sapcd2 (LOC107742165,LOC107660368,LOC107565658)


Basic Information

Item Value
gene id sapcd2
gene name LOC107742165,LOC107660368,LOC107565658
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 29928823 ~ 29943177 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238640.1
AGCGGCAGAGAGGTTAGGGTTCAGAATGTGTGCGGGAGTTTGAgtgaagaaagaagagaaaatgagACAATAAAACAGCCAGAGGACAAAAGTGCGCTGTACATAAAACAACGTAATGGCCTTGATACAAGCGGACACCAACGGCAAAGGGAACGGACTAGTCAATACTCTGCAAAGTGGCGTCAGAAAGGTTTGTCCAAGTTCTAAAACAGCGAACATGCAGCCAAAGGACACTGAGTTTAGCACACAAGGTCTGCCAAAAGCTTTCCTTCACAGTTTACGAACTTTATTCGATATTCTTGACGACGGAAGACGGGGTTATGTCCATATATCTGAGATTGAGAGTCGGTGGCGAGGCGCGGAGGCTCGCGATTTACCCGCGGGAGTCCTGGAGAGTCTGAGGCGCGTCGCGCCGCGTCACGGCTGCCTGACTTTCGAGCGGTTCGTCGCGGGACTCAGAAACGCGACGTTCAATCCCGAAAACGGCAGCAGATCACTTGCTTTAAACTACCAACAGCAGCTGAAACCCCAGCAAAGAGCCACACGTCCGCTCGGACCGAGCAACGGAACTAACCGCCAGAACGGACGGAACGGACCGCAGGACAGCTCTATCTATTCCGCGCTTTACCCGGGGCTCTCGGTAGCATCGCGGGGCTGCGGAAGACTCGAGAGAAAGGACTGTTCGTATCAATCCGATGCGATACACGTCGGGCAAAACGCGCATCGGGTCCAAACCATTGAATCGCTCGCTCTGGAATCTCCCGATGATCAAAACACAGCGGAGAGCAGTGGTCTGCCCCGGTCAAAGAGTGAAACTATGACTGGATTCACTCGATCCAGACGACACACACGAAGCCGTGACGAACAGAGACGTCACACCATCACAAATGGAGTGGATTATGGAATGCCGGCTCGGGCCCCGGGGCCTCGACGCTGCCGTGTGGGCCGCTTACACCACCGTCTTCATTCCTCTGAGCAGCAGCCTGTTCTCCAGCAGAGCCCTGCACTTCTACCTCTGGCTAAAGCAGATGAAGGAGCTGGAGCAGGAGAAGGACTCTCTGTTGGCTGGCCTGGACGTGTTGGAGAGAGCCAGAGAATGgAGTTTTTGGCTGAATCTTGTCAAAGTCAGTTGGATGTTGTTCTGCCTAAACTACAGGACGTCACATGCTGCCTCAACAATTTACTCTCATTCTCTGGCAAGATGTTCCCGTCCTCTAGCTCCACCAgctctcctcctgctcctccacctcctccgcCTCCTCAGGCCATCCACATACTGAAGGAGCAGAACCGGCTTCTCACACagGAGGTGACAGAGAAGAGTGAACGCATCACTCAGCTGGAGCAGGAGAAATCGGCTCTGATCAAGCAGCTGTTTGAAGCTCGAGCTCGCAGCACTCATGATAGCAGTGCTCTCGACTCCACCTTCATCTGACTAGCATCAAATATCTCCAATCACACCACACACTCAGTCATCTGAGACCGAGAAGGACTGGATTCTCAGAGCTGTTTGAATAGTCCAAAACATGATTCACAGAGGAGCTCTCATGACTTGACCTGAAGAACACTGGTCTCAGTCTGCTGAGACCAGCAGAAGAATAAACTGGATTCCTGTGAGGTTAGATCAGACGGAACAGATAAATACGTCTGAACAGAGGCTGCAGATGAAGTTCCCACTCGTTTGTCCTGTATAGTCGACATGAACAGAAAGTTTATCTGAACAGTCGATTGACGAAGGCAGATACTATAGGCTTTTcattttggtttggtttggctTATTTTAGCTGTGTTGCTTTAATTAGTGTGCTGTTTTCTCTGGAAGAGTAGTGTTTTAAATTCCTGTCAATAAAAGTTGACATGTAAGGTCAAAAGGTTTCTTAAAGACATGATTTAGCATCTTTAATCAGCGATGGATCATCTGTATTGTGATCGAAAAAGGGGATGGGATTGGTTCAGTCCATCTGAATGTGAACTTGCAGTAGATTGTAAGAAAAGAGTGAACACAATGGTCAGTTAAATACTGCATTGGTCACTAGAGAGAAGACGTTGACATGTTGATTACAAATTAtgaggtgtaaaaaaaaagttataaatgcACCTCAAGAGCATTGATTCTGTTCCAGTCCAGTCCACTTTGTCtggctttgaatatttaattaggAAACCATATCAAGCTTTTCTcagaataacaataataatgttattgcATCTGTGATATGCTCTTAGATAccacagaaaatgtaatcttACGCCAGTTTATAAAGGgtgtgttttagtaatggaaATGATTCTGGAGGgatgtttttgttgaaatgcTTGGATTCATTCTTTAGTAAAGCGTTAATTGATAATTGAGCTCAGAAGGATTGACAGACACCCTCTATAGGTATTTTGTTGAATATCAATtgaagtattcctttaaaactgGATCTGCATCTTTTATGTACATTTGTCTCTCAGTTGTCTGGTTGCTGGATGGAGCTGTGAAGGGTTTGTGGTTTGATTCATTGCTCAGTTTTAATCTGTGTTATCGTTTCATACAGTGAGTGATGGTTTCTTTCATAGagtttccattttatttttttagttgacTGATAAAACAAGAttgataaactgataaaatTAGTATATTCTGGATATTTCGCAATTTTGTGAAAAACTACTGTGACTTCGTGAGAATCATTTCTGTAAATGTttccaaaatacatttactttactATACagcatataatatattataagcaCAACATGGCATGGATATAGATTTTAGAAAGATCAAGAAGTGGAATTTTAGGCCAGAAGGAAACTGAGAAAACAAGGATGTTTGTGGACGTTTTACACTCAGCATGATGAACGTGTTATTGCAGTCATCATCAGATCCTGCACTGTGGCTTATGGTTTTTGGGTATTACATGGAATAAATAAGCTATCGAGCTGACGGGACGTGTGTTCATGTTCATAATACGATAATCAGACAGTAATTGCAGACACAGTAACAGTGGGAATGTTTTCCCTTTTATTGAGCTGATACTGCAACATTCACTGGAAAGAACGCAGTGTTTGCCTCATTCTGCAGGAAGTGATGCTGAGCGATGATCCTTAAATGATTAAGAGAGCAACCACTGAAGCTGAAGAACACTAATGTCATTACAGGCTTTATATTTGCCGTAACTGTGTGTTTTACATGTGAATCTTATCATTCTGTTGATTTATTTCTCAGCATTTAATTCTCATTCTTTTGCATATGTAATCCACAACAAACTCTTCCATAATTAAAAGTCCTTCATTCTTGG
>XM_043238641.1
AGCGGCAGAGAGGTTAGGGTTCAGAATGTGTGCGGGAGTTTGAgtgaagaaagaagagaaaatgagACAATAAAACAGCCAGAGGACAAAAGTGCGCTGTACATAAAACAACGTAATGGCCTTGATACAAGCGGACACCAACGGCAAAGGGAACGGACTAGTCAATACTCTGCAAAGTGGCGTCAGAAAGGTTTGTCCAAGTTCTAAAACAGCGAACATGCAGCCAAAGGACACTGAGTTTAGCACACAAGGTCTGCCAAAAGCTTTCCTTCACAGTTTACGAACTTTATTCGATATTCTTGACGACGGAAGACGGGGTTATGTCCATATATCTGAGATTGAGAGTCGGTGGCGAGGCGCGGAGGCTCGCGATTTACCCGCGGGAGTCCTGGAGAGTCTGAGGCGCGTCGCGCCGCGTCACGGCTGCCTGACTTTCGAGCGGTTCGTCGCGGGACTCAGAAACGCGACGTTCAATCCCGAAAACGGCAGCAGATCACTTGCTTTAAACTACCAACAGCAGCTGAAACCCCAGCAAAGAGCCACACGTCCGCTCGGACCGAGCAACGGAACTAACCGCCAGAACGGACGGAACGGACCGCAGGACAGCTCTATCTATTCCGCGCTTTACCCGGGGCTCTCGGTAGCATCGCGGGGCTGCGGAAGACTCGAGAGAAAGGACTGTTCGTATCAATCCGATGCGATACACGTCGGGCAAAACGCGCATCGGGTCCAAACCATTGAATCGCTCGCTCTGGAATCTCCCGATGATCAAAACACAGCGGAGAGCAGTGGTCTGCCCCGGTCAAAGAGTGAAACTATGACTGGATTCACTCGATCCAGACGACACACACGAAGCCGTGACGAACAGAGACGTCACACCATCACAAATGGAGTGGATTATGGAATGCTAAAGCAGATGAAGGAGCTGGAGCAGGAGAAGGACTCTCTGTTGGCTGGCCTGGACGTGTTGGAGAGAGCCAGAGAATGGTACCAGACGCAGATCCACAACATCACTGAAACGCAGAGACACATCGGCCAGAGCCGCCACTCCAGTgAGTTTTTGGCTGAATCTTGTCAAAGTCAGTTGGATGTTGTTCTGCCTAAACTACAGGACGTCACATGCTGCCTCAACAATTTACTCTCATTCTCTGGCAAGATGTTCCCGTCCTCTAGCTCCACCAgctctcctcctgctcctccacctcctccgcCTCCTCAGGCCATCCACATACTGAAGGAGCAGAACCGGCTTCTCACACagGAGGTGACAGAGAAGAGTGAACGCATCACTCAGCTGGAGCAGGAGAAATCGGCTCTGATCAAGCAGCTGTTTGAAGCTCGAGCTCGCAGCACTCATGATAGCAGTGCTCTCGACTCCACCTTCATCTGACTAGCATCAAATATCTCCAATCACACCACACACTCAGTCATCTGAGACCGAGAAGGACTGGATTCTCAGAGCTGTTTGAATAGTCCAAAACATGATTCACAGAGGAGCTCTCATGACTTGACCTGAAGAACACTGGTCTCAGTCTGCTGAGACCAGCAGAAGAATAAACTGGATTCCTGTGAGGTTAGATCAGACGGAACAGATAAATACGTCTGAACAGAGGCTGCAGATGAAGTTCCCACTCGTTTGTCCTGTATAGTCGACATGAACAGAAAGTTTATCTGAACAGTCGATTGACGAAGGCAGATACTATAGGCTTTTcattttggtttggtttggctTATTTTAGCTGTGTTGCTTTAATTAGTGTGCTGTTTTCTCTGGAAGAGTAGTGTTTTAAATTCCTGTCAATAAAAGTTGACATGTAAGGTCAAAAGGTTTCTTAAAGACATGATTTAGCATCTTTAATCAGCGATGGATCATCTGTATTGTGATCGAAAAAGGGGATGGGATTGGTTCAGTCCATCTGAATGTGAACTTGCAGTAGATTGTAAGAAAAGAGTGAACACAATGGTCAGTTAAATACTGCATTGGTCACTAGAGAGAAGACGTTGACATGTTGATTACAAATTAtgaggtgtaaaaaaaaagttataaatgcACCTCAAGAGCATTGATTCTGTTCCAGTCCAGTCCACTTTGTCtggctttgaatatttaattaggAAACCATATCAAGCTTTTCTcagaataacaataataatgttattgcATCTGTGATATGCTCTTAGATAccacagaaaatgtaatcttACGCCAGTTTATAAAGGgtgtgttttagtaatggaaATGATTCTGGAGGgatgtttttgttgaaatgcTTGGATTCATTCTTTAGTAAAGCGTTAATTGATAATTGAGCTCAGAAGGATTGACAGACACCCTCTATAGGTATTTTGTTGAATATCAATtgaagtattcctttaaaactgGATCTGCATCTTTTATGTACATTTGTCTCTCAGTTGTCTGGTTGCTGGATGGAGCTGTGAAGGGTTTGTGGTTTGATTCATTGCTCAGTTTTAATCTGTGTTATCGTTTCATACAGTGAGTGATGGTTTCTTTCATAGagtttccattttatttttttagttgacTGATAAAACAAGAttgataaactgataaaatTAGTATATTCTGGATATTTCGCAATTTTGTGAAAAACTACTGTGACTTCGTGAGAATCATTTCTGTAAATGTttccaaaatacatttactttactATACagcatataatatattataagcaCAACATGGCATGGATATAGATTTTAGAAAGATCAAGAAGTGGAATTTTAGGCCAGAAGGAAACTGAGAAAACAAGGATGTTTGTGGACGTTTTACACTCAGCATGATGAACGTGTTATTGCAGTCATCATCAGATCCTGCACTGTGGCTTATGGTTTTTGGGTATTACATGGAATAAATAAGCTATCGAGCTGACGGGACGTGTGTTCATGTTCATAATACGATAATCAGACAGTAATTGCAGACACAGTAACAGTGGGAATGTTTTCCCTTTTATTGAGCTGATACTGCAACATTCACTGGAAAGAACGCAGTGTTTGCCTCATTCTGCAGGAAGTGATGCTGAGCGATGATCCTTAAATGATTAAGAGAGCAACCACTGAAGCTGAAGAACACTAATGTCATTACAGGCTTTATATTTGCCGTAACTGTGTGTTTTACATGTGAATCTTATCATTCTGTTGATTTATTTCTCAGCATTTAATTCTCATTCTTTTGCATATGTAATCCACAACAAACTCTTCCATAATTAAAAGTCCTTCATTCTTGG
>XM_043238642.1
AGCGGCAGAGAGGTTAGGGTTCAGAATGTGTGCGGGAGTTTGAgtgaagaaagaagagaaaatgagACAATAAAACAGCCAGAGGACAAAAGTGCGCTGTACATAAAACAACGTAATGGCCTTGATACAAGCGGACACCAACGGCAAAGGGAACGGACTAGTCAATACTCTGCAAAGTGGCGTCAGAAAGGTTTGTCCAAGTTCTAAAACAGCGAACATGCAGCCAAAGGACACTGAGTTTAGCACACAAGGTCTGCCAAAAGCTTTCCTTCACAGTTTACGAACTTTATTCGATATTCTTGACGACGGAAGACGGGGTTATGTCCATATATCTGAGATTGAGAGTCGGTGGCGAGGCGCGGAGGCTCGCGATTTACCCGCGGGAGTCCTGGAGAGTCTGAGGCGCGTCGCGCCGCGTCACGGCTGCCTGACTTTCGAGCGGTTCGTCGCGGGACTCAGAAACGCGACGTTCAATCCCGAAAACGGCAGCAGATCACTTGCTTTAAACTACCAACAGCAGCTGAAACCCCAGCAAAGAGCCACACGTCCGCTCGGACCGAGCAACGGAACTAACCGCCAGAACGGACGGAACGGACCGCAGGACAGCTCTATCTATTCCGCGCTTTACCCGGGGCTCTCGGTAGCATCGCGGGGCTGCGGAAGACTCGAGAGAAAGGACTGTTCGTATCAATCCGATGCGATACACGTCGGGCAAAACGCGCATCGGGTCCAAACCATTGAATCGCTCGCTCTGGAATCTCCCGATGATCAAAACACAGCGGAGAGCAGTGGTCTGCCCCGGTCAAAGAGTGAAACTATGACTGGATTCACTCGATCCAGACGACACACACGAAGCCGTGACGAACAGAGACGTCACACCATCACAAATGGAGTGGATTATGGAATGCTAAAGCAGATGAAGGAGCTGGAGCAGGAGAAGGACTCTCTGTTGGCTGGCCTGGACGTGTTGGAGAGAGCCAGAGAATGgAGTTTTTGGCTGAATCTTGTCAAAGTCAGTTGGATGTTGTTCTGCCTAAACTACAGGACGTCACATGCTGCCTCAACAATTTACTCTCATTCTCTGGCAAGATGTTCCCGTCCTCTAGCTCCACCAgctctcctcctgctcctccacctcctccgcCTCCTCAGGCCATCCACATACTGAAGGAGCAGAACCGGCTTCTCACACagGAGGTGACAGAGAAGAGTGAACGCATCACTCAGCTGGAGCAGGAGAAATCGGCTCTGATCAAGCAGCTGTTTGAAGCTCGAGCTCGCAGCACTCATGATAGCAGTGCTCTCGACTCCACCTTCATCTGACTAGCAT

