thap1 (thap1,LOC107563391,LOC107684196,LOC107687269,LOC107558071)


Basic Information

Item Value
gene id thap1
gene name thap1,LOC107563391,LOC107684196,LOC107687269,LOC107558071
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 30006999 ~ 30012009 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238648.1
ACCTCACCGAGCGAGAGCTCTCTCAGTCAGCCATGTAAAGTGCAGGCGACGGGATCCTGTTCCCAGCGAATATTATTCCTGATCTTCATATTTCAGATCGCAGTGAAACATGGTTCAGTCCTGCTCGGCGTACGGATGCAAAAACAGATACCACAAAGATAAAAACATCTCCTTTCATAAGTTTCCTCTGGCCCGGCCGGACATCTGCGGGAAATGGGTGACCGCTATGAAGAGAAGAAACTTCAAACCCACTAAATACAGCAACATCTGCTCTCAGCACTTCACCAGAGACTGCTTTAAACGTGAATGCAACAACCGTGTGCTGAAGGACAACGCCGTGCCTTCGCTCTTCACCTTCAGCAAACTACAGATGCAGGCAGCGTCTCTGCAGGACTCCTTCAGCCCAGACATGACCTTTCCTCTGAGCCTGCCTCTGTCTGAAGCGGAGGAGACGCCGGCGGCGGGGCGTCCGTCTGAAGACCAGCCCGGACCCATCCTTCACACCAGCGCCTTCGTCTCCTGTGACCACAACTACACGGTGGAGGACACCGTCCAGCAGAAGAGACGCATCGAGCAGCTGCAGGAGCAACTGGAGAAGCTGCGCAAGAGACTGAAGACGGTCCAGCAGAAGTGTCGGAGGCAGGAGAGACAGCTGGAACGCTTCCGGGCCATGAGCGAGGTCCAGAGAGACGCGGCGCTCGGGGACAGCTACGTGATCCTGCCCAAAGAGATCTACGACGTTCTGAAGGGAATAGAGACCATCGGTGCGCTGTGAGATCCAGAGAGTCACGTGGAAGAGGTTTTAGCTTTTCCTTTAGGAGTGCTTTTAATTCTGTCAGTCGTGActtgtgttctgagtgtgtgtgagcatcaggTTCAGCTGCTGGGTGTCTATCGGATCTGCTCACAGATCTCTGTGGAACACAGTGTCCTTTTAGGAGAGGATCGTCAGCTTCAGAGCAGAACTCGCTCAACATGCAATAACTGCGTGAGAGGATTCAGGAGCGATGGTGATCGTCTGGTGCGCTCCGAGAAACCAAACCCTTTAGCACTAGTCCTGAGCTCAGATGCCAGAGGAGCCGGTGGACCAGAGACTCTGTGACAAACCCTTCAGTAAATCAGGTCCTCGTTATCTGCAGATTTGTGCAAATGACCGCAGATCAGTGTTCGTtctgttattaaatgttttttttttctaatttaaaccTCTAGAATTTATACTGACtagtttattttgaattgattAATGTACTAAGATGACCAAACTTCACTAAACATGTTTTCAGTAGCCATAGAGTCACATATCAAAGGGCTTTGAGCTGTTTCTCGTCGTTTTTCACCCCTTgctgattcatttattattcacaaAACTTTAATAACTGTGGAATCGATTCAAGCCATATATGggtaaaaatagattttttgctGGGAAGACTTCAATCATAGTTGCCTTACGGTCACAGTGCAATTGTTCATATGTTTGAGTGTTTCTCTCATTCTTGACCTGATCTTGTGCTTGAATGAGTTTCATGTCACGCTTTATAACTGTCctgtacacacacgcacacacacacgcacacacacacgcacacacttatGGTCAGTAGCTGGTCAGATTTTAAAGACACCACCCTTACAAAACTCTATACCACAATAACGAAAGTATCCACCAAAATATGAATTACTACACTTGGATcataacaaatgaaaatgataaagtaTTCAAA

Function

symbol description
thap1 Predicted to enable DNA-binding transcription factor activity and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleoplasm. Predicted to be active in nucleus. Is expressed in head. Human ortholog(s) of this gene implicated in torsion dystonia 6. Orthologous to human THAP1 (THAP domain containing 1).

