wnt11f2 (wnt11,LOC107746349,LOC107548453,LOC107655896,LOC107596154,LOC107757514,LOC107700898)


Basic Information

Item Value
gene id wnt11f2
gene name wnt11,LOC107746349,LOC107548453,LOC107655896,LOC107596154,LOC107757514,LOC107700898
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 13376537 ~ 13379768 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238676.1
GACGGACACATTCAGCGTAGTTTCCTCGGTGTGCACCTTGAGCACTCGTAAAGACATCAGACCAGACTTCACTAGGATTTCTAAACGACAAAAGAGCAAAATGACAACATGCAGGAATTTCATTCTATTTTTCATCACGTCTTTTTGCGTGATTTATCCATGCGCGGCAATATCTTGGCTcGGTTTGACGGTGAACGGCAGCTCGGTGGGGTGGAATCAGACTCATCACTGTAAACTGCTGGACGGACTCGTCCCAGATCAGCTGCAGCTCTGCAAACGGAACCTCGAGCTCATGCACAGCATCGTGCATGCGGCCAGACTCACCAAGAGCGCGTGCCAGAGCTCCTTCAGCGACATGCGCTGGAACTGCTCCTCCATCGAGAGCGCGCCCCACTTCACCCCGGACCTGGCTAAAGGGACCCGTGAGGCAGCGTTTGTGTTCTCTCTGGCCGCCGCAGTGGTCAGTCATGCCATCGCCCGTGCCTGTGCTTCCGGAGAGCTCCCCAGCTGCTCCTGTGCACCAGCGCCCGCCGAGCAGGCAGCCCCAGACTTCCGCTGGGGTGGCTGCGGAGATAATGTCCGCTACGGCCTGCAGATGGGCTCGGCTTTCTCAGACGCACCCATGAGAAACCGCCGCTCAGGACCACAGGCCTTCAGACTCATGCAGCTCCACAACAATGCAGTAGGAAGACAGGCACTCATGGATGCTCTTGAGATGAAGTGCAAGTGTCACGGTGTTTCTGGCTCATGCTCTGTGAAGACCTGCTGGAAGGGCCTTCAAGACATCAACAGCATCTCTGCCGACCTCAAGTCTAAATATCTGTCGGCCACCAAGGTCATTCCACGCCAGATTGGCACCCGCCGACAGCTAGTCCCTCGTGAGATGGAGGTCAGGCCGGTGGGAGAGAATGAACTTGTTTATCTTGTCAGCTCGCCCGATTACTGCTCACAGAACGCCAAGCAGGGGTCATTCGGAACCACAGACAGGCAGTGTAACAAGACCGCGACCGGCAGCGAGAGCTGTGGACTCATGTGTTGTGGACGAGGGTACAATGCCTATACGGAAGTGCTGGTGGAGCGCTGCCAGTGTAAATATCACTGGTGCTGTTACGTGTCCTGCAAAACCTGCCATCGCACTGTTGAAAGATACGTCTGCAAGTGACAAAACCACACTTATGGACTGTCTTGACTGACAGAGAGAAGGATGAGCGGTGTGAATGTGTATGATCTTTTGGAGTCATAAGCGAGTGGATAATCCTCTCGGAGTGCTGTAAGGATGGCGTGAAAGTGAAGAAAGAAGAGCAGGACTTGAGGAATACGGGATGGTGAAAGAGTTAATGAATGGCTGTAAACAAAGATCCCTGCGGTGAGGCCCTCAAGGCACCCCGCAGAAAAGCAGAGTGATAAGTAGTGGTCGCTCACAGAAAAACTCATCAACTCTGGCACAGAGAAAGATACTTGGGGGGAGGGTAGGACTGTGGTGGTGAAGAGTTACTTTACTGTGGTAATACTTTACACATGACTGATCTAGTAAGAACTGTTTTGGGGCCAGTTGCATAAAATTGACAAGTTGTCTAAATTAAGTTACAAGCGTAGATTAGTCTAAGCTGAATACTAAAATAAGAGTGATTTGCTTTTGGATAACTGCTAGTTGGTCAAACTCGTATTGTAGAGGCTACGTTTATGCAACTGGCCCTTGGTCAGGTACATTTCATAGGTTCCACAGCAGCAAGAATTGGAATTCAAACTGTTTCATTTGGTTGACTTCAGAAGGTCTATGCACTCAGTATTGATTATGAAAGATTTGATGACACCATTGTATCCATTTTATTCAAGGACGAAGGCCATGCCTTTCACCCTgagaaattttgtacattttctgtaaaaaat

Function

symbol description
wnt11 Predicted to enable cytokine activity and frizzled binding activity. Acts upstream of or within embryonic morphogenesis; neuromast development; and pharyngeal system development. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in several structures, including cardiovascular system; fin; mesoderm; nervous system; and pharyngeal arch. Orthologous to human WNT11 (Wnt family member 11).