Function

NR:

description
PREDICTED: suppressor APC domain-containing protein 2 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238640.1 True 3293 mRNA 0.44 7 29928823 29943177
XM_043238641.1 False 3248 mRNA 0.43 6 29928823 29943177
XM_043238642.1 False 1330 mRNA 0.53 6 29930674 29943177

Neighbor

gene id symbol gene type direction distance location
LOC122344958 LOC107690080,LOC107566862,LOC107728455 coding downstream 9328 29910912 ~ 29919495 (-)
prrc2b prrc2b,LOC107704672 coding downstream 48720 29859552 ~ 29880103 (-)
fam78ab fam78ab,fam78a,LOC107704739,LOC107562331,LOC107674928,LOC107745627,LOC107741498,LOC107597938 coding downstream 81833 29838639 ~ 29846990 (-)
gpsm1b LOC107741501,LOC107704761,LOC107562333,LOC107597941,LOC107674924,LOC107744057 coding downstream 230197 29673233 ~ 29698626 (-)
ak1 ak1,kad,LOC107704768,LOC107715674,LOC107674927 coding downstream 258638 29661018 ~ 29670185 (-)
LOC122344964 LOC107721044,LOC107563395,LOC107558067 coding upstream 24230 29967407 ~ 29970909 (-)
LOC122344968 mob3b,LOC107558072,LOC107563392,LOC107721040,LOC108414757 coding upstream 54259 29997436 ~ 30005969 (-)
thap1 thap1,LOC107563391,LOC107684196,LOC107687269,LOC107558071 coding upstream 63822 30006999 ~ 30012009 (-)
june LOC107687249,LOC107721038,LOC107563389,LOC107684195,LOC107735627 coding upstream 84653 30027830 ~ 30034212 (-)
trabd2a trabd2a,LOC107558059,LOC107570885,LOC107717329 coding upstream 179049 30122226 ~ 30164017 (-)
G40268 LOC107741500,LOC107562332,LOC107704753 non-coding downstream 123021 29801194 ~ 29805802 (-)
G40266 NA non-coding downstream 243096 29685128 ~ 29685727 (-)
G40264 NA non-coding downstream 281810 29646617 ~ 29647013 (-)
G40083 NA non-coding downstream 1598347 28326897 ~ 28330476 (-)
G40081 NA non-coding downstream 1635886 28292726 ~ 28292937 (-)
LOC122344857 NA non-coding upstream 96277 30039454 ~ 30046148 (-)
LOC122345788 NA non-coding upstream 110435 30053612 ~ 30054797 (-)
G40422 NA non-coding upstream 162665 30105842 ~ 30106738 (-)
G40418 NA non-coding upstream 173231 30116408 ~ 30117863 (-)
G40654 NA non-coding upstream 354217 30297394 ~ 30419407 (-)
LOC122344966 LOC107749532,LOC107566852,LOC107742171,LOC107565644,LOC107690083 other downstream 148 29924702 ~ 29928675 (-)
eng LOC107562335,LOC107704777,LOC107741503 other downstream 273762 29614719 ~ 29655061 (-)
G40182 brinp1,LOC107715673,LOC107674904 other downstream 438619 29460585 ~ 29490204 (-)
LOC122345120 LOC107728794,LOC107696375,LOC107590009,LOC107739482 other downstream 602708 29323982 ~ 29326115 (-)
G40080 pappaa,pappa,LOC107556005,LOC107558864,LOC107739977,LOC107675511,LOC107728218 other downstream 1664119 28255828 ~ 28264704 (-)
rnf170 rnf170,LOC107721034,LOC107687247 other upstream 144789 30087966 ~ 30093576 (-)
fubp3 fubp3,LOC107689604,LOC107687236,LOC106566971 other upstream 647666 30590843 ~ 30613141 (-)
G40711 NA other upstream 687851 30631028 ~ 30733360 (-)
G40713 lzts3,LOC107567954,LOC107687254,LOC107574519,LOC795227,LOC107665914 other upstream 846456 30789633 ~ 30792719 (-)
G40752 hspa5,LOC107686379,LOC107743071,LOC107687227,LOC107567952,LOC107734417,LOC107734415,LOC107686377 other upstream 874555 30817732 ~ 30826358 (-)

Expression


Co-expression Network