rhogc (rhogc,LOC107596156,LOC107655911,LOC107548489,LOC107700906,LOC108413814,LOC103046919,LOC105893231)


Basic Information

Item Value
gene id rhogc
gene name rhogc,LOC107596156,LOC107655911,LOC107548489,LOC107700906,LOC108413814,LOC103046919,LOC105893231
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 13409262 ~ 13411836 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238693.1
aGTTCGGATTTTTACTCTGAACTACACTACATTTCCCATAAGCCTTTGGGACATGGGCGTGTTCCTCAATGTCGTCTCCGTTACCCGTAAGTTGAAGAATGAGCCAGTGAGAGAAAAGGACTGCGAATCACatagaaacatttgttttaaatagcacAAAATATGTCCGTTTAAAATTATTTCGAGACTTCGTACGTGTGTACAAGTGTTGTACGGTTGTTACACATAGTTACAGACCACCGAGAGTTGTTGGTCCATGTTTAATAACTGATTAATGTGAGACTCATCCGCTAGTCGGTTAGCAAAGCGCCTTTGCCGCTGCGATGATGGAAACTTGAGCAGCTCAAAGGAAACACTCATCCAGCTCTTCAGACCATCCAAACACAggGTCCCTGTGCCAGGCAACAAAATGCAGACGATAAAGTGTGTTGTTGTTGGTGATGGTGCAGTGGGAAAGACCTGCCTGTTAATCTCATACACTACTAATGCCTTCCCAGACGAGTACATTCCTACGGTTTTCGACAACTACAGCACTCAGACCTGTGTGGACGGCCGGGCCGTCAGCCTCAACCTGTGGGACACGGCTGGTCAGGAGGAATATGACCGCCTGCGAACCCTCTCTTACCCACAGACGCATGTCTTCATCATCTGTTTCTCTGTGGCCAGCCCTTCCTCTCACGCCAATGTCCGGCATAAATGGCACCCGGAGGTGTGCCACCACTGTCCTGGTGTGCCTGTGTTGCTGGTAGGCACTAAGAGAGACCTGCGGGGGGACAAGGAGACCCTGGAGAAGCTGAAAGAGCAGGGGATGAGTCCCACCACTCCGCAGCAAGGCAGCGCATTGGCCCGCAGCATCGGTGCGGTGCGATATCTGGAGTGCTCGGCCCTTCTGCAGGAGGGCGTCAGAGAGGTCTTCAACGAAGCAGTCAGGGCTGTTCTCTACCCCAATGCCAAGAAGCACAGCAAGAAATGTGTGCTGTTATAACTTCGAGAgggtgtgtgcgtgagagattTTATTGAAGGGTGGAATTTCAGTTAGTCATGTGATTGTCTCTGCcaatgtgtgtttctgtcactTTTTGTTCATATCTCTACACTACAGTTAGCAATAGGTGCACAGACTGTTAAAGAGGAAGACTTGAggctgcgtgtttgtgtgtatttgtgtttcaaCTTTCCATACGTATTCAAGACAGAAATATGGTGTTTTGTGTTAATCTTAAGTCAGGCAGACCGAGGCAGTGGAGTGGAGTGGATTTGTCTGAAGGACTAACAGGCATTGACAACTTCAGCCTTCCCATAAGGCCTTAAAACCCcatcatatttttttaggaGTCACTCAGAGGATTTTTCATGCACCAAAGTGTTAATTCAGTCTAAATTTAGACTGGGTGTCTTTTGAAGGTGCTGTCTTTATCCTACCGCATCAATAACACAATTGTCAGGGCTCACAATTCACCTGATATGcgtgttattttaatgtgagaTTCTAAGACTTGATGACCTACACTTACCACAACATGCCATTTTTCTTGTATTGTTGCCTTTGTAGAGTTGATCGACTTTTAAATCAGGAAGTGCTGTGGAATCCCAGCGTGCCTTTAGTGCTTGGCCCCTTCTCTGACATCTCATAAACTCCTTCCTCTCTGCTCATTTCATCTAGGGTGCTACTTAGGGTGCCAGTTGACATTTATTGCTGGAAAGGACTGTTGAAAGTTTACAGAGAGCTTTTGTAGCTCACCTGCCTTCTATTAGAGTTGTAAATGAAGGGATATAGTGCTGTTTTATAACACTCTTGAGGTAGAAATGAAGATCTTTGTATTCGGCCCACTGTGCCTGAATCCTCACAATTTACAACCCTGTTTTTGAAACTGAAGTGCCactaatattttgtattatttgtattttaccaTGAATGTTGATCCACTCCAATGAAGTGCCCTAATAAGAACTGACGGAGGAGATAAACACTCTGTCTTTAATCTCCGTTGCAATGAAACATCCAAACTAGTTAATGTGCACAAACATTCAGGTTTATACTTCATTTGGGtccacatttacattttatatattgaatGTCTACTTTTTATATGATaaacatcagtgtttttttttttttccaacaattttgtttttaggaCATCAATAACACACCAAAATTGGctcttttattaaaactgtttttatttttttaacctgtcattattttaagaatatacCTCCACTTGCATGAGAAAATAAACcagttttaaagtgaaa

