spaw (LOC107548501,LOC107662086,LOC107740019)


Basic Information

Item Value
gene id spaw
gene name LOC107548501,LOC107662086,LOC107740019
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 27277047 ~ 27280391 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238698.1
ATCATAGGCAATTTTGAATCAACAAGATCGTCTAACTTTGGGTGGCCCAAAATCAAAGGATGTCGCTGGCACGTTAGAGCACGAGAGTGTCACGCCTCGCGCAAATAAATGCCTGCACAGTTTCGAGAAGCAGTGAACTTGACAGCTCTGCTCTCCTCTGATGTGCTTCACGGATCAGAGGGATTCCGCGGAGACCACAGGATGGCAGGGGTCATCGGGGGCCAGCTGCGCACTTTAAAAGCGCCGTCCACAGCCCGGACCTCAGACGAGCCGAGAGGAGGAATCGGACGCTACAGATCGGTACCAGATCGAAAACTTTATTGATTCGCGATGGAAACCCTGCCAATCGTATTGCTCGCCGTCTTGACGGTTTCCTTGATGCGCGCTGGCTGCGTGAAGATCGATAATCGCGGCGCACTCGCGGGAGAACGCCGTAAAGTCTTCGCAGGTTCACATCCCGACTTCAGTCTCCAGTCGTATCCAAGGTACCCTCTCTACATGATGCAGTTATACAGAGACCTGGCAACTACTCCAGCCGGTGTAGACAACCCAACTCTTCACCAGTCTGACTTCGTCCTGAGCCTGGTCGCACAAGACTGTCATCAAGTCGGTGAGCGGTGGTCCGTCACTTTCGACATGTCCTCCCTCTCGGCGCGTGACAGCGTTCAGCTCTCGGAGCTCCGCGTCCGTCTTCCGGCGTTTTCCGCGTCCGGGCGCGTTACTGTGGACGTCTTCCACTTACGTAAACAGGGCTGCTCTGACTCTGCGACtgatttttgtcaaaataagcGACTTCTTATAGGCAGCATCAAGTCGGCTCCCGACACTTCAGCGTCGCCCTGGAGAGTTTTCAATGTCACGGAGTTATTAGAGCGCTGGTTGAATCAAAGAGCCGAAGAGATCCTGACGACTGATGCCGGAGAGGACGCCGGAAGCGGGGAAGGCTTACCTGGACCCGCTGCAGATAGCTGGCGAAGAAAAATCCAGCATCCCACAGCGGAACGGGTCGTGATTGTAGTtttctacaaaaacaaaccttcCCACAGCGGCCAAGCCTCCAGCTTGATCGATACAGCGACGCGCTCCAAACACGTCGTCCTGAACCGGGCGCCGGACGCGGCGCAGGCTCGCCGCCACAAGAGGAACCGCGTCGAACGGATGCGCGCCGCGGATGACGGGAACGCGACGCGAGCAGTGACGCCTCTAGAGCCGCGTTGCCGTCGAGTCGATATGTGGGTGGATTTCGATCAGATTGGATGGGATGAATGGATCGTGCACCCTAAGCGTTATAATGCGTACCGCTGCGAAGGAGAGTGCCCGAGTCCGCTGGACGAGTCTTACAACCCAACAAACCACGCGTATATGCAGAGTTTGCTGAAGCTGTACCACCCGGAGCGCGTTACCTGTCCGTCGTGTGTCCCCACGCGCCTCAGCTCGCTCTCCATGCTGTACTACGAAGGAGACGGCGTGGTCATGCGCCACCACGAGGACATGATCGTGGAGGAGTGCGGCTGCCAGTGAGAGCTTTTAGTGTTTCAGCGGGCGACTCTGATAAGCCTTCAAAGGTTTAATAACATTCCATGCCATTATTCTGAACTAAAGAACGTATTTTTGGACAGTCTTTCCAATGAGAACCGCTGAAATGCTGCGCAAAacgatatttaatatttaaaagacattttaaggagtgtttatttttatgtacatagGGTATGCATAGATTTCATTTAAGGAAATGTATATGTATTGCgataaaatgtgatgtttttttttttttctttttatcagcAGGCTTgataagtttttatatatataaaaaaagtaaaataactaataaagcaaaacattttttatttggttgACTTTGTACTTTGTAGGCGtcagcattttttatatattactacattattattatttgtatatcgttttgcttattgtttttcaaatctaaaatgttttaaaatgtaaaaggaagttgttaaattattaaagaatttgc

