usp39 (usp39,LOC107662055,LOC107739996,LOC107702962,LOC107722749)


Basic Information

Item Value
gene id usp39
gene name usp39,LOC107662055,LOC107739996,LOC107702962,LOC107722749
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 27288172 ~ 27293486 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238696.1
GTGAGGGCGGGAGTTTTGTAGCGCTCGCAGAAGACGTTTGAAAAGTGTTCATTCAACACTTAACACTAGAAACGATCCCGATATTAAACGTAAAATGATCGCAGGCGTGAAACGGGAGAGGGATGTTGATGACGACGAAGAGGAAGAGGTGCGTGTGAAGATTGGTCGTTCTCATGGTGTCGAAGATAAAAGAAGCCGCCATTGTCCATATCTGGACACTATCAACAGGAGTGTTTTGGATTTTGACTTTGAGAAGCTTTGTTCAATCTCTCTCTCCCACATTAATGTCTATGCCTGTCTGATCTGTGGGAAATATTTCCAAGGTCGAGGTCAGAAGTCTCACGCGTACATCCACAGTGTTCAGTTCACACACCATGTTTTCCTGAATCTCCACACATTAAAGTTTTACTGCCTGCCAGACAATTATGAGATTATTGACTCCTCATTAGAGGACATTACGtaTGTGCTGAAACCCACGTTCACCAAACAGCACATCGCTGGTCTGGACAAGCATGGAAAGCTGTACAGAGCCTACGATGGCACCACCTATTTGCCAGGAATTGTGGGTCTCAATAATATTAAGGCCAATGACTATGCTAATGTGGTTTTGCAGgCACTCTCAAACGTGCCTCCCCTACGGAACTACTTCCTTGAGGAGGACAACTACTGCAGAATCCGCCGGCCGCCGGGTGACATCATGTTTCTGTTGGTGCAGCGCTTTGGGGAGCTCATGCGTAAGCTCTGGAACCCGCGCAACTTCAAAGCCCACGTGTCGCCACACGAGATGCTGCAGGCTGTGGTGTTATGCAGCAAAAAGACCTTTCAGATCACTAAACAAGGGGACGCTGTTGACTTTCTGTCCTGGTTTCTCAATGCATTGCATGGCGCTCTTGGTGGGACAAAGAAGAAAACATCAATCGTCACCAAGGTGTTTCAGGGGTCCATGCGAATCTTCTCAAAGAAGCTGCCTCATCCAGATTTGCCTGCAGAAGAGAAAGACGCCCTTCTGCTCAAGGACGAGTACCAGGAGAAGATGTCTGAGTCCACCTTCCTGTACCTGACGCTGGATCTGCCCACAGCACCCCTCTACAAAGATGAGAAAGAGCAGCTCATTATTCCTCAAGTTCCTCTCTTCAACATCCTGGCTAAGTTCAATGGAAACAATGAGAAGGAGTACAAGACATACAAAGAGAACTTTCTGAAAAGGTTCCAGCTCACCAAACTTCCTCCGTACCTCATCTTCTGCATCAAACGATTCACAAAGAACAACTTCTTTGTGGAGAAGAACCCGACTATTGTCAACTTTCCCATCACGAACGTCGATCTGCGCGAGTACCTGACCGAAGAGGCGCAGGCTACAGAGAAGATCACCACCTACGACCTGGTGGCCAATGTAGTGCACGATGGAAAACCTTCTGAAGGGTCCTACAGGATTCATGTTCTGCATCACGGCACAGGGAAGTGGTACGAGCTTCAGGATCTGCAGGTGATTGATATCCTTCCACAGATGATCACGCTCTCGGAGGCGTACATACAGATTTGGAAGAGACAAGATAAAGACGAGGGAGCAGAAAGCCATACAGGGGCATAGGAGGCCCAAAAACACAGCATTGGTGAGATGTAATTGAAAGGATTCATTTCATTGCTGCACGCCAGGGCTTTAAGGAGGAACAGACTTATGTAGAGTTACAATGAAAGAAGACATTAAACGAAAACCCTGATGTTATATTCATGTAACTGCTGAAGAGTCTGGAAAGTGGACATTGCACATTTATGTGTTCTGctctgaccttttttttaattatttcagtttgattGCGGCTGTTGCTTGGCCTGTGTTGTTTGTAGGATGAAAtcttttaataaagttttcAAGACAATA

Function

symbol description
usp39 Predicted to enable thiol-dependent deubiquitinase and zinc ion binding activity. Acts upstream of or within adenohypophysis morphogenesis; cranial skeletal system development; and regulation of RNA splicing. Predicted to be part of spliceosomal complex. Is expressed in brain; eye; immature eye; and intermediate cell mass of mesoderm. Orthologous to human USP39 (ubiquitin specific peptidase 39).