Function

symbol description
rhogc Predicted to enable GTP binding activity; GTPase activity; and protein kinase binding activity. Predicted to be involved in several processes, including Rac protein signal transduction; cytoskeleton organization; and engulfment of apoptotic cell. Predicted to act upstream of or within small GTPase mediated signal transduction. Predicted to be active in several cellular components, including cell cortex; cytoplasmic vesicle; and cytoskeleton.

NR:

description
ras homolog gene family, member Gc

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238693.1 True 2259 mRNA 0.43 2 13409262 13411836

Neighbor

gene id symbol gene type direction distance location
taf1 LOC107746351,LOC107700907,LOC107655912,LOC107757541 coding downstream 1315 13392656 ~ 13407947 (-)
zgc:158432 NA coding downstream 17305 13388012 ~ 13391957 (-)
trnap-agg_13 NA coding downstream 33562 13375629 ~ 13375700 (-)
efnb1 efnb1,LOC107746350,LOC107700912,LOC107548494,LOC107596159,LOC107757535,LOC107655917 coding downstream 105566 13270402 ~ 13303696 (-)
rxfp2l rxfp2l,LOC107655900,LOC107700901,LOC107596199,LOC107757506 coding downstream 258724 13118367 ~ 13150538 (-)
ckma ckma,LOC103045415,LOC107693439,LOC107596144,LOC107700235,LOC107548480,LOC107746363 coding upstream 105807 13517643 ~ 13521568 (-)
kptn kptn coding upstream 153330 13565166 ~ 13568196 (-)
ftr84 LOC107746428,LOC107700242,LOC107548471,LOC108437047 coding upstream 200825 13612661 ~ 13618357 (-)
il13ra2 LOC107700247,LOC107746374,LOC107693451,LOC107710577,LOC107548444,LOC107596132 coding upstream 234812 13646648 ~ 13653051 (-)
wdr44 LOC107548463,LOC107700250,LOC107746376 coding upstream 308945 13720781 ~ 13732483 (-)
G36200 eda,LOC107757537,LOC107700911 non-coding downstream 35507 13370210 ~ 13373755 (-)
G36108 NA non-coding downstream 86040 13322931 ~ 13323222 (-)
G36104 NA non-coding downstream 91800 13317235 ~ 13317462 (-)
G36063 NA non-coding downstream 300314 13108699 ~ 13108948 (-)
G36048 NA non-coding downstream 352557 13055569 ~ 13056705 (-)
G36230 NA non-coding upstream 808 13412644 ~ 13414387 (-)
G36229 NA non-coding upstream 3040 13414876 ~ 13418962 (-)
G36227 alkbh6,LOC107746424,LOC107700897,LOC107548452,LOC107655907 non-coding upstream 34785 13446621 ~ 13447119 (-)
G36218 LOC108260116 non-coding upstream 150818 13562654 ~ 13563898 (-)
LOC122345175 NA non-coding upstream 207190 13619026 ~ 13643325 (-)
G36047 NA other downstream 354405 13053844 ~ 13054857 (-)
G35936 NA other downstream 903304 12501914 ~ 12505958 (-)
G35825 tenm1,LOC107557119,LOC107713050,LOC107597323,LOC107741271 other downstream 1089577 12317803 ~ 12319685 (-)
sh2d1aa sh2d1aa,LOC107713049,LOC107741293,LOC107663232,LOC107557102 other downstream 1239852 12165403 ~ 12169410 (-)
msna msna,msn,moes,LOC107746233,LOC107597256,LOC107672695,LOC107663223,LOC107741191 other downstream 1593318 11795656 ~ 11815944 (-)
h3f3c h3f3b,H3F3A,LOC101073377,LOC105909691,LOC107388308,LOC105888650 other upstream 167225 13579061 ~ 13582290 (-)
lrch2 lrch2,LOC107700248,LOC107746375,LOC107710563 other upstream 242458 13654294 ~ 13699226 (-)
G36298 NA other upstream 305288 13717124 ~ 13718543 (-)
G36336 NA other upstream 405906 13817742 ~ 13818942 (-)
LOC122345901 NA other upstream 433567 13845403 ~ 13848070 (-)

Expression


Co-expression Network