mat2ab (mat2ab,LOC107548521,LOC107662054,LOC107739995,LOC107556049,LOC107722750,LOC107702964,LOC106580346)


Basic Information

Item Value
gene id mat2ab
gene name mat2ab,LOC107548521,LOC107662054,LOC107739995,LOC107556049,LOC107722750,LOC107702964,LOC106580346
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 27302259 ~ 27308208 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238697.1
AGGGGTGACACTTTTCCTGCGTTTTCTGAACGGGTGTGCTGAAGTACCGCAAAAGAGAAACTAAACATGATGAACGGAGAGATTAACGGCTACCACAATTCTCTTATCGAGGAGGACTGCTTCTTGTTCACATCGGAGTCCGTTGGAGAGGGGCATCCAGATAAGATATGTGACCAGATAAGTGATGCCGTGTTGGACGCTCACCTGAAGCAAGACCCGGATGCAAAAGTGGCTTGCGaaaCCGTAGCCAAGACTGGAATGATTTTGCTGGCGGGAGAGGTGACATCTCGCGCTGTCGTTGATTATCAAAAGGTGGTCCGTGACACCATTAAACACATTGGCTATGACGACTCGTCCAAGGGCTTTGATTATAAGACCTGTAATGTCCTGGTGGCTCTGGAGCAGCAGTCTCCAGACATCGCCCAGGGTGTTCATTTGGACCGCGATGCAGAGGATGTCGGGGCCGGCGACCAGGGTCTGATGTTTGGTTATGCCACCGACGAGACCGAGGAGTGCATGCCGCTCACTATCGTGCTAGCACACAAACTCAACGCCAAGATGGCTGAGCTGCGGCGTAATGGCACCCTGCCCTGGCTCCGGCCAGACTCCAAGACTCAGGTTACTGTGCAGTACAGACAGGAGCGCGGCGCCATGCTGCCGGTGCGCGTCCACACCATTGTCATCTCCGTGCAGCACGATGAAGACATCTGCCTTGATGAGATGCGCGACGCTCTTAAAgataaaatcattaaatctgTGGTGCCTTCTGTTTATCTGGACGACGATACCATTTATCACTTGCAGCCCAGTGGTCGCTTTGTCATTGGAGGCCCTCAGGGTGATGCCGGCCTGACTGGTCGTAAGATTATTGTGGATACCTATGGAGGCTGGGGAGCCCATGGAGGAGGAGCTTTCTCTGGAAAGGACTACACCAAGGTGGACCGCTCTGCGGCGTACGCTGCCCGCTGGGTGGCCAAATCTCTCGTGAAGGCTAAACTGTGCAAGCGTGTTCTTGTGCAGGTTTCTTATGCCATCGGAGTGGCCCATCCTCTTTCCATTTCCATCTTCCACTACGGCACATCCCAGAAGAGTGAGCAGGAGCTGCTTAAAATTGTCAAGAAAAACTTCGACCTTCGTCCAGGAGTCATTGTGAGGGAGCTGGAGCTGAAGAAGCCAATATATCAGAAGACTGCTGCTTATGGCCACTTTGGCCGTGAATCTTTCCCATGGGAAGTGCCCAAAAAGCTGCACTACTAAACCATTTGTCAAGATTTTTCCTCTTTAGGCCTGTTGGCGTATTCTACAGAGAAGCCCACATGGCTTACAGGGAAAAGTCTGGTTATTCTGGTACAAATCCTGCTGGTCCATctttatttaaaccttttttttttttttttttttcctttcattttacCATCATGTTGCATCACGATATTTTATTCTTAGTCGTTTTAAATTTCAAAGATGATTGTTTAATCAGCTTTAGGATAAAGGATGTATACTACACAGATTAacacattaatttaaattttagtagTTGTAAGCTGGTTGGCCAGtattaatgacaaattaaattttaccAAGCCCTTTACCACTGTATCATAAGCATTCCCAAATGTTTTAaacttgtgtatttatttgtgttgtcCTCTGTGCACGTATATTGAAATCTGTAATCTGGAGGTCAACTCTTACGCTACATGTTCTCTCTAGCACTCTGTGGTTCCCAAGTGTCATACAGAAAAACTTTGGGGACCCGGCCATAAGAAAAGTGGCTGCTGCAGTGCCATTTATTTTGGCcaatattatgcattattagaTGCTTTTTGTCTTTCGTCTTTCACAGTCTTTCCTTAAAGAGAGGGGTAGCAATTTTGGCTGGTGTTGTACAGAGAAACTAGCCCGGTTTacatgctttctctctctctctgtctctctctctcttccttcagttttaatttatttttaacaataaaatgttttctattatg

Function

symbol description
mat2ab Predicted to enable methionine adenosyltransferase activity. Predicted to be involved in S-adenosylmethionine biosynthetic process. Predicted to act upstream of or within one-carbon metabolic process. Predicted to be part of methionine adenosyltransferase complex. Predicted to be active in cytosol. Is expressed in anterior neural tube; optic cup; and somite. Orthologous to human MAT2A (methionine adenosyltransferase 2A).

