LOC122344964 (LOC107721044,LOC107563395,LOC107558067)


Basic Information

Item Value
gene id LOC122344964
gene name LOC107721044,LOC107563395,LOC107558067
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 29967407 ~ 29970909 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238643.1
ATTACAGAGAGCAAAGGTTTGTTTCTGTCTGAGCTCTTTTAAGCATGAGTTAACAGTCTATTACACAGCACTCAAGGGACACTGTTTGTTTGGTTGATGCAGTGCTGTTATCACAGCTAACAGAGATCATGGTCAGGAGACAGATGCATGTGGTGTGGGTCGCAGCGGTTCTGATGAGCTCAGGAGTGATCGCACAGCAGGTTGACATGAGCAACGCAGCTCTGACAGAGATTCCTAAAGATATACCTACAAACATCACCAGATGGATCCTGAGCAATAACTCACTTGTGATGACCGCCTCGGATATAAACACCTTACAGAAATATCCCAGGATTACTGAGTTAGATCTTTCTTACAACCACATACAGATCCTGCTTCCTGGAGCCTTTGACAAACTCACAaatctaaacattcttaaacTGAGGGGAAATAGCCTGCAGACCCTTGACAAAGACATCTTAAAAGGACTGACAAAACTAAAGATTCTGGATCTGAAGGACAACCCATGGAACTGCTCCTGTTCGCTCAAAAGCCTCTTCAAAGAGCTGAATGAGTCTGGTGTATCAATAGGGAAAGAAGTCACTTGTGACACTCCccagaaaacagctgtgcttgATGGTAACCCTTCCTGCTCAATTCAAGCCACAACATCTGTGGAGAAATCTACAGCTCCCACAATGAAAACCAGATCAACACCAGCAACGACCATAGAGCCGACCAACAGCAGTCACATCAATGGCTCCAGCAAAGGGTTGATGGCGAGGGATGGTGGGACACAGACAGGAAGCCACAGCTGGAAGTTCCTGCTTGGTGTCGTGGCTCTAACTCTCAGCACTTCCATGCTCATTGTATGCGCTGTTAAATCTCCCTCGTGGTACAAGCTTCTGTTTAATTACCGACATCAGAGGCTCTGCGAGGACGTGGAGCACAGCGTCTTCAATACCGGACGCTTTTCCAACTTCAGTCTGGACACAGAGCAGACGGACACAAGTGCTCAGGAGCTGGACACTGGACTGAGTCTGCAGCCCtttgaggatgatgatgatgatgatggttttATAGAGGACGGTTACATTGAGCCGGGAAACTACAAAGAACAAACGGATGCTAACGAGTCATGAGCAAGATCTCTGACAGAAGAAGAAGCTGGCTgtaaacgagaaaaaaaaagctacaaactCATGCATTAAACTATGAGGATCATTTTATTCCAGTGCAGTAAGGCAACATGAAAAAgccattaaaaattaaaaacccaaGGATCTCTGAACtggaaatgcaaatgcatgcatctcagcagattaaaaaaaatagtgtgtaaatgctgtaatttttgcttttaaaaaaaattattactcaATCTCTCTTTTTAAAAGCTTGTCAGTGATGTATGCAAGGATATAAACTGTTTGCATGTAGTTTTTTCTGCAGCatgtagaattatttaaaaagaagctCTGGCATGATTGAACTGAAGAGCAGTCATACTCAGGAGTACTCATCTGCTGCCCTCTTGTGCACAAACATGTAactgtgaaaaaacaaaactacttactctcttctctctgtgaATATCACGTCCATACTTTGAGCTTCTCTGTCATTCTGTGCTTTCAGCTAATGagacaaacataaaataaactcAGCAGGAATATGAGAAGAGCAAAGAGGAAGATGCTGCCATTTAAATGAAGTTGTCTCACCATGTTGATGTCATTCACGACTTCATCCATctcagtgtttgtgttcagCTTGTCAACTAGCTGATAATTAAAAGAGCATATAAAGAAGGTTTTATTGATTCAAAATAAAGAGACTTGTAGTACTTCCACTAATCGTTTTAAATTAGTGTACCATGTTGTAATCTGCCAGTTGCCCTTGAAGATCTTTTATTTCCCCAGCTAGGATTTCTGCTCTGTTCacagaaaaagttttaaaacatttaataaattcattacTGCATCCTAA
>XM_043238644.1