NR:

description
PREDICTED: THAP domain-containing protein 1-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007049 cell cycle biological_process
GO:0005654 nucleoplasm cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K23203 THAP1_3; THAP domain-containing protein 1/3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238648.1 True 1727 mRNA 0.47 3 30006999 30012009

Neighbor

gene id symbol gene type direction distance location
LOC122344968 mob3b,LOC107558072,LOC107563392,LOC107721040,LOC108414757 coding downstream 1030 29997436 ~ 30005969 (-)
LOC122344964 LOC107721044,LOC107563395,LOC107558067 coding downstream 36090 29967407 ~ 29970909 (-)
sapcd2 LOC107742165,LOC107660368,LOC107565658 coding downstream 63822 29928823 ~ 29943177 (-)
LOC122344958 LOC107690080,LOC107566862,LOC107728455 coding downstream 87504 29910912 ~ 29919495 (-)
prrc2b prrc2b,LOC107704672 coding downstream 126896 29859552 ~ 29880103 (-)
june LOC107687249,LOC107721038,LOC107563389,LOC107684195,LOC107735627 coding upstream 15821 30027830 ~ 30034212 (-)
trabd2a trabd2a,LOC107558059,LOC107570885,LOC107717329 coding upstream 110217 30122226 ~ 30164017 (-)
mbd2 mbd2,LOC107717343,LOC107565141,LOC108438699,LOC108260323,LOC105902559 coding upstream 479022 30491031 ~ 30511279 (-)
LOC122345124 si:zfos-128g4.1,LOC107675886,LOC107577831 coding upstream 508597 30520606 ~ 30523419 (-)
LOC122345715 LOC107687242,LOC107717337,LOC107558070 coding upstream 523825 30535834 ~ 30537915 (-)
G40268 LOC107741500,LOC107562332,LOC107704753 non-coding downstream 201197 29801194 ~ 29805802 (-)
G40266 NA non-coding downstream 321272 29685128 ~ 29685727 (-)
G40264 NA non-coding downstream 359986 29646617 ~ 29647013 (-)
G40083 NA non-coding downstream 1676523 28326897 ~ 28330476 (-)
G40081 NA non-coding downstream 1714062 28292726 ~ 28292937 (-)
LOC122344857 NA non-coding upstream 27445 30039454 ~ 30046148 (-)
LOC122345788 NA non-coding upstream 41603 30053612 ~ 30054797 (-)
G40422 NA non-coding upstream 93833 30105842 ~ 30106738 (-)
G40418 NA non-coding upstream 104399 30116408 ~ 30117863 (-)
G40654 NA non-coding upstream 285385 30297394 ~ 30419407 (-)
LOC122344966 LOC107749532,LOC107566852,LOC107742171,LOC107565644,LOC107690083 other downstream 78324 29924702 ~ 29928675 (-)
eng LOC107562335,LOC107704777,LOC107741503 other downstream 351938 29614719 ~ 29655061 (-)
G40182 brinp1,LOC107715673,LOC107674904 other downstream 516795 29460585 ~ 29490204 (-)
LOC122345120 LOC107728794,LOC107696375,LOC107590009,LOC107739482 other downstream 680884 29323982 ~ 29326115 (-)
G40080 pappaa,pappa,LOC107556005,LOC107558864,LOC107739977,LOC107675511,LOC107728218 other downstream 1742295 28255828 ~ 28264704 (-)
rnf170 rnf170,LOC107721034,LOC107687247 other upstream 75957 30087966 ~ 30093576 (-)
fubp3 fubp3,LOC107689604,LOC107687236,LOC106566971 other upstream 578834 30590843 ~ 30613141 (-)
G40711 NA other upstream 619019 30631028 ~ 30733360 (-)
G40713 lzts3,LOC107567954,LOC107687254,LOC107574519,LOC795227,LOC107665914 other upstream 777624 30789633 ~ 30792719 (-)
G40752 hspa5,LOC107686379,LOC107743071,LOC107687227,LOC107567952,LOC107734417,LOC107734415,LOC107686377 other upstream 805723 30817732 ~ 30826358 (-)

Expression


Co-expression Network