rasgef1ba (rasgef1ba,rasgef1b,LOC107599189,LOC107663389,LOC107744864,LOC107746854)


Basic Information

Item Value
gene id rasgef1ba
gene name rasgef1ba,rasgef1b,LOC107599189,LOC107663389,LOC107744864,LOC107746854
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 14718524 ~ 14778259 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238706.1
CTCTTGACTAGACAAAGACGATGAGCTGTCACACCTTTCACACGAATCCTATCCGTTCGGAGTCAAAGAAATGCTGAAAGGAAAGTCCAAGGAGCGAAAAATCGGTCTGCTGTGCTGTAGGAAACCGCTGCCGGAACAAGACTACCTGTGGGCACTGTAGTGAGGGTAAGAAACAGCCTGGCAGCCAGCGGCGTTTTCAATCTACCGGCGAAACACACCACGCACATTTATATGGCAAAGTTCCTCGCAGAGCTTCTGGGATGTACGCTGCCCGAGAAAGGAGCATCTCCGATGTTCGAGTGCAGGAGTCAGCCGCACATCGGACTGAGGCATGTCACCAAACAACGGCCCACCATATTTGGGACACTGATTGAAAAACCGCTGGGGGATCACAATGCAGACAAAATGCCTCAAACACCACCCTTTCCAGCTATGTACGGGTCCAATGGCTACAACAAGAATCTCTATAAGGCCAAGGAAGAGGACTACGAAGGCCTGTATTACCATGAAAACAACCTGGTATCAGGGTCCTTGGAGGCTCTAATTGAGCACTTGGTCCCTACGGTTGCTTACTATCCTGATAGGACATACATCTTCACATTCCTGCTCAGTTCCCGTCTCTTTATTCACCCATATGAGCTGATGTCCAAAGTGTGCCATTTGTGTGTGGACCAGCAGAGACTCGCTGATGCTCAGGCCGATAAGGCAAGAGTCAGGAAAATTGCTCCCAAGATCCTACAGTTGCTGACTGAGTGGACGGAGACATTTCCCTATGACTTCAGGGATGAGAGGATGATGAAGAGCCTGAAGGAACTAACACATCGTCTCAGTACTGGGGATGAACTCTATCGCAAGGCGGTGCAGCAGATGACCCAAACACTGATCCGTAAGCTCACCACACTGAGTCAGTACGAGGAGGCTTTGGCCAAGATTAACTCCTCTGTGACTGACAGACTAACTGTGCTGAAGACCAAACCTCAGTCCATCCAGAGAGACATTCTGACCATCTGCAGCGACCCTTTCACCCTGGCACAACAACTCACACACATTGAACTGGAAAGACTGAGCTACATCGGACCAGAGGAGTTTGTTCAGGCATTTGTTCAGAAAGACCCTCTTGATAACGACAAGAGATGCTTTAGTGATCACAAAAAAGCAAGTAACCTGGAGGCTTATGTGGAGTGGTTCAACAGGCTCAGCTACCTGGTGGCGACGGAGATCTGCATGCCTGTAAAGAAGAAACATCGGGCTCGAGTCATCGAGTTCTTCATCGACGTGGCACGAGAATGCTTCAACATTGGCAACTTCAACTCGCTCATGGCCATCATTACTGGGATGAACATGAGTCCGGTGTCACGGCTCAAGAAGACCTGGGGCAAAGTAAAAACTGCCAAATTTGATATACTAGAGCACCAGATGGATCCCTCTAGCAATTTCTACAACTACAGAACAGCGCTGCGTGGAGCCACTCAGAGATCCATCACTGCTCATAGCAGCAGAGAGAAGATTGTTATCCCTTTCTTCAGCCTCTTGATTAAAGACATTTACTTCCTCAATGAAGGATGTGCCAACAGGCTCCCAAACGGACACGTCAATTTTGAGAAATTCTGGGAGCTGGCCAAACAAGTGATGGAGTTCATGACATGGAAGAAGGTGGAGTGTCCTTTTGACAGAGACCGCAAGATTCTGCAGTATCTCCTGACCGCACCGGTCTTCAGCGAAGATGCTTTGTATCTGGCATCTTATGAGAGTGAAGGACCGGAGAACAACATGGAGAAAGACAGATGGAAATCTCTCAGGACCTCGTTGCTGAACAGGACATAAATCCTGCGAGGAGCTCAAAATCAAGTGAACCTTCTGACAAGCAAGCTGTGTGTCCCCTTTTGCCCCCTCAAAAAGTGAGAAGTATCCCTGTTTTTTCAAGGGAGATGACAATCCATATTTTGCTGAACGGTGCATTTTTATGTTGGAAAGAGCAGCATCTTTATACAAGGcccatctctttctctttttcatacTGGATATTTCAGGCTTTTTCATCTCTTTGTGCAGACTTTTGTACTCCTTTTTCTCCCTCTTTAAAGCATGATTTGAGCAGAAGGAGAATGACATGTCCCTCGTCTACAAACCAATTCCGATCTATGCTGTCGTTCTTCTCTATTGACTGCAAGAGTTTGCTGCTGGTTGGCAAACTTGATTGGTACAGGTTggggaaaaggaaaaaaaaaaaaaaaaaaagcttataaacCAGCATTATGTGTACTGGGTTCcagtactgtgtatttttattgtacctGAAGCATTAATTTAAGTATAGATTTATGTTGTCACTATTTTTTGATATTGTGTTATGCATATGAGATGTGAGTAATGCATTGCTTTAACCTCTGTGAGTGACCATTAACGTGTGCGTGATAAACCCGCTGAGGGTTGCCGAATGCACTGGATGCTTCTGTGAATAAAGATGTCAATTCCTTTCTTGTGCAAACTCTTTTGTGATAATTCTGCAGCATTAAGCTCTCccatcccttttttttttttttttttttttaattgttgtctAGGTTTAGCTGTAGATGTATGTTGACTGTTGATGGAAAGTGTGTCCGTTTGTCAGTGTTACAGTTGTAATGCTGTTTCTTACACAATGAAGGTGGTGTTTTCAGAAGGACAGCTTTCACGGCTGCTGTTGGCCAGGGCACAGGTGAATGGTGTTATGGCGCCCTCTGGTGGTGAAGTGGGAAATATACCGACTTGTACTTATCAGGGAGGAGTCGATTACATGAAGGCCTATCATACCTGTGGAAGTTGGGATTTGAGTCTATTTGTATGatgtattaaatttttattactgttattttaagaatatttgtattattttcctttgattttatttattggcCTTAAAAATATCTGTAGTCGTCCTGTTTTTGTCTgctttgttttcaaatatttgaaagataTTTACAGGCTTTATTATATTCTATGTTATTTTGTACTAGGTACATGTTTTATAGTAATCAGATATCGCTCtatctaatattttataatgtttataaaagttTGTATGaggaaaaaactaatatttgaagGTACTGGCACATGAAATTAATGTcattcagttctttttttttcctgattggAAACTTTCCGCAAATACATaccctttttttctgtgtaaatatCATGTTTTCTCCACTCTGTATATTggtatgtattttaaacattcgTGCAGAATATAGGACCTCATGAATAGTGGTATGGagtgaacaagaaaaaaaagagcaattaaAGAATGCCTATGAAA
>XM_043238707.1
CAGCACACTTGCTTGTGATCGTGAGAGAGAAGGACGTCGCACGTACAGCCTGGATGTATTTTTAAGGATCACGCGCTTGAGTGTCATCCGTATGACCTAGGAATACGCAGCGTGACTTTTCTTAGTTTCACGTTTTTGAGAATCGTTTTTAAGCGTGTTGTTATATGTCCGGAGGTTCATCTTGCGCAGCCATTCATCGCCAAACTTCTGCAGGGCTGATCTACAGCGGAGTCTCAGTCCCTTTGGAGGACAAAATGCCTCAAACACCACCCTTTCCAGCTATGTACGGGTCCAATGGCTACAACAAGAATCTCTATAAGGCCAAGGAAGAGGACTACGAAGGCCTGTATTACCATGAAAACAACCTGGTATCAGGGTCCTTGGAGGCTCTAATTGAGCACTTGGTCCCTACGGTTGCTTACTATCCTGATAGGACATACATCTTCACATTCCTGCTCAGTTCCCGTCTCTTTATTCACCCATATGAGCTGATGTCCAAAGTGTGCCATTTGTGTGTGGACCAGCAGAGACTCGCTGATGCTCAGGCCGATAAGGCAAGAGTCAGGAAAATTGCTCCCAAGATCCTACAGTTGCTGACTGAGTGGACGGAGACATTTCCCTATGACTTCAGGGATGAGAGGATGATGAAGAGCCTGAAGGAACTAACACATCGTCTCAGTACTGGGGATGAACTCTATCGCAAGGCGGTGCAGCAGATGACCCAAACACTGATCCGTAAGCTCACCACACTGAGTCAGTACGAGGAGGCTTTGGCCAAGATTAACTCCTCTGTGACTGACAGACTAACTGTGCTGAAGACCAAACCTCAGTCCATCCAGAGAGACATTCTGACCATCTGCAGCGACCCTTTCACCCTGGCACAACAACTCACACACATTGAACTGGAAAGACTGAGCTACATCGGACCAGAGGAGTTTGTTCAGGCATTTGTTCAGAAAGACCCTCTTGATAACGACAAGAGATGCTTTAGTGATCACAAAAAAGCAAGTAACCTGGAGGCTTATGTGGAGTGGTTCAACAGGCTCAGCTACCTGGTGGCGACGGAGATCTGCATGCCTGTAAAGAAGAAACATCGGGCTCGAGTCATCGAGTTCTTCATCGACGTGGCACGAGAATGCTTCAACATTGGCAACTTCAACTCGCTCATGGCCATCATTACTGGGATGAACATGAGTCCGGTGTCACGGCTCAAGAAGACCTGGGGCAAAGTAAAAACTGCCAAATTTGATATACTAGAGCACCAGATGGATCCCTCTAGCAATTTCTACAACTACAGAACAGCGCTGCGTGGAGCCACTCAGAGATCCATCACTGCTCATAGCAGCAGAGAGAAGATTGTTATCCCTTTCTTCAGCCTCTTGATTAAAGACATTTACTTCCTCAATGAAGGATGTGCCAACAGGCTCCCAAACGGACACGTCAATTTTGAGAAATTCTGGGAGCTGGCCAAACAAGTGATGGAGTTCATGACATGGAAGAAGGTGGAGTGTCCTTTTGACAGAGACCGCAAGATTCTGCAGTATCTCCTGACCGCACCGGTCTTCAGCGAAGATGCTTTGTATCTGGCATCTTATGAGAGTGAAGGACCGGAGAACAACATGGAGAAAGACAGATGGAAATCTCTCAGGACCTCGTTGCTGAACAGGACATAAATCCTGCGAGGAGCTCAAAATCAAGTGAACCTTCTGACAAGCAAGCTGTGTGTCCCCTTTTGCCCCCTCAAAAAGTGAGAAGTATCCCTGTTTTTTCAAGGGAGATGACAATCCATATTTTGCTGAACGGTGCATTTTTATGTTGGAAAGAGCAGCATCTTTATACAAGGcccatctctttctctttttcatacTGGATATTTCAGGCTTTTTCATCTCTTTGTGCAGACTTTTGTACTCCTTTTTCTCCCTCTTTAAAGCATGATTTGAGCAGAAGGAGAATGACATGTCCCTCGTCTACAAACCAATTCCGATCTATGCTGTCGTTCTTCTCTATTGACTGCAAGAGTTTGCTGCTGGTTGGCAAACTTGATTGGTACAGGTTggggaaaaggaaaaaaaaaaaaaaaaaaagcttataaacCAGCATTATGTGTACTGGGTTCcagtactgtgtatttttattgtacctGAAGCATTAATTTAAGTATAGATTTATGTTGTCACTATTTTTTGATATTGTGTTATGCATATGAGATGTGAGTAATGCATTGCTTTAACCTCTGTGAGTGACCATTAACGTGTGCGTGATAAACCCGCTGAGGGTTGCCGAATGCACTGGATGCTTCTGTGAATAAAGATGTCAATTCCTTTCTTGTGCAAACTCTTTTGTGATAATTCTGCAGCATTAAGCTCTCccatcccttttttttttttttttttttttaattgttgtctAGGTTTAGCTGTAGATGTATGTTGACTGTTGATGGAAAGTGTGTCCGTTTGTCAGTGTTACAGTTGTAATGCTGTTTCTTACACAATGAAGGTGGTGTTTTCAGAAGGACAGCTTTCACGGCTGCTGTTGGCCAGGGCACAGGTGAATGGTGTTATGGCGCCCTCTGGTGGTGAAGTGGGAAATATACCGACTTGTACTTATCAGGGAGGAGTCGATTACATGAAGGCCTATCATACCTGTGGAAGTTGGGATTTGAGTCTATTTGTATGatgtattaaatttttattactgttattttaagaatatttgtattattttcctttgattttatttattggcCTTAAAAATATCTGTAGTCGTCCTGTTTTTGTCTgctttgttttcaaatatttgaaagataTTTACAGGCTTTATTATATTCTATGTTATTTTGTACTAGGTACATGTTTTATAGTAATCAGATATCGCTCtatctaatattttataatgtttataaaagttTGTATGaggaaaaaactaatatttgaagGTACTGGCACATGAAATTAATGTcattcagttctttttttttcctgattggAAACTTTCCGCAAATACATaccctttttttctgtgtaaatatCATGTTTTCTCCACTCTGTATATTggtatgtattttaaacattcgTGCAGAATATAGGACCTCATGAATAGTGGTATGGagtgaacaagaaaaaaaagagcaattaaAGAATGCCTATGAAA

Function

symbol description
rasgef1ba Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to act upstream of or within small GTPase mediated signal transduction. Is expressed in several structures, including axis; forerunner cell group; germ ring; mesoderm; and nervous system. Orthologous to human RASGEF1B (RasGEF domain family member 1B).
rasgef1b Enables guanyl-nucleotide exchange factor activity. Predicted to be involved in regulation of catalytic activity and small GTPase mediated signal transduction. Predicted to be located in early endosome; late endosome; and midbody.

NR:

description
PREDICTED: ras-GEF domain-containing family member 1B isoform X1

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238706.1 True 3307 mRNA 0.43 16 14718524 14778259
XM_043238707.1 False 3156 mRNA 0.42 14 14718524 14737308

Neighbor

gene id symbol gene type direction distance location
prkg2 prkg2,LOC107746786,LOC107599184,LOC107744862,LOC107602032 coding downstream 1194 14706377 ~ 14717330 (-)
antxr2a antxr2,antxr2a,LOC107663391,LOC107746853,LOC107661223,LOC107602005,LOC107744869 coding downstream 101646 14573555 ~ 14616878 (-)
paqr3a paqr3a,paqr3,LOC107661222,LOC107567467,LOC107599192,LOC107663396 coding downstream 217952 14493589 ~ 14500572 (-)
cnot6l cnot6l,LOC107752360,LOC107663397,LOC107567468,LOC107746779 coding downstream 371844 14334218 ~ 14346680 (-)
LOC122344799 nyap1,LOC107746410,LOC107599218,LOC101885998,LOC107596102,LOC107661215,LOC107734142 coding downstream 444387 14240339 ~ 14274137 (-)
cds1 cds1,LOC107602031,LOC107663388,LOC107744867 coding upstream 17090 14795349 ~ 14810245 (-)
wdfy3 wdfy3,LOC107681281 coding upstream 34298 14812557 ~ 14875477 (-)
si:dkey-193c22.1 si:dkey-193c22.1,LOC107661268,LOC107602027,LOC107599182,LOC107744872,LOC107746871,LOC107736603 coding upstream 97763 14876022 ~ 14880073 (-)
snx18a snx18,snx18a,LOC107599175,LOC107661231,LOC107746794,LOC107744868,LOC107602026 coding upstream 128325 14906584 ~ 14917764 (-)
hspb3 hspb3,LOC107746796,LOC107599178,LOC107744878,LOC107602000 coding upstream 140667 14918926 ~ 14919939 (-)
G36696 NA non-coding downstream 19571 14698736 ~ 14698953 (-)
G36631 NA non-coding downstream 66131 14652095 ~ 14652393 (-)
G36602 NA non-coding downstream 229796 14485814 ~ 14488728 (-)
LOC122344807 NA non-coding downstream 250747 14464304 ~ 14467777 (-)
G36567 NA non-coding downstream 368588 14349108 ~ 14349936 (-)
G36708 NA non-coding upstream 102606 14880865 ~ 14881065 (-)
G36714 NA non-coding upstream 127126 14905385 ~ 14905621 (-)
G36811 NA non-coding upstream 390788 15169047 ~ 15169358 (-)
G36967 NA non-coding upstream 783463 15561722 ~ 15562078 (-)
G36968 NA non-coding upstream 783889 15562148 ~ 15562363 (-)
LOC122345141 LOC107752369,LOC107661250,LOC107567461 other downstream 416143 14292063 ~ 14302381 (-)
znhit1 znhit1,LOC107752359,LOC107661214,LOC106567874 other downstream 435904 14279674 ~ 14282620 (-)
rnf214 LOC107663407,LOC107746393,LOC107599207,LOC107596114,LOC107734124,LOC107661199,LOC107599223 other downstream 661819 14040982 ~ 14056705 (-)
tmprss13b LOC107746439,LOC107663381,LOC107599230 other downstream 708988 14001934 ~ 14009536 (-)
LOC122345901 NA other downstream 870454 13845403 ~ 13848070 (-)
pdzd2 pdzd2,LOC107746802,LOC107681406,LOC107661237 other upstream 427692 15205951 ~ 15264945 (-)
zfr zfr,LOC107746805,LOC107681158,LOC107552600,LOC107602019 other upstream 515597 15293856 ~ 15308440 (-)
npr3 LOC107681138,LOC107746807,LOC107552598,LOC107602007,LOC107708637,LOC107661273 other upstream 571757 15350016 ~ 15367413 (-)
alkbh2 alkbh2,LOC107746816,LOC107552593,LOC107676640 other upstream 789760 15568019 ~ 15578967 (-)
cenpv cenpv,LOC107718355,LOC107676655,LOC107746825,LOC107680877,LOC107553589,LOC107552586 other upstream 925274 15703533 ~ 15709430 (-)

Expression


Co-expression Network