otpb (otpb,otp,LOC107720233,LOC107587559,LOC107555478,LOC108423578)


Basic Information

Item Value
gene id otpb
gene name otpb,otp,LOC107720233,LOC107587559,LOC107555478,LOC108423578
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 19079743 ~ 19083078 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238715.1
TTCATTTGAGCCCTATGCGCTTTTTAAAAGGGTTAAAAGTTGTAGAGTAGTTTTGGGAAGCAGTTGTGACTCCAGCAGTGCGCAATGCTCTCTCATGCCGACCTTTTGGATACTCGCCTCGGTGAGTTATCGCCACCAAACCCCGGTCTTCAGCTGCACTGGATGAAAGATGCTGCAGCCGAGCTