LOC122344958 (LOC107690080,LOC107566862,LOC107728455)


Basic Information

Item Value
gene id LOC122344958
gene name LOC107690080,LOC107566862,LOC107728455
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 29910912 ~ 29919495 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238632.1
tctctctctctctgtcagtggAGGTTGTTTGTGGTCAGGAAGTGTAAAGTGCCTCAGTGCTGCTTGAGCAAAAGTCATTGCAGAGCACATCCGGTCTGTTTGTCTTTAAAAGAGTGCAGAAGGCTTCACTAAAGGACTCAGTTGAGGCTTTGGAGCTTGTTGGTCGGCGTGGGAGGAAACCGCCTTTCTGAGCGTCAGTCTCAAAATGGATGCCCTGCTCATCACGGAGGACCAAGCCTAAACATGAGCTCTTCTTTCTAAACTCTTTACGATGAGCGTCTGAATGAGAAGACTATGGATGATATTGTAGACTATCAAGAGTCTGAGCCTTATTTGGAGGCCATGCAGTACATAGAGAAGATGAAGCAGGAGAACGAGAGCGACAGCATCCCGATGAAGGATCACGGAGTGTCTCTGTACCCCGTCACCGTTCCCTGCACTCCTCTCTCTTACGCTACTGTGCAATGGGACGCCCCAGAAACGCCCACAGAGACCCCCGGGTCATCTGAGGCTGAGCTGGACTCCATCACCGGCCTGAGGCTTGACTGGACAATGGACCTTCCATCTGCAGACCAGGACGCCACTATCAATTTCTTACCTGAAGCTGAGTCACAATCGGATGTTACGTCTGAGACTTCTCAGACATGCAATGATCAGAAGTCAGATATACAAACACAGCTGGTCTTTTCAAATGAGGGGCTCCTTGTATCGTTTGCTGATGTCAACGACTCCAGAACAGATACGACTGAAGAGCATTTTGAAGCTTCTGCTGGCATTCAGATCTTTATGGACACACAAGACTCAGAGATTCAACCGGGTCCAGAGAGCTCCCAGTTGCAGGAAGATAAGGAACCCAGCATATCAGACCttccaaaaacaacatttgctCATGAGGAAAACACAGATTCAGGCAGTGAAGATCAAACAAGAGAGTGGAGTGAGACAGATGCAAACAGAGAATCATCAGGCGCAAAAGAGGATATTCAGGATCAAATTCAAGGACCTGATGAATGTCTGGAAAAAGAAGAGTCTAATtccccagacatccagtctgGTCAGTCACAGGACACAATCATTACAGGCCCCGCAGACCTGCCGGCCTTCACGAACGATTCGGTGCAGCTTGAGGAACTTATACTGACACAAGAGCCAGAAAACGCAAGCACGTTTGTTACAGTGGCAGAGAGGAACCAGAATACTGGCACTTTACAACATGCACAACAGATTCAGGGCACAGACCTCTCCGAGGAATTCAGCGCACAAGACCAACAACATGTAGAAAGACCTGCCAGCTCCGAGCAAAAGTCTGACCCTGAAAATGAATCGCCAGGGCAAGAAGAGCAGAATGAGCGGTTCAGACATCCAGATGAGAGCGGATCCTCAGAGCAGATCCAGTGTTCATATGAGGAGAAACTCTGTGATCAGACGCTGCCATCCGAGCATCCAGACGTGTCCAGCAACACAGAGCAGCCTACAGCTCCAGAAGATGGGGACGAGCATGTGCAAGATGAGACATCAGAGCCAGTTATAGATAAGGAACCCACTGGTCCCTGCATCAACGGTAGCACTGAGCTCGTAAACAGGGCCGAGGCTCAGCGGTTGGCCGAGAAGCTCTATAGACTGGACGGTTTTCAGCGTACAGATGTGGTCAGACATCTGGACAAAGACAACGAGTTCAGTCGTGCCGTCGGGGAAGAGTACCTTAAATTCTTTGACTTTACCGATCAAAGTCTGGAGCAAGCTCTCCGGTCATTTCTGAAGGAGGTGGTTTTGATCGGTGAGACTCAGGAGCGTGAGAGGGTCCTGCAGCATTTCTCTGCTCGGTTCCAGCAGAACAATCCTGACATCTTCTCCTCCGCTGGATCGGTGCTCACGCTCACGTGTGCCGTGATGCTGCTCAACACTGACCTGCATGGACAAAATGTCGGGAAGCCCATGTCCTCGGCTGAATTTGTGTCAAATCTGGACGGCATGAATGGAGGCAAGAACTTCAGCAAAGACTATCTGAAGAGTATCTACAGCTCCATCAAGAGTGATCCGCTGCAGTGGGCCGTAGAGAAGGGTGTTCTGGCTAAATCCATGATGCCGGAGCAGGATTTGGACCAGGATGGACATTTGCGTTCAAAGAGTAACCCGTTCCAGGATCTCCCTCACGACACCAAGGCCACTGTGTTTCAGAAAGGCTTTTTAAAACGCAAAGCACATGCAGACATTGATGGCAAACGCACTCCGTGGGGAAAACGAAGCTGGAAGACGTTTTATGCCATGCTGAAAGGAATGGTGCTTTACCTGCAGAAGGATGATTACGTTAAAGACTGCCAGAGCTCAGAGGAGGTGGTCAGCGTTCATCACTCTCTGGCGGAGCAAGCTTTGAATTACACCAAACGGCCGCATGTGTTTCGCCTGCAGACGGCCGACTGGAGAGTCTTCCTCTTCGAGGCTGCTTCCACGGAGCAGATGAACTCCTGGATCGGCCGGATCAACCTGGTGTCTGCGCTGTACTCCTCGCCTCCGTTCCCTGCTGCCGTTGGCTCTCAGAGGAAGTTCTGTCGGCCGATCCTGCCCGCCACGCAGTCCAGCCTCATGCTGGAGAAACAGCTGCAGTCGCACGCAGCCATGCTGCACAGCTTCCAGCAGGACCTGAGCTCTCTCCAGCAGGAGGCGACGGAGAGCAGGAGGAGCAAAGGCCGGGAGCTGGAGGAGCACCGACAGAGAGAGGAGTACTTACAGTATGAGaagtcTCGTTACGAAGTCTATCTGAAAGTTCTGGAGGCCTGGCAGGTGCTGGAGAAGTCCGATTCCTCGGTCGCTAACAGACTGACCGCGCTGGACCGGGGATTGTGGAGTGGATCGATGGACGAGCAGCAGGACGAGGCCGACGCCGGGATAAAACGATCTCACTCCAGCCCATCTCTGGAGTTAGAAACACCTCCTCAGCCCGTCGTCAAAGTCAGACGCAACATCTCTGAAAGACGTACCTACCGAAAGATTGTGATTCCCCGCCGGAACAAAGAGCTTTGAACAATTAGTCTCTTACACACAAACTATCAGAAATGCTCAAAGCACTTGAATATTTTACGATTTTACATCCTTCAGTGTATTTTTAAggtaaaaacagcaacaactgTAGTCTTtttatatacagattttttgCACAATACTCTTATTAATTGACCCTGTCCTTACTGTCCACAAGAGGGAGATGTTGCTCAAGATGTTTAAATGAAGAACAAGACCCAAATCATTAGTTCTCACATCTCAAAAGAGTTTCTGGATGAATGTGTGGTCAGAAGAACCATAGTAAACCAAGTGAAGACTCCaacggtgtgtgtgtttctctgtagggaagtgctGTCATTCAGAACCACGCTTGCTTCAGCCACATTTTCCTCTGATAGCACTGCTGCTGAATGGCTCTTGTGTATCAAGTGTTTGTGAATATCTGATATCTTTCATTTAAACAGCAGCCTGTCATTAAGCTCAGATGCTGAGGATGTGTTTGATGGATTGTGCCTTCGGGCTCTGGTTGCTCAGGATGTGTCGCTTGATAAAGATCTGAAAAGCCAATATCAGATAATGCCGCCTGTTGACACGTAAACAGATTGTGAGGAAAAACAATCAAACTGTCAGTGAGTCAGAAAATGACTGAACGCCACTTATAGCCAGACTTCTGCTCTCACACCGCATTATGGAGCTCCAATGTAAGTACAAATGTACTCTAAATATGGCGAGACGATTGATTTTATACTTGAGAAGTCTGGATAGAATTATGCTTAGGAAGCATGGACACACATTCCTCACAGAGTGTCACGAAGTACTACAGAAATTGAGAAGGTGTGTTATTTTGAAGCATGCACAGGAGCAGTTTTCAACCGCTGCGTCTAAAGCTCTTGTGTTTGCTCCGCCGGTGGCGTGAGGTCATGACCAAACTCCGAGCTGGAGCCGTGGAGCATGACGTCTGCGCTGTTCCTGGAGTCAGCTCAAGTTCCTCTGAGTTTTTGTTCCTGCACGTCTGTCTGGCTGAAGGGTTTTGTGGCCGCTTGTCAGGCCTGGTTGAGTAATTAAAAAGGCAAGCGCAGGCTTTTCTTCATTAAGGGTCCTGAGCGGCACTCGTCGCTCTCATTCTCGCTTGGTCTGCCACAGAAATTCCTGACATCATTCCTCTGGATTCCTCTTTGTGCCGAGGCTCGCTCTCAGACGCGGCGGGTGAAGCGTTAACTCTGCTTTGATGGTGCTTGCTCTTCTCGCTCATTCTCCATCTGCTCCAGCGTTCCTCATCGCTCCCCTGTGTTCATCTCCTGTTCTCTTCCCAGATGGAGAGATGTGAGAGGCGGTAAAGGCAAAGACCATTTTACAGGCAACTGTAATTTTGTCACTTTACCTCTCTTGAGTCAGTTCTGTTGGCACAGGTATGGTTTCTATTTATCCGTCCATCTCCTCACACTTTACAGTGGGTTTGTTGTctcgttttaaaaaaatgatccaCATTGATCAGTCCTTCCCTGATTTATATGAGGTTTCATTTGCGAGTTTAATGAAAAACCTTATAACTGTGGGTATTTCTTTTGCTCACAGACTGAGTAAACGCTGATGATTCTGTCCCTCTCAAGCAGACTTGTATTTGTGTTGGTTTCTGCTAATGTGGCCTGAGGCGTCTCAGATGGTGACCTGAGTTTGGCCTCAGCACTGGGCCATGCTCACAACGGCCTGAAGACAATAATGGGCTCCGTCCTTCATACTGTGGAGTGAACCAGGATAGATCTTCCACCCTCTATACCACGACCGAAGTGAGATTGAACAAGAACCGAAGCCCCAGTGCCATCCCACTGCTCTGGGTGTGTGTTCAaggtctttgtgtgtgtgttacactaaatgcagagcacaaattcaattcaaattcataAATTCTGAGTATGGGTCATCATACTTGGCCACACGTCACTTCACTTCAGTAAATGTCTGCGAGACGCGGTTTGTGTGTTTAGATGACATACATCCTGATCTACTGATGCACAATTTGTCCTGTTTAGCActgtatgcataaaaataattgtgggtcctgaatttttttttgttttgatctaAGAAGTATAGCTCCTTTTTAcaccaaacattttaaagaacaaaa

