LOC122344972


Basic Information

Item Value
gene id LOC122344972
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 30576288 ~ 30580328 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238652.1
CACGGCAAAGACGTTTCTTAGAAATATTATGCGTACGATCAAATCTATGAAGAAACGAGGCCCTGAGATCTACACGAGAGAGACTCCTTCACCGCTTCGTTCATTGATTTCGTTCACGTTCAGAAGActaacacacaaaaatgaataaatgaaatgtaaacagTGTTTAGTCCCAGACTGctttgtgttgttaaaagcactaaatAGAAATTGGAGCAGTtctgtttaaataattgttGTAAAAATAGCTGTTTAACTCTCTCTGTTATAATTgctttttacattctttttcaATTCAAGCTAAAACTTTTGCTGTGCATGTATATATCAGATTTTCAGACTGGGGGTTATTTCTCCATCTCaagatgttttgtgtgtttgaggaAAGCTGCTGTTGGGTTCAGTTCAGACTGGATGGTGCCGGTCAGGagagctgaccaatcagagacgCCGTTCTTGATGATGTTCACGTCATCAATCTGAGAGACGCTCTCTAGATCATTCCAGCTCCAGCCTTTCCTGTGTCCTGTGTGTCTCCGGAGAAGAGAAGAAACTCGGACGTAAAGGAGCATGTCTTTGAGCGATTGGCTCTACCCCGGAAATCCCAAAAGAAGGGAGAAGGTTATCCGCAGGAGTCAAGAGCTTCTTGAGCTGATGAAAAACAACTTTCGAGCCACCAACAGTCTCTCTGAGATCGTAAATAAGCACCTGGGTTCATCGTTCGACCCCATCGCTCTGGACGAGAGAGCCACCGTGAAGGAGAACTGTGAAGTGATGATTGAACGCGTGAATCAGATCCAAGCTAAAGTCGAGGAGGTTAACGAGGAGCTGAAGAATAAGCTGGATCCTGCCATGTATGAGCAGCTACAAAAAATGTCGTTCCACGACCTCAAAACTCTTTCGGTTGCTCAGAAACGTGTAATCTCCTCAACCTGCCAGGTTTCAGCCGCGATTATAGTGACggttctgatgaaaaaaatacgCGTTCTGACGAACATAACGTCCACGTGTGTTAGAGTTGTGGGAGGGATGATTGCCACCTTCGTGGTTGGGCTGTTAATCGATTTGATCGCTTCGGCTATCATAGGGCATTATGAGCGTAAACATCTGGAGGAGGCCCTGGAAGACCACGAGAAGGTTTTGGTAGAGTTCAGGCCAGCATCTGAACAATACCAGGACGCCATAGCTGAAGTGAAGGCTgtgattgcatttttataagAAGGAATACACTCTATATACAAATAACAGattgaaagcaaaaattatgtctcattttaaatgagtaataAAAACTGAAGCCAGAAGAATAATGTTCCTGTGgtgaaataaatgattagtGATACCTTCAAAAGACTTTCAGATTTCACCTTAGCAAGTCGTAgattgctgttttatttatagaacACTAATTTCAATCCGACAAAAATATTTGCTGTAATCGAAAACATGCACGCAATTAACTTTACTCCTAAAAGCATGCACGGAATTGAGATGGATGAGCTTGAAATAAACTGCAGATTCAAACATGGTCTCGTTTATTAAAGGAGAATATTTCACATGCGTCACAGCCATCTTCAGGTATGGAAATGTGGAAAAGAAAGCTAAAGCTCCAATCTCCTCGTGAAAAAGTGTCTTGGTGAAGCTCGACGTCACACTACCAATATAAACATATCCTTGACTTATATCCCTAGACATCTACACGGCATTAGAGCAGCatgctttcatttttcaatgtcttcaaatatttgttttggttaaTTTTTTACGTGCTAACATGAACTGTTTACTGAAATgtagttcagttcagttcagttttggTACGTCAGTCAGATTCGATCCTTTCCTTTTCACCGCCGcacataatattaatgataGTGTCTTGAGAGGGACTCTCTTCGGGGAAAGGGAAATAAAAACCAATGTGCTTTTCCTAAGAgataatgagctctgctgatcAAActctgcttttttaaatgtgagcTACTTTCAATTAAAGAATGCATAACAGGAACCAAATAAATCAAGACTGATGGCTTGTAGTACATGAAAAACTCAATTAGAATGTGATACAGAACCAAGACTTTCCATCACTTTTGGGACACAAACAGGAGCAGAGATAAgtacttctgttttttttataggatTGAACTGTAATTATTTGTCAGCCAGACTAAA

