si:ch211-225b11.1 (si:ch211-225b11.1,LOC107743342,LOC107597273,LOC107654634,LOC107595947,LOC107696069,LOC107741213)


Basic Information

Item Value
gene id si:ch211-225b11.1
gene name si:ch211-225b11.1,LOC107743342,LOC107597273,LOC107654634,LOC107595947,LOC107696069,LOC107741213
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 12564192 ~ 12579711 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238703.1
TACAATACTGTAAGTGCATTTACTCGATACACGAAAGAAGATGGCGTTACGTGTAACTTAAACCTCTGACTAgctgaaatggttttaaattaCGTAGCCTAGACTACTGGTCTacaatatagtaaatataaatcTTAAGGTCCAGCAGTCCCGTTTAATATCACGATTCACCATCGTCATCGGTATATAATGTTTCGAGTCGGTAATACAGGTGACATTAATTCTATATGGAGCCACTAACCTCTCTACACGTGCATGCACGATATTTGACTCGATTTTAAATTCGCACGTGAGCATTGCATTGCCTACAGACAGCGGCGCGCGTTCACAGCCCACTGACGTCGCTGAAGGGGCGGGGCCGGTGTCGTGACAACCCAGAGCCATAACGTTGGAAAGTGTAGTTTAGGGGGCAGGtcttaaaaattataaaactgaGCTATATAAGCTTCTACAGTTTGTTCCTGTTATGTGTTTGGAACAGTTAAAGACAACGCCGTCTCTCGTTTTTGTATGAGGCTTAGGTTTGATAATATATTCGGCATATTCATCTCTTTTAATACAGCCGTACACCGTAGTGCTAGGGACGTTTGGTAATGCATACCGGTAAACTGCAGCAGTCTCAAGCGGATTCGTTTAAATTAAAAGCCCTTATTAAAACTACATTACATATAGttgtattgcatttttgtatttataaaattgtaaattaatgtatgtattttattcgATTATAGCGCTCTTTTACTGCTGAGACATTCGCTTTATTCGGCTGTAAACGTTTGTAATTATGGGAGTAGGAGCTGAAACCGAAAACGCGTCCAGTAAGTTTTCATTGCAGCAGCTTGACGAAAAAGAGGAGGTAGAGCTCGACAATGATGGAGCCGTGAGGATGGTAAAGGACGATCTCCAGTCAACTGAGCCGAGAGAAACGTGGGGTCGGCGCCTCGAGTTCGTGCTCGCTTCCGTCGGTTACGCTGTGGGTCTGGGAAACGTGTGGCGCTTTCCGTACTTGTGCTACAGGAGCGGAGGAGGTGCTTTCTTGATTCCCTACTTGATCATGTTGTTTCTCTGTGGTATCCCACTGCTGTTCATGGAGTTCACCGTTGGGCAGTACACCCGTCTGGGGCCAGTCCATTCTCTGGCTAAAATATGTCCCCTTTTCAAAGGTGTGGGGCTTGCCACAGTGGTGATTTCATATGTGCTCTGCACCTACTACAATGTGCTCATGACCTGGGCTCTCTACTACCTGCTTCACTCGTTCAGCCCCTCGTTGCCTTGGCAGTCCTGCAACAACACATGGAATGCAGTTGGCAACTGTTCCACTGGATTTCCTGGCAATGCCACACATCTGCAATCAGCCAGTCAACAGTTCTTTGACCATAAGGTTTTAGAAATGACCACTGGGATTGAGCATGCTGGAGGCATTCGTTGGGAACTCTTTGGCCTTCTAGTCCTGGCCTGGGCCATTGTTTATTTCTGTATCTTTAAAGGAGTCAAATCCACTGGAAAGGTTGTGTACTTTACTGCCACGTTCCCTTATTTCATACTGTTTGCATTGCTGATCAATAATGTCCAGTTGCCTGGAGCAAAAGATGGTATTCTCTTTTTCCTCATGCCAAATTGGAGTAAACTCTTGGAAGTCCAGGTGTGGGTCAATGCTGCTGCCCAGATTTTTAACTCCATTGGTATCTCCTTCGGTTCTATGATATCTATGGCCAGTTACAACAAGTTCAACAACAACATCCTCAGGGACACATTTATCGTCTCTCTGGCTAATTCAGCCACAAGTATCGTGGCCgggtttgttattttttctgcCATCGGGTACATGGCCCACATTCACAACCTACCAGTAGATGACATTGCCACAGATGGGCCTGGTCTGGTGTTTGTGGTGTATCCTGAAGTCTTCTCCACTATGCCAGTCTCTCAGCTCTGGGCTCCTCTGTTTTTCATCATGTTACTCTGCCTCGGATTGGACAGTCAGTTTGCCATGGTGGAAGTGGCTGTAACTTTCATCATGGATGGATTTGGCAAGAAAGTTCTGAAAGTTTTTAAGAGGAAGGAGCTGATTGTTCTGGCAGTGTGCAGCTTTGGTTTTCTGCTGGGGATTCCTCACATTACTAGGggtgGGATATATGTGTTTCAGCTGATGGATCACTACACAGCCGTGGTTTCTCTCATGTTTCTGGCCTTCTTCGAGGTGCTCGCCGTCACAGTCATATTTGgagTGAGACGGCTCAGTGTAATGGTGGAGAATATGCTGGGGAAGAAACCGAACCTCTTCTTCCGTGTCTGCTGGCAGTTCCTGTCACCCATGCTTGTGCTGGGTATTCTGATCTCTAGTATTGTTCAGTACACTCCGGCTCGATACGGTAAGTCCTACACATACCCGCTGTGGGCCGAGGTGGTGGGCTGGTTCATCTCTCTCGTCTCCATCATCTGGATTCCGCTGGGGGCTCTGCATGAGCTTTGGACCACGGAAGGGTCTCCGCTGCAGAGGTTGAAGAAGTCCGTATCTCCAACCATAGATCTGGAGAAACCATCCGGCGAATCCATTGCGCTGTTTACTGCTGCTTAGACACCTGTATGTGAGATCTTGGTATGTTTACTCATTAGAAGTACAAAGTAGCTTTgcttaaactgtaaaaaattatcattctatgtttttatattttgttggtTTATTTGAGTAATGCTGAAAAGTACAAACATCAAGGAGGACCCAGAATAACAATATGGCATTAATAttgaagatttttgttttttagtttactcattgaagtgttttattacatgtatttgtttgattatttaacagttttgtaatgattttattcatattttctttgTGGAGAGAGAAATTGCAAGATTTTGGTTGGTTTtctctgttatttaaaattttaataattaagcattgatcttgaactttatattttcatactCTGATCTGAAGCACTGATGAAaccttaaaatgtattagaaTTTCAGAGACAACATACTTCATTTCAGAATTCAAACATTAATGCTGCTGCACTCACAAATGCCTGTACAAAATGTCAATGCAACTCTTCCACAAAGCTTTTAAACGTCAGCATCAATTTGTTATGGCTACAACAACATTCACTCACATAGACTAGTGCATTCAGATTCTATAcacaacagaaaaagaaaaaaatacaaagagcTGGTTTTAGATTCCTTCATGTTCACAGAGGAGCAAGGTTACGTGAGTGGAAATCCACAAATCCACCTGCTTATGACTCATGCGAGTTTTCCCatctattttgtaaatgttaactGTCGCTGAAGTTTACGGGGGCGAAATGAGGACCAGGATAaaggtaaaaagtaaaaaaaaaatgtgtgtccTTATTTGTAAGCACTTTCTGAAATCACCTTTAAGGCCTATGCTTTGATAGAGATTGTACTAAAATTCATGAttaccatttttaatattttattactctGTTTAGTataaaaagatgattttaaaaaaagcttttatatcaaaatgcatatttataaaaaatagttttaaatgcacaatattgCAAACAATTACTGATAAATCATAAATAGTAGTATCCACTGAAGCAGTgataattatattgtataaatatttatatttgtaccgttattttttaacatgcatatcATTGTCAtactttgtctttttattgtgtCAGAATGAatacttgttttttattttaatgacactACAGAAGGATAATTGTGCAAACAGTTGTTCTCATTTGTCATTATAGTGTATGGAgatcaaatgttttatatattcaaattgtCTTTATGTCATGACTGACCGTTTTAAATGCAAGTGGCTTACCAAAATAAAAGGCTTTGTGTTTGTCACTTTCA

Function

symbol description
si:ch211-225b11.1 Predicted to enable symporter activity. Predicted to be involved in sodium ion transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane.

NR:

description
PREDICTED: sodium- and chloride-dependent GABA transporter ine-like

GO: NA

KEGG:

id description
K05039 SLC6A6, TAUT; solute carrier family 6 (neurotransmitter transporter, taurine) member 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238703.1 True 3876 mRNA 0.41 13 12564192 12579711

Neighbor

gene id symbol gene type direction distance location
pik3ip1 pik3ip1,LOC107576614,LOC107654636,LOC107741209,LOC107696071,LOC107595949,LOC107743346 coding upstream 24372 12532379 ~ 12539820 (+)
camk2b1 camk2b1,camk2b,LOC107696072,LOC107741206,LOC108255499,LOC108444312,LOC102293296,LOC100695100,LOC103134902,LOC107386224,LOC107103247,LOC108242787 coding upstream 54184 12457911 ~ 12510008 (+)
si:dkey-13n15.2 si:dkey-13n15.2,LOC107743336,LOC107595973,LOC107654639,LOC107575942 coding upstream 107139 12434336 ~ 12457053 (+)
LOC122345277 sh2d1aa,LOC107713049,LOC107741293,LOC107663232,LOC107557102 coding upstream 264011 12296255 ~ 12300181 (+)
LOC122345271 LOC107672980,LOC107743347,LOC107597351,LOC107741294,LOC107663230,LOC107557104 coding upstream 292928 12265270 ~ 12271264 (+)
wscd2 wscd2,LOC107597274,LOC107743343,LOC107741214,LOC107696066 coding downstream 15566 12595277 ~ 12639274 (+)
ficd ficd,LOC107741218,LOC107711781,LOC107597275 coding downstream 100970 12680681 ~ 12683727 (+)
dao.3 LOC107727161,LOC107654625,LOC107597279,LOC107741224 coding downstream 214508 12794219 ~ 12797438 (+)
LOC122346075 LOC107654625,LOC107597279,LOC107741224,LOC107727161,LOC107696048 coding downstream 218413 12798124 ~ 12802870 (+)
usp30 usp30,LOC107727160,LOC107741225,LOC107597278,LOC107696057,LOC100537262 coding downstream 240894 12820605 ~ 12826178 (+)
G35855 NA non-coding upstream 13012 12548666 ~ 12551180 (+)
G35834 NA non-coding upstream 20104 12536738 ~ 12544088 (+)
G35756 LOC107557121,LOC107597264,LOC107672815,LOC107663216,LOC107557098 non-coding upstream 205394 12356438 ~ 12358798 (+)
LOC122345282 LOC107597264,LOC107672815 non-coding upstream 276814 12278130 ~ 12287378 (+)
LOC122345281 NA non-coding upstream 279070 12284445 ~ 12285122 (+)
G35864 NA non-coding downstream 60556 12640267 ~ 12641645 (+)
LOC122345920 NA non-coding downstream 65573 12645284 ~ 12647088 (+)
G35847 NA non-coding downstream 188237 12767948 ~ 12768550 (+)
G35903 NA non-coding downstream 302549 12882260 ~ 12882512 (+)
G35904 NA non-coding downstream 305294 12885005 ~ 12885284 (+)
si:ch211-225b11.4 si:ch211-225b11.4,LOC107743340,LOC107597327,LOC107654601,LOC107580265,LOC107735986 other upstream 35402 12514013 ~ 12528790 (+)
G35720 LOC107654642,LOC107597266,LOC107743332,LOC107741203,LOC107557123,LOC107663229 other upstream 308520 12249138 ~ 12255672 (+)
smarca1 smarca1,LOC107597262,LOC107672796,LOC107741199,LOC107663213,LOC103034185,LOC105028962,LOC105893234,LOC106603320 other upstream 621082 11924228 ~ 11943110 (+)
glra4b glra4b,LOC107741187,LOC107565418,LOC107680382,LOC108442052,LOC108259905 other upstream 911509 11638516 ~ 11652683 (+)
gria3a gria3a,LOC107597231,LOC107672342,LOC107732609,LOC107680378,LOC107733225,LOC107592272 other upstream 1260761 11266642 ~ 11303431 (+)
iscu si:ch211-191d15.2,iscu,LOC107597282,LOC104937683 other downstream 123641 12703352 ~ 12705245 (+)
LOC122346073 LOC107654625,LOC107597279,LOC107741224,LOC107696048,LOC107727161 other downstream 224078 12803789 ~ 12807351 (+)
ins ins,LOC107596207 other downstream 1404386 13984097 ~ 13985706 (+)
G36495 NA other downstream 1710709 14290420 ~ 14292500 (+)
LOC122345142 NA other downstream 1720332 14300043 ~ 14305304 (+)

Expression


Co-expression Network