foxn4 (foxn4,LOC107654613)


Basic Information

Item Value
gene id foxn4
gene name foxn4,LOC107654613
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 5621069 ~ 5629286 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238672.1
GTCTTTATTTAGACCcgtataaaaataatgcttcCACTTGTACATAGATGAACGACAATCAGGAACTCTTTCAGGCTGCGTGTTATTTCGCGTTGCCCGTGGTTACAAGGGATCGTGGAAATCACTGCTCACTTTGCCGCAGGTCTCGGGGTTCATAGAAGTTCTCGTTCGCTTACAGGAATCCGTAGCTTGTGAAACAAAGCTTCCGGTAGAAAAAGAGGATTTTGTTTAAACTCTCAGCTTTTTGGGGTTTTTGGAAGTCGCGCACCTGTggactactactactactactacacacacacgcacgcgcgcgcgcgcacaaagcacggaggaaaaaaaaacgcacgTCTTTGAGGAAAGCAAGTTTCGGTTAAATAAAAGCACCGGACACCAGGTGAGATGCTCTGACAGATGATTTAGGTGGTTGTGGAGGCAAGGCAACAGCTGTCAGTCAGAGCTCGGACCCCCTCCTCTCCTCGCGCAGTGCGCATGACCGTCGGGAGAGAACCGCACAGGCGAGGGAAATTTAAAAAACGGTTTTTTCTTGCGGGACAACAAGTGCCCCGACCAACAGTAGAGCTTTCCTCCGTCTCGTTATCCCAGATTTTCTATACCGCAGAACAACTGCGGCATTAACAGAAGATGATCGAAAGTGGAATTACGAGCAGGATGTCAGGAATTCACGAAAACCCTGCGCAAAGTCACCACACCTCCGCACAAGACTACAGACTCCTGACTACTGACCCTTCGCAGCTGAAGGACGAGCTGCCTGGTGATCTTCAGTCCCTGTCCTGGCTCACCTCCGTGGATGTTCCCCGTCTGCAGCAGATAGGATCTGGACGAGCTGATTTTGCCGGTTCTGCTCAGAATAGCCTGCTGGAGCGGCAGACAGCTCAGCTGAACAGCATGACGGTAGCAGGAGCAGCAGGGTCCGCGATTCATCTACAGACTGAAATGCAGCACAGCCCTCTGGCCATCAGCAGCATGCCCCAGTTTTCCCCTGGGTTTCCGTGTGCTGCGTCAGTATACCAGACTGCACCTCAACAAGTTCTCACTTTCACTCAGGCAAACCAACAGTGTTCTCCCGGTGGGCTTTATGGCAACTACAACAACCAGAGCCTGTTTCCTCAAGCTCGTATTACTGCTCACAACCAGGACCTGCAGCCCAAGACTTTCCCTAAACCCATCTACTCCtacagCTGTCTGATCGCCATGGCTTTGAAGAACAGCAAAACGGGCAGCCTTCCTGTTAGTGAGATCTACAGCTTTATGAAAGAGCACTTCCCTTATTTCAAGACGGCACCTGACGGATGGAAAAATTCTGTACGCCACAACCTGTCCTTGAACAAGTGCTTCGAGAAGGTGGAGAACAAGATGAGCGGTTCTTCCAGAAAGGGCTGTCTTTGGGCACTCAATCCTGCAAAGATCGATAAAATGGAGGAAGAGATGCAGAAATGGAAACGCAAAGATCTCCCAGCCATCCGCCGCAGCATGGCCAATCCAGacgaaCTAGACAAACTCATTACAGACAGACCGGAGAGCTGCAGACAAAAGTCCATCGAGACTGGCATGACTCGCCTGCCCAGCTGCCCACCAGGGCCCACCCTCCCAATCCCAGCGCAGATGCAGCCCCAGCCAGtggtcactctctctctccagtgCCTCCCTATGCATCAGCACCTTCAAATGCAGCTCCAGAATCAGTCCCGCCTGGCTCCGGCCTCCCCCGCTCCCGCTCAGACACCCCCCCTCCACACCATCCCCGACCTGGCAAACAGCTCCCTCCCTCAGCATCCCGCCAAGCAGCACGGCGACTTCTACACGGTTCACACCGACGTGAATTCAGAGGTGGACGCGCTGGACCCGAGTATCATGGACTTCACCTGGCAAGGAAACCTGTGGGAGGAGATGAAGGACGACAGCTTTAACCTGGAGGCATTAGGTACACTCAGTAACTCCCCACTTCGGCTGTCTGACTGTGACCTGGACACCGGCAATGTCACACCTGTGTCCAACGCAGGAGGACTGCCTTACCCAGACCTGCAGGTGACAGGCCTCTACTCTTCATACTCGGCCGTGGATGCCCTTTCTAACCAGTACATGAACACACAGGGAGGAACAAAGCCTATCGTTTTGCTTTAATTGCACCGGCAAGAAATTAAACGGGCTGAGCTTTACTTCCCGGGGGACCCTCTATAAAGCTTtcaaactccaaaaaaaaacatctcgcAACACAGAATTCTTCCAAGGCAGCCAAAAATGATCGCAACAtcagaaagaaaacatgctCAACTAAAACGAGTAGCGTTTATGGTGACGTCGCAGTATTTAAAGTTGTCATTTGCATTGACTGTATTAACTGCATTAAATGCAATGGGTTTGAAGGGACCGAATCAGCGGTTGTAGAGAATCTGCAGGGTGAGGGAGTAGGACCGATTTCCTCTAAAAGCGCAGTCCGGTACGGATACTGGGATCGTGGCCAAACATAATCATACAAATTGCAGTGTTGTTATCACTATACGCCTAATGCAAATTGTGAgcaaacaacatttaaagaacaaagaTCAAATTATGGGAATTATGATTTTGAGTGTTGCCAAGCTTTTTACTGTAACATAAAAGGAACTTGTTTCCTTCTCATTTCGTCCATGTAACTGTTAGCCTTGTAACTGTAGTTGTGTGTCTTTTGTTGTACCGTGATAGACTGTATctgctctttgtttgttttattatttatatttatgaaaagaGCTGAAATGGTGacatgaataattttttattgtatatatctaaatattttgaatgcaagCAATAAAGTTTCACATTCAGATTGAAAGATGTATtaatctaactttttttttttaccagtgttgggaaggttactttggaaatgtaatgcaataaattaCAGATTGCCCTCA

Function

symbol description
foxn4 Enables DNA-binding transcription factor activity and sequence-specific DNA binding activity. Involved in atrioventricular canal development and heart looping. Acts upstream of or within heart valve development; positive regulation of transcription, DNA-templated; and regulation of heart contraction. Predicted to be active in nucleus. Is expressed in several structures, including forebrain neural keel; nervous system; optic vesicle; pericardial region; and presumptive neural retina. Orthologous to human FOXN4 (forkhead box N4).

NR:

description
forkhead box protein N4-like

GO:

id name namespace
GO:0048513 animal organ development biological_process
GO:0009888 tissue development biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0008016 regulation of heart contraction biological_process
GO:0007389 pattern specification process biological_process
GO:0051090 regulation of DNA-binding transcription factor activity biological_process
GO:0009790 embryo development biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0008134 transcription factor binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0008301 DNA binding, bending molecular_function

KEGG:

id description
K09407 FOXN; forkhead box protein N

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238672.1 True 2921 mRNA 0.48 10 5621069 5629286

Neighbor

gene id symbol gene type direction distance location
LOC122345133 LOC107752131,LOC107684984,LOC107595918,LOC107672624,LOC107741247 coding downstream 166313 5435977 ~ 5454756 (-)
ranbp1 ranbp1,LOC107684983,LOC107752129,LOC107597301,LOC107672632,LOC107741249 coding downstream 185938 5430566 ~ 5435131 (-)
LOC122346225 NA coding downstream 189675 5431264 ~ 5431394 (-)
golga3 LOC107684982,LOC107595916,LOC107741281,LOC107672616 coding downstream 191601 5412669 ~ 5429468 (-)
ankle2 ankle2,LOC107597302,LOC107684979,LOC107672626,LOC107741250,LOC107595914,LOC107752143 coding downstream 210575 5398894 ~ 5410494 (-)
kctd10 kctd10,LOC107597295,LOC107595924,LOC107672630,LOC107752136 coding upstream 18969 5648255 ~ 5653029 (-)
mmab LOC107752154,LOC107597358,LOC107654603,LOC107672637,LOC107741242,LOC107595926 coding upstream 39507 5668793 ~ 5671129 (-)
trpv4 trpv4,LOC107752140,LOC107741238,LOC107654595,LOC107672638 coding upstream 191066 5820352 ~ 5842997 (-)
gltpa gltpa,gltp,LOC107752155,LOC107654619,LOC107741237,LOC107597288,LOC107595968 coding upstream 214392 5843678 ~ 5849639 (-)
git2a git2,git2a,LOC107595928,LOC107752141,LOC107597287 coding upstream 229993 5859279 ~ 5884164 (-)
G33423 acacb,LOC107752147,LOC107654593 non-coding downstream 364 5618265 ~ 5620705 (-)
G33409 LOC107684993,LOC107597297,LOC106585658 non-coding downstream 18865 5601409 ~ 5602204 (-)
LOC122344984 LOC107597340,LOC107752133,LOC107684988,LOC107672606 non-coding downstream 23440 5574164 ~ 5597629 (-)
LOC122344983 LOC107684988,LOC107597340,LOC107752133,LOC107741245,LOC107672606 non-coding downstream 25895 5588045 ~ 5595174 (-)
LOC122345808 NA non-coding downstream 451820 5142578 ~ 5169249 (-)
G33434 NA non-coding upstream 24794 5654080 ~ 5654764 (-)
G33446 NA non-coding upstream 50397 5679683 ~ 5684284 (-)
G33533 NA non-coding upstream 266842 5896128 ~ 5897353 (-)
G33542 NA non-coding upstream 316703 5945989 ~ 5946874 (-)
G33544 NA non-coding upstream 323990 5953276 ~ 5959213 (-)
G33175 NA other downstream 998011 4622490 ~ 4623058 (-)
LOC122346168 srrm4,LOC107720865,LOC107702227,LOC107561260,LOC107656798 other downstream 1427988 4144856 ~ 4193081 (-)
piwil2 piwil2,LOC107560971,LOC107707823,LOC107702219 other downstream 1722491 3878650 ~ 3898578 (-)
coq5 coq5,LOC107560969,LOC107707852,LOC107656810,LOC107561264,LOC107702223,LOC107707851,LOC107560965,LOC101158254,LOC107755815,LOC107561265 other downstream 1868305 3744675 ~ 3752764 (-)
G32908 sema4c,LOC107697240,LOC107708238,LOC107699920 other downstream 2660892 2951462 ~ 2960177 (-)
G33758 LOC107596916,LOC107710760,LOC107700938,LOC107587412,LOC107693817 other upstream 1194885 6824171 ~ 6826182 (-)
usp20 usp20,LOC107691016,LOC107693839,LOC107710745 other upstream 1293560 6922846 ~ 6943203 (-)
G33998 LOC108444092 other upstream 1753060 7382346 ~ 7397153 (-)
LOC122345606 LOC107712378 other upstream 2077684 7706970 ~ 7711824 (-)
si:dkey-220k22.3 NA other upstream 2089279 7718565 ~ 7721758 (-)

Expression


Co-expression Network