Function

GO:

id name namespace
GO:0009063 cellular amino acid catabolic process biological_process
GO:0009078 pyruvate family amino acid metabolic process biological_process
GO:0009080 pyruvate family amino acid catabolic process biological_process
GO:1901605 alpha-amino acid metabolic process biological_process
GO:1901606 alpha-amino acid catabolic process biological_process
GO:0046395 carboxylic acid catabolic process biological_process
GO:0042851 L-alanine metabolic process biological_process
GO:0042853 L-alanine catabolic process biological_process
GO:0044282 small molecule catabolic process biological_process
GO:0042594 response to starvation biological_process
GO:0031667 response to nutrient levels biological_process
GO:0006522 alanine metabolic process biological_process
GO:0006524 alanine catabolic process biological_process
GO:0009991 response to extracellular stimulus biological_process
GO:0016054 organic acid catabolic process biological_process
GO:0005102 signaling receptor binding molecular_function
GO:0005179 hormone activity molecular_function
GO:0030545 receptor regulator activity molecular_function
GO:0048018 receptor ligand activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238652.1 True 2175 mRNA 0.40 2 30576288 30580328

Neighbor

gene id symbol gene type direction distance location
LOC122344973 NA coding downstream 33848 30540497 ~ 30542440 (-)
LOC122345715 LOC107687242,LOC107717337,LOC107558070 coding downstream 38373 30535834 ~ 30537915 (-)
LOC122345124 si:zfos-128g4.1,LOC107675886,LOC107577831 coding downstream 52869 30520606 ~ 30523419 (-)
mbd2 mbd2,LOC107717343,LOC107565141,LOC108438699,LOC108260323,LOC105902559 coding downstream 65009 30491031 ~ 30511279 (-)
trabd2a trabd2a,LOC107558059,LOC107570885,LOC107717329 coding downstream 412271 30122226 ~ 30164017 (-)
ass1 ass1,LOC107740768,LOC107687233,LOC107689608 coding upstream 41876 30622204 ~ 30644747 (-)
surf4 surf4,LOC107740232,LOC107689610,LOC105890423,LOC103376134 coding upstream 65958 30646286 ~ 30652310 (-)
surf2 surf2,LOC107740795,LOC107581206,LOC107743090 coding upstream 72835 30653163 ~ 30655957 (-)
ciz1a ciz1a,LOC107687257,LOC107571633,LOC107740230,LOC107689607 coding upstream 79791 30660119 ~ 30672096 (-)
golga2 golga2,LOC107658391 coding upstream 153776 30734104 ~ 30754940 (-)
G40698 NA non-coding downstream 6188 30567251 ~ 30570100 (-)
G40672 NA non-coding downstream 10132 30565684 ~ 30566156 (-)
G40670 ythdc2 non-coding downstream 11911 30564117 ~ 30564377 (-)
G40684 NA non-coding downstream 57833 30516065 ~ 30518455 (-)
G40680 NA non-coding downstream 63318 30504796 ~ 30512970 (-)
G40701 NA non-coding upstream 9869 30590197 ~ 30590640 (-)
LOC122345983 NA non-coding upstream 128445 30708773 ~ 30710678 (-)
G40708 dnm1,LOC107568151,LOC107658356 non-coding upstream 139864 30720192 ~ 30725226 (-)
G40739 NA non-coding upstream 190386 30770714 ~ 30772024 (-)
G40751 hspa5,LOC107687227,LOC107567952 non-coding upstream 240797 30821125 ~ 30846878 (-)
rnf170 rnf170,LOC107721034,LOC107687247 other downstream 482712 30087966 ~ 30093576 (-)
LOC122344966 LOC107749532,LOC107566852,LOC107742171,LOC107565644,LOC107690083 other downstream 647613 29924702 ~ 29928675 (-)
eng LOC107562335,LOC107704777,LOC107741503 other downstream 921227 29614719 ~ 29655061 (-)
G40182 brinp1,LOC107715673,LOC107674904 other downstream 1086084 29460585 ~ 29490204 (-)
LOC122345120 LOC107728794,LOC107696375,LOC107590009,LOC107739482 other downstream 1250173 29323982 ~ 29326115 (-)
fubp3 fubp3,LOC107689604,LOC107687236,LOC106566971 other upstream 10515 30590843 ~ 30613141 (-)
G40711 NA other upstream 50700 30631028 ~ 30733360 (-)
G40713 lzts3,LOC107567954,LOC107687254,LOC107574519,LOC795227,LOC107665914 other upstream 209305 30789633 ~ 30792719 (-)
G40752 hspa5,LOC107686379,LOC107743071,LOC107687227,LOC107567952,LOC107734417,LOC107734415,LOC107686377 other upstream 237404 30817732 ~ 30826358 (-)
LOC122344987 LOC107591496,LOC107663763,LOC107725109,LOC107734348,LOC107563429,LOC107654309 other upstream 751021 31331349 ~ 31350449 (-)

Expression


Co-expression Network