ACTCTACCATTCATATCTATaacattttcttctttaattttaaaccttacaaaagtgaaaaactgaTGTTTCATGCAGATGACGAGGCAAAAGTCCTAAATGCTATTATAACAAGAAATGTAATAGCAGTCAACTGAAACAAACTGATTACATTATGAAACCTTGGAATAATGCCATATAATGGTCATCACAAGCTTTTTTGTACTTCAAAGAAGCAAAGAGTCTGTTCAAATGATCcattaaatgcttaaatgatTAAAGTTTATTGTCATGTAAGGTTAAGTATCATGGCAAAAActtagcaaaacaaaaacaaatatcctTTTTGCACTGAACAAACCATAAAGCAAATGGAGACGATGTGCTGTGTCAGGAATACACCAGTCGAGTTCTGAATGAGGTGAACGGGACATAAAACACTGACACAAGGACACTGTTTGTTTGGTTGATGCAGTGCTGTTATCACAGCTAACAGAGATCATGGTCAGGAGACAGATGCATGTGGTGTGGGTCGCAGCGGTTCTGATGAGCTCAGGAGTGATCGCACAGCAGGTTGACATGAGCAACGCAGCTCTGACAGAGATTCCTAAAGATATACCTACAAACATCACCAGATGGATCCTGAGCAATAACTCACTTGTGATGACCGCCTCGGATATAAACACCTTACAGAAATATCCCAGGATTACTGAGTTAGATCTTTCTTACAACCACATACAGATCCTGCTTCCTGGAGCCTTTGACAAACTCACAaatctaaacattcttaaacTGAGGGGAAATAGCCTGCAGACCCTTGACAAAGACATCTTAAAAGGACTGACAAAACTAAAGATTCTGGATCTGAAGGACAACCCATGGAACTGCTCCTGTTCGCTCAAAAGCCTCTTCAAAGAGCTGAATGAGTCTGGTGTATCAATAGGGAAAGAAGTCACTTGTGACACTCCccagaaaacagctgtgcttgATGGTAACCCTTCCTGCTCAATTCAAGCCACAACATCTGTGGAGAAATCTACAGCTCCCACAATGAAAACCAGATCAACACCAGCAACGACCATAGAGCCGACCAACAGCAGTCACATCAATGGCTCCAGCAAAGGGTTGATGGCGAGGGATGGTGGGACACAGACAGGAAGCCACAGCTGGAAGTTCCTGCTTGGTGTCGTGGCTCTAACTCTCAGCACTTCCATGCTCATTGTATGCGCTGTTAAATCTCCCTCGTGGTACAAGCTTCTGTTTAATTACCGACATCAGAGGCTCTGCGAGGACGTGGAGCACAGCGTCTTCAATACCGGACGCTTTTCCAACTTCAGTCTGGACACAGAGCAGACGGACACAAGTGCTCAGGAGCTGGACACTGGACTGAGTCTGCAGCCCtttgaggatgatgatgatgatgatggttttATAGAGGACGGTTACATTGAGCCGGGAAACTACAAAGAACAAACGGATGCTAACGAGTCATGAGCAAGATCTCTGACAGAAGAAGAAGCTGGCTgtaaacgagaaaaaaaaagctacaaactCATGCATTAAACTATGAGGATCATTTTATTCCAGTGCAGTAAGGCAACATGAAAAAgccattaaaaattaaaaacccaaGGATCTCTGAACtggaaatgcaaatgcatgcatctcagcagattaaaaaaaatagtgtgtaaatgctgtaatttttgcttttaaaaaaaattattactcaATCTCTCTTTTTAAAAGCTTGTCAGTGATGTATGCAAGGATATAAACTGTTTGCATGTAGTTTTTTCTGCAGCatgtagaattatttaaaaagaagctCTGGCATGATTGAACTGAAGAGCAGTCATACTCAGGAGTACTCATCTGCTGCCCTCTTGTGCACAAACATGTAactgtgaaaaaacaaaactacttactctcttctctctgtgaATATCACGTCCATACTTTGAGCTTCTCTGTCATTCTGTGCTTTCAGCTAATGagacaaacataaaataaactcAGCAGGAATATGAGAAGAGCAAAGAGGAAGATGCTGCCATTTAAATGAAGTTGTCTCACCATGTTGATGTCATTCACGACTTCATCCATctcagtgtttgtgttcagCTTGTCAACTAGCTGATAATTAAAAGAGCATATAAAGAAGGTTTTATTGATTCAAAATAAAGAGACTTGTAGTACTTCCACTAATCGTTTTAAATTAGTGTACCATGTTGTAATCTGCCAGTTGCCCTTGAAGATCTTTTATTTCCCCAGCTAGGATTTCTGCTCTGTTCacagaaaaagttttaaaacatttaataaattcattacTGCATCCTAA