NR:

description
PREDICTED: U4/U6.U5 tri-snRNP-associated protein 2

GO:

id name namespace
GO:0048855 adenohypophysis morphogenesis biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0043484 regulation of RNA splicing biological_process
GO:0004221 obsolete ubiquitin thiolesterase activity molecular_function
GO:0004843 thiol-dependent ubiquitin-specific protease activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K12847 USP39, SAD1; U4/U6.U5 tri-snRNP-associated protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238696.1 True 1882 mRNA 0.46 13 27288172 27293486

Neighbor

gene id symbol gene type direction distance location
spaw LOC107548501,LOC107662086,LOC107740019 coding downstream 7781 27277047 ~ 27280391 (-)
LOC122344788 LOC107548517,LOC107662059 coding downstream 115278 27168265 ~ 27172894 (-)
LOC122345424 klhl34,LOC107586735,LOC107671349,LOC107705277,LOC107721877,LOC107663667,LOC107590345 coding downstream 188453 27095380 ~ 27099719 (-)
LOC122345427 LOC107721568,LOC107697698,LOC107711701,LOC107654838,LOC108438743 coding downstream 273674 27001647 ~ 27014498 (-)
LOC122345425 rps6ka4,LOC107758164,LOC107698546,LOC107567284,LOC107702937,LOC108427766 coding downstream 286912 26997549 ~ 27001260 (-)
mat2ab mat2ab,LOC107548521,LOC107662054,LOC107739995,LOC107556049,LOC107722750,LOC107702964,LOC106580346 coding upstream 8773 27302259 ~ 27308208 (-)
inpp5jb LOC107739994,LOC107548522,LOC107702965,LOC107662051,LOC107556011,LOC106585266 coding upstream 19403 27312889 ~ 27334798 (-)
smtnb smtn,LOC107739992,LOC107662053,LOC107702966 coding upstream 50004 27343490 ~ 27389998 (-)
LOC122345946 LOC107740017,LOC107662084,LOC107702896,LOC107548503 coding upstream 97908 27391394 ~ 27393627 (-)
tut7 zcchc6,LOC107740015,LOC107662083,LOC107702897,LOC107728196,LOC107556044,LOC107556045 coding upstream 105927 27399413 ~ 27414999 (-)
G39893 NA non-coding downstream 1978 27285182 ~ 27286194 (-)
G39888 NA non-coding downstream 20943 27265289 ~ 27267229 (-)
G39872 NA non-coding downstream 54010 27232658 ~ 27234162 (-)
G39870 NA non-coding downstream 62610 27224887 ~ 27225562 (-)
G39857 NA non-coding downstream 98950 27188850 ~ 27189222 (-)
G39935 NA non-coding upstream 245002 27538488 ~ 27538861 (-)
G39936 NA non-coding upstream 245454 27538940 ~ 27539327 (-)
G39951 rgs3a,LOC107702900,LOC107728018,LOC107556028,LOC107558862,LOC107693410 non-coding upstream 356964 27650450 ~ 27650827 (-)
G39964 NA non-coding upstream 454974 27748460 ~ 27789829 (-)
G40021 NA non-coding upstream 602157 27895643 ~ 27895961 (-)
LOC122345426 smpx,LOC107705278,LOC107671350,LOC107590224,LOC107663668,LOC107586736,LOC107721880 other downstream 180787 27099815 ~ 27107385 (-)
LOC122344921 NA other downstream 1719486 25561974 ~ 25568686 (-)
G39413 LOC102215562 other downstream 2005886 25281886 ~ 25282286 (-)
LOC122345923 NA other downstream 2529504 24754202 ~ 24758668 (-)
naa38 naa38 other downstream 2539562 24746672 ~ 24748610 (-)
isca1 isca1,LOC107702919,LOC107662049 other upstream 89435 27382921 ~ 27398741 (-)
LOC122344874 NA other upstream 592555 27886041 ~ 27895454 (-)
G40080 pappaa,pappa,LOC107556005,LOC107558864,LOC107739977,LOC107675511,LOC107728218 other upstream 962342 28255828 ~ 28264704 (-)
LOC122345120 LOC107728794,LOC107696375,LOC107590009,LOC107739482 other upstream 2030496 29323982 ~ 29326115 (-)
G40182 brinp1,LOC107715673,LOC107674904 other upstream 2167099 29460585 ~ 29490204 (-)

Expression


Co-expression Network