Function

NR:

description
PREDICTED: nodal homolog

GO:

id name namespace
GO:0003140 determination of left/right asymmetry in lateral mesoderm biological_process
GO:2000223 regulation of BMP signaling pathway involved in heart jogging biological_process
GO:0060971 embryonic heart tube left/right pattern formation biological_process
GO:0001947 heart looping biological_process
GO:0035462 determination of left/right asymmetry in diencephalon biological_process
GO:0035469 determination of pancreatic left/right asymmetry biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238698.1 True 1999 mRNA 0.50 3 27277047 27280391

Neighbor

gene id symbol gene type direction distance location
LOC122344788 LOC107548517,LOC107662059 coding downstream 104153 27168265 ~ 27172894 (-)
LOC122345424 klhl34,LOC107586735,LOC107671349,LOC107705277,LOC107721877,LOC107663667,LOC107590345 coding downstream 177328 27095380 ~ 27099719 (-)
LOC122345427 LOC107721568,LOC107697698,LOC107711701,LOC107654838,LOC108438743 coding downstream 262549 27001647 ~ 27014498 (-)
LOC122345425 rps6ka4,LOC107758164,LOC107698546,LOC107567284,LOC107702937,LOC108427766 coding downstream 275787 26997549 ~ 27001260 (-)
unga ung,unga,LOC107712535,LOC107687060,LOC107560323,LOC107752258,LOC107702903 coding downstream 375373 26897463 ~ 26901674 (-)
usp39 usp39,LOC107662055,LOC107739996,LOC107702962,LOC107722749 coding upstream 7781 27288172 ~ 27293486 (-)
mat2ab mat2ab,LOC107548521,LOC107662054,LOC107739995,LOC107556049,LOC107722750,LOC107702964,LOC106580346 coding upstream 21868 27302259 ~ 27308208 (-)
inpp5jb LOC107739994,LOC107548522,LOC107702965,LOC107662051,LOC107556011,LOC106585266 coding upstream 32498 27312889 ~ 27334798 (-)
smtnb smtn,LOC107739992,LOC107662053,LOC107702966 coding upstream 63099 27343490 ~ 27389998 (-)
LOC122345946 LOC107740017,LOC107662084,LOC107702896,LOC107548503 coding upstream 111003 27391394 ~ 27393627 (-)
G39888 NA non-coding downstream 9818 27265289 ~ 27267229 (-)
G39872 NA non-coding downstream 42885 27232658 ~ 27234162 (-)
G39870 NA non-coding downstream 51485 27224887 ~ 27225562 (-)
G39857 NA non-coding downstream 87825 27188850 ~ 27189222 (-)
LOC122344810 LOC107662059,LOC107548517 non-coding downstream 130085 27115967 ~ 27146962 (-)
G39893 NA non-coding upstream 4791 27285182 ~ 27286194 (-)
G39935 NA non-coding upstream 258097 27538488 ~ 27538861 (-)
G39936 NA non-coding upstream 258549 27538940 ~ 27539327 (-)
G39951 rgs3a,LOC107702900,LOC107728018,LOC107556028,LOC107558862,LOC107693410 non-coding upstream 370059 27650450 ~ 27650827 (-)
G39964 NA non-coding upstream 468069 27748460 ~ 27789829 (-)
LOC122345426 smpx,LOC107705278,LOC107671350,LOC107590224,LOC107663668,LOC107586736,LOC107721880 other downstream 169662 27099815 ~ 27107385 (-)
LOC122344921 NA other downstream 1708361 25561974 ~ 25568686 (-)
G39413 LOC102215562 other downstream 1994761 25281886 ~ 25282286 (-)
LOC122345923 NA other downstream 2518379 24754202 ~ 24758668 (-)
naa38 naa38 other downstream 2528437 24746672 ~ 24748610 (-)
isca1 isca1,LOC107702919,LOC107662049 other upstream 102530 27382921 ~ 27398741 (-)
LOC122344874 NA other upstream 605650 27886041 ~ 27895454 (-)
G40080 pappaa,pappa,LOC107556005,LOC107558864,LOC107739977,LOC107675511,LOC107728218 other upstream 975437 28255828 ~ 28264704 (-)
LOC122345120 LOC107728794,LOC107696375,LOC107590009,LOC107739482 other upstream 2043591 29323982 ~ 29326115 (-)
G40182 brinp1,LOC107715673,LOC107674904 other upstream 2180194 29460585 ~ 29490204 (-)

Expression


Co-expression Network