NR:

description
PREDICTED: S-adenosylmethionine synthase isoform type-2

GO:

id name namespace
GO:0006730 one-carbon metabolic process biological_process
GO:0006556 S-adenosylmethionine biosynthetic process biological_process
GO:0004478 methionine adenosyltransferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K00789 metK; S-adenosylmethionine synthetase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238697.1 True 1991 mRNA 0.46 9 27302259 27308208

Neighbor

gene id symbol gene type direction distance location
usp39 usp39,LOC107662055,LOC107739996,LOC107702962,LOC107722749 coding downstream 8773 27288172 ~ 27293486 (-)
spaw LOC107548501,LOC107662086,LOC107740019 coding downstream 21868 27277047 ~ 27280391 (-)
LOC122344788 LOC107548517,LOC107662059 coding downstream 129365 27168265 ~ 27172894 (-)
LOC122345424 klhl34,LOC107586735,LOC107671349,LOC107705277,LOC107721877,LOC107663667,LOC107590345 coding downstream 202540 27095380 ~ 27099719 (-)
LOC122345427 LOC107721568,LOC107697698,LOC107711701,LOC107654838,LOC108438743 coding downstream 287761 27001647 ~ 27014498 (-)
inpp5jb LOC107739994,LOC107548522,LOC107702965,LOC107662051,LOC107556011,LOC106585266 coding upstream 4681 27312889 ~ 27334798 (-)
smtnb smtn,LOC107739992,LOC107662053,LOC107702966 coding upstream 35282 27343490 ~ 27389998 (-)
LOC122345946 LOC107740017,LOC107662084,LOC107702896,LOC107548503 coding upstream 83186 27391394 ~ 27393627 (-)
tut7 zcchc6,LOC107740015,LOC107662083,LOC107702897,LOC107728196,LOC107556044,LOC107556045 coding upstream 91205 27399413 ~ 27414999 (-)
psat1 psat1,LOC107548526,LOC107556046 coding upstream 107100 27415308 ~ 27421004 (-)
G39893 NA non-coding downstream 16065 27285182 ~ 27286194 (-)
G39888 NA non-coding downstream 35030 27265289 ~ 27267229 (-)
G39872 NA non-coding downstream 68097 27232658 ~ 27234162 (-)
G39870 NA non-coding downstream 76697 27224887 ~ 27225562 (-)
G39857 NA non-coding downstream 113037 27188850 ~ 27189222 (-)
G39935 NA non-coding upstream 230280 27538488 ~ 27538861 (-)
G39936 NA non-coding upstream 230732 27538940 ~ 27539327 (-)
G39951 rgs3a,LOC107702900,LOC107728018,LOC107556028,LOC107558862,LOC107693410 non-coding upstream 342242 27650450 ~ 27650827 (-)
G39964 NA non-coding upstream 440252 27748460 ~ 27789829 (-)
G40021 NA non-coding upstream 587435 27895643 ~ 27895961 (-)
LOC122345426 smpx,LOC107705278,LOC107671350,LOC107590224,LOC107663668,LOC107586736,LOC107721880 other downstream 194874 27099815 ~ 27107385 (-)
LOC122344921 NA other downstream 1733573 25561974 ~ 25568686 (-)
G39413 LOC102215562 other downstream 2019973 25281886 ~ 25282286 (-)
LOC122345923 NA other downstream 2543591 24754202 ~ 24758668 (-)
naa38 naa38 other downstream 2553649 24746672 ~ 24748610 (-)
isca1 isca1,LOC107702919,LOC107662049 other upstream 74713 27382921 ~ 27398741 (-)
LOC122344874 NA other upstream 577833 27886041 ~ 27895454 (-)
G40080 pappaa,pappa,LOC107556005,LOC107558864,LOC107739977,LOC107675511,LOC107728218 other upstream 947620 28255828 ~ 28264704 (-)
LOC122345120 LOC107728794,LOC107696375,LOC107590009,LOC107739482 other upstream 2015774 29323982 ~ 29326115 (-)
G40182 brinp1,LOC107715673,LOC107674904 other upstream 2152377 29460585 ~ 29490204 (-)

Expression


Co-expression Network