Function

NR:

description
PREDICTED: leucine-rich repeat-containing protein 19-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238643.1 False 1968 mRNA 0.42 5 29967407 29970909
XM_043238644.1 True 2320 mRNA 0.40 5 29967407 29970825

Neighbor

gene id symbol gene type direction distance location
sapcd2 LOC107742165,LOC107660368,LOC107565658 coding downstream 24230 29928823 ~ 29943177 (-)
LOC122344958 LOC107690080,LOC107566862,LOC107728455 coding downstream 47912 29910912 ~ 29919495 (-)
prrc2b prrc2b,LOC107704672 coding downstream 87304 29859552 ~ 29880103 (-)
fam78ab fam78ab,fam78a,LOC107704739,LOC107562331,LOC107674928,LOC107745627,LOC107741498,LOC107597938 coding downstream 120417 29838639 ~ 29846990 (-)
gpsm1b LOC107741501,LOC107704761,LOC107562333,LOC107597941,LOC107674924,LOC107744057 coding downstream 268781 29673233 ~ 29698626 (-)
LOC122344968 mob3b,LOC107558072,LOC107563392,LOC107721040,LOC108414757 coding upstream 26527 29997436 ~ 30005969 (-)
thap1 thap1,LOC107563391,LOC107684196,LOC107687269,LOC107558071 coding upstream 36090 30006999 ~ 30012009 (-)
june LOC107687249,LOC107721038,LOC107563389,LOC107684195,LOC107735627 coding upstream 56921 30027830 ~ 30034212 (-)
trabd2a trabd2a,LOC107558059,LOC107570885,LOC107717329 coding upstream 151317 30122226 ~ 30164017 (-)
mbd2 mbd2,LOC107717343,LOC107565141,LOC108438699,LOC108260323,LOC105902559 coding upstream 520122 30491031 ~ 30511279 (-)
G40268 LOC107741500,LOC107562332,LOC107704753 non-coding downstream 161605 29801194 ~ 29805802 (-)
G40266 NA non-coding downstream 281680 29685128 ~ 29685727 (-)
G40264 NA non-coding downstream 320394 29646617 ~ 29647013 (-)
G40083 NA non-coding downstream 1636931 28326897 ~ 28330476 (-)
G40081 NA non-coding downstream 1674470 28292726 ~ 28292937 (-)
LOC122344857 NA non-coding upstream 68545 30039454 ~ 30046148 (-)
LOC122345788 NA non-coding upstream 82703 30053612 ~ 30054797 (-)
G40422 NA non-coding upstream 134933 30105842 ~ 30106738 (-)
G40418 NA non-coding upstream 145499 30116408 ~ 30117863 (-)
G40654 NA non-coding upstream 326485 30297394 ~ 30419407 (-)
LOC122344966 LOC107749532,LOC107566852,LOC107742171,LOC107565644,LOC107690083 other downstream 38732 29924702 ~ 29928675 (-)
eng LOC107562335,LOC107704777,LOC107741503 other downstream 312346 29614719 ~ 29655061 (-)
G40182 brinp1,LOC107715673,LOC107674904 other downstream 477203 29460585 ~ 29490204 (-)
LOC122345120 LOC107728794,LOC107696375,LOC107590009,LOC107739482 other downstream 641292 29323982 ~ 29326115 (-)
G40080 pappaa,pappa,LOC107556005,LOC107558864,LOC107739977,LOC107675511,LOC107728218 other downstream 1702703 28255828 ~ 28264704 (-)
rnf170 rnf170,LOC107721034,LOC107687247 other upstream 117057 30087966 ~ 30093576 (-)
fubp3 fubp3,LOC107689604,LOC107687236,LOC106566971 other upstream 619934 30590843 ~ 30613141 (-)
G40711 NA other upstream 660119 30631028 ~ 30733360 (-)
G40713 lzts3,LOC107567954,LOC107687254,LOC107574519,LOC795227,LOC107665914 other upstream 818724 30789633 ~ 30792719 (-)
G40752 hspa5,LOC107686379,LOC107743071,LOC107687227,LOC107567952,LOC107734417,LOC107734415,LOC107686377 other upstream 846823 30817732 ~ 30826358 (-)

Expression


Co-expression Network