCCHC8 (zinc finger CCHC-type containing 8).

NR:

description
PREDICTED: zinc finger CCHC domain-containing protein 8

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K13128 ZCCHC8; zinc finger CCHC domain-containing protein 8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238616.1 True 2623 mRNA 0.47 14 26854036 26859879
XM_043238617.1 False 2620 mRNA 0.47 14 26854036 26859879

Neighbor

gene id symbol gene type direction distance location
clip1a clip1,clip1a,LOC107567280 coding downstream 2188 26821298 ~ 26851848 (-)
cdca5 cdca5,LOC107567277,LOC107698540 coding downstream 33399 26816920 ~ 26820637 (-)
si:dkey-273o13.3 LOC107758159,LOC107567285,LOC107698543,LOC107755655 coding downstream 44099 26802384 ~ 26809937 (-)
rom1a LOC107758165,LOC107567283,LOC107698544,LOC107755654 coding downstream 53990 26796255 ~ 26800046 (-)
rps6ka4 rps6ka4,LOC107758164,LOC107698546,LOC107567284,LOC107702937,LOC108427766,LOC103040978 coding downstream 65018 26769931 ~ 26789018 (-)
rsrc2 LOC107740083,LOC107674791,LOC107752237,LOC107702941,LOC107571524 coding upstream 3526 26863405 ~ 26869594 (-)
LOC122345160 mlxip,LOC107687059,LOC107712534,LOC107560310,LOC107702943 coding upstream 24691 26884570 ~ 26897222 (-)
unga ung,unga,LOC107712535,LOC107687060,LOC107560323,LOC107752258,LOC107702903 coding upstream 37584 26897463 ~ 26901674 (-)
LOC122345425 rps6ka4,LOC107758164,LOC107698546,LOC107567284,LOC107702937,LOC108427766 coding upstream 137670 26997549 ~ 27001260 (-)
LOC122345427 LOC107721568,LOC107697698,LOC107711701,LOC107654838,LOC108438743 coding upstream 141768 27001647 ~ 27014498 (-)
LOC122344941 NA non-coding downstream 480214 26372619 ~ 26373822 (-)
G39585 NA non-coding downstream 700333 26153465 ~ 26153703 (-)
G39579 NA non-coding downstream 734953 26118474 ~ 26119083 (-)
G39574 NA non-coding downstream 1070445 25782979 ~ 25783591 (-)
G39572 NA non-coding downstream 1125566 25728237 ~ 25728470 (-)
G39712 NA non-coding upstream 16711 26876590 ~ 26883175 (-)
G39738 LOC107705276,LOC107586737,LOC107671348,LOC107663665,LOC107721875 non-coding upstream 222122 27082001 ~ 27084786 (-)
LOC122344810 LOC107662059,LOC107548517 non-coding upstream 256088 27115967 ~ 27146962 (-)
LOC122344809 LOC107671984 non-coding upstream 267250 27127129 ~ 27128456 (-)
LOC122344808 LOC107671984 non-coding upstream 280536 27140415 ~ 27142658 (-)
LOC122344921 NA other downstream 1285350 25561974 ~ 25568686 (-)
G39413 LOC102215562 other downstream 1571750 25281886 ~ 25282286 (-)
LOC122345923 NA other downstream 2095368 24754202 ~ 24758668 (-)
naa38 naa38 other downstream 2105426 24746672 ~ 24748610 (-)
anapc2 anapc2,LOC107559737,LOC107730340,LOC107746468,LOC107683706,LOC107595991,LOC107684355 other downstream 2259920 24587724 ~ 24594116 (-)
LOC122345426 smpx,LOC107705278,LOC107671350,LOC107590224,LOC107663668,LOC107586736,LOC107721880 other upstream 239936 27099815 ~ 27107385 (-)
isca1 isca1,LOC107702919,LOC107662049 other upstream 523042 27382921 ~ 27398741 (-)
LOC122344874 NA other upstream 1026162 27886041 ~ 27895454 (-)
G40080 pappaa,pappa,LOC107556005,LOC107558864,LOC107739977,LOC107675511,LOC107728218 other upstream 1395949 28255828 ~ 28264704 (-)
LOC122345120 LOC107728794,LOC107696375,LOC107590009,LOC107739482 other upstream 2464103 29323982 ~ 29326115 (-)

Expression


Co-expression Network