NR:

description
protein Wnt-11-like

GO:

id name namespace
GO:0030100 regulation of endocytosis biological_process
GO:0060898 eye field cell fate commitment involved in camera-type eye formation biological_process
GO:0090037 positive regulation of protein kinase C signaling biological_process
GO:0035567 non-canonical Wnt signaling pathway biological_process
GO:0031016 pancreas development biological_process
GO:0030182 neuron differentiation biological_process
GO:0051496 positive regulation of stress fiber assembly biological_process
GO:0043066 negative regulation of apoptotic process biological_process
GO:0000132 establishment of mitotic spindle orientation biological_process
GO:0090090 negative regulation of canonical Wnt signaling pathway biological_process
GO:0001839 neural plate morphogenesis biological_process
GO:0045860 positive regulation of protein kinase activity biological_process
GO:0070121 Kupffer's vesicle development biological_process
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0030308 negative regulation of cell growth biological_process
GO:0060021 roof of mouth development biological_process
GO:0007417 central nervous system development biological_process
GO:0060031 mediolateral intercalation biological_process
GO:0030335 positive regulation of cell migration biological_process
GO:0030336 negative regulation of cell migration biological_process
GO:0034394 protein localization to cell surface biological_process
GO:0001947 heart looping biological_process
GO:0008078 mesodermal cell migration biological_process
GO:0061101 neuroendocrine cell differentiation biological_process
GO:0001702 gastrulation with mouth forming second biological_process
GO:0005886 plasma membrane cellular_component
GO:0005615 extracellular space cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005109 frizzled binding molecular_function
GO:0030295 protein kinase activator activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238676.1 True 1890 mRNA 0.50 5 13376537 13379768

Neighbor

gene id symbol gene type direction distance location
eda eda coding upstream 4068 13342146 ~ 13372469 (+)
nalf2 fam155b,LOC107548493,LOC107746345,LOC107655916,LOC107596158,LOC107757536 coding upstream 38399 13334755 ~ 13338138 (+)
steep1 zgc:103697,cunhxorf56,LOC107548454,LOC107655899,LOC101478835 coding upstream 219300 13151621 ~ 13157237 (+)
stard8 LOC107757534,LOC107596160,LOC107548495,LOC107746344,LOC107700913 coding upstream 268965 13066436 ~ 13107572 (+)
yipf6 yipf6,LOC107596694,LOC107746343,LOC107757533,LOC107596161,LOC107655918 coding upstream 320177 13051667 ~ 13056360 (+)
igbp1 LOC107746347,LOC107700909,LOC107548490,LOC107655913,LOC107757539 coding downstream 3444 13383212 ~ 13387955 (+)
micu2 LOC107700905,LOC107746354,LOC107596152,LOC107655910,LOC107757544,LOC107548488 coding downstream 32852 13412620 ~ 13418968 (+)
nova1 nova1,LOC107757545,LOC107655909,LOC107700904,LOC107746355,LOC107548487,LOC103377877 coding downstream 39588 13419356 ~ 13437936 (+)
alkbh6 LOC107746424,LOC107548452,LOC107700897,LOC107655907,LOC107757515,LOC107596150 coding downstream 61680 13441448 ~ 13447200 (+)
capns1a capns1a,LOC107655908,LOC107700232,LOC107548486,LOC107746417 coding downstream 67587 13447355 ~ 13454224 (+)
G36109 NA non-coding upstream 52154 13324033 ~ 13324383 (+)
LOC122345423 NA non-coding upstream 63885 13299755 ~ 13312652 (+)
G36062 NA non-coding upstream 267684 13108632 ~ 13108853 (+)
G35905 NA non-coding upstream 490603 12885331 ~ 12885934 (+)
G35904 NA non-coding upstream 491253 12885005 ~ 12885284 (+)
G36140 NA non-coding downstream 140205 13519973 ~ 13521608 (+)
G36141 NA non-coding downstream 187209 13566977 ~ 13580798 (+)
G36168 NA non-coding downstream 268158 13647926 ~ 13648538 (+)
G36191 NA non-coding downstream 341017 13720785 ~ 13721566 (+)
G36198 NA non-coding downstream 352201 13731969 ~ 13732456 (+)
LOC122346073 LOC107654625,LOC107597279,LOC107741224,LOC107696048,LOC107727161 other upstream 569186 12803789 ~ 12807351 (+)
iscu si:ch211-191d15.2,iscu,LOC107597282,LOC104937683 other upstream 671292 12703352 ~ 12705245 (+)
si:ch211-225b11.4 si:ch211-225b11.4,LOC107743340,LOC107597327,LOC107654601,LOC107580265,LOC107735986 other upstream 847747 12514013 ~ 12528790 (+)
G35720 LOC107654642,LOC107597266,LOC107743332,LOC107741203,LOC107557123,LOC107663229 other upstream 1120865 12249138 ~ 12255672 (+)
smarca1 smarca1,LOC107597262,LOC107672796,LOC107741199,LOC107663213,LOC103034185,LOC105028962,LOC105893234,LOC106603320 other upstream 1433427 11924228 ~ 11943110 (+)
ins ins,LOC107596207 other downstream 604329 13984097 ~ 13985706 (+)
G36495 NA other downstream 910652 14290420 ~ 14292500 (+)
LOC122345142 NA other downstream 920275 14300043 ~ 14305304 (+)
LOC122345214 NA other downstream 953255 14333023 ~ 14337765 (+)
mrpl1 LOC107663378,LOC107746869,LOC107752362,LOC107599195 other downstream 967794 14347562 ~ 14349991 (+)

Expression


Co-expression Network