Function

NR:

description
PREDICTED: PH and SEC7 domain-containing protein 2-like

GO: NA

KEGG:

id description
K12494 PSD; PH and SEC7 domain-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238632.1 True 5128 mRNA 0.48 14 29910912 29919495

Neighbor

gene id symbol gene type direction distance location
prrc2b prrc2b,LOC107704672 coding downstream 30809 29859552 ~ 29880103 (-)
fam78ab fam78ab,fam78a,LOC107704739,LOC107562331,LOC107674928,LOC107745627,LOC107741498,LOC107597938 coding downstream 63922 29838639 ~ 29846990 (-)
gpsm1b LOC107741501,LOC107704761,LOC107562333,LOC107597941,LOC107674924,LOC107744057 coding downstream 212286 29673233 ~ 29698626 (-)
ak1 ak1,kad,LOC107704768,LOC107715674,LOC107674927 coding downstream 240727 29661018 ~ 29670185 (-)
LOC122345545 LOC107728794,LOC107590009,LOC107696375,LOC107696371,LOC107578696,LOC108263699 coding downstream 575224 29325983 ~ 29335688 (-)
sapcd2 LOC107742165,LOC107660368,LOC107565658 coding upstream 9328 29928823 ~ 29943177 (-)
LOC122344964 LOC107721044,LOC107563395,LOC107558067 coding upstream 47912 29967407 ~ 29970909 (-)
LOC122344968 mob3b,LOC107558072,LOC107563392,LOC107721040,LOC108414757 coding upstream 77941 29997436 ~ 30005969 (-)
thap1 thap1,LOC107563391,LOC107684196,LOC107687269,LOC107558071 coding upstream 87504 30006999 ~ 30012009 (-)
june LOC107687249,LOC107721038,LOC107563389,LOC107684195,LOC107735627 coding upstream 108335 30027830 ~ 30034212 (-)
G40268 LOC107741500,LOC107562332,LOC107704753 non-coding downstream 105110 29801194 ~ 29805802 (-)
G40266 NA non-coding downstream 225185 29685128 ~ 29685727 (-)
G40264 NA non-coding downstream 263899 29646617 ~ 29647013 (-)
G40083 NA non-coding downstream 1580436 28326897 ~ 28330476 (-)
G40081 NA non-coding downstream 1617975 28292726 ~ 28292937 (-)
LOC122344857 NA non-coding upstream 119959 30039454 ~ 30046148 (-)
LOC122345788 NA non-coding upstream 134117 30053612 ~ 30054797 (-)
G40422 NA non-coding upstream 186347 30105842 ~ 30106738 (-)
G40418 NA non-coding upstream 196913 30116408 ~ 30117863 (-)
G40654 NA non-coding upstream 377899 30297394 ~ 30419407 (-)
eng LOC107562335,LOC107704777,LOC107741503 other downstream 255851 29614719 ~ 29655061 (-)
G40182 brinp1,LOC107715673,LOC107674904 other downstream 420708 29460585 ~ 29490204 (-)
LOC122345120 LOC107728794,LOC107696375,LOC107590009,LOC107739482 other downstream 584797 29323982 ~ 29326115 (-)
G40080 pappaa,pappa,LOC107556005,LOC107558864,LOC107739977,LOC107675511,LOC107728218 other downstream 1646208 28255828 ~ 28264704 (-)
LOC122344874 NA other downstream 2015458 27886041 ~ 27895454 (-)
LOC122344966 LOC107749532,LOC107566852,LOC107742171,LOC107565644,LOC107690083 other upstream 5207 29924702 ~ 29928675 (-)
rnf170 rnf170,LOC107721034,LOC107687247 other upstream 168471 30087966 ~ 30093576 (-)
fubp3 fubp3,LOC107689604,LOC107687236,LOC106566971 other upstream 671348 30590843 ~ 30613141 (-)
G40711 NA other upstream 711533 30631028 ~ 30733360 (-)
G40713 lzts3,LOC107567954,LOC107687254,LOC107574519,LOC795227,LOC107665914 other upstream 870138 30789633 ~ 30792719 (-)

Expression


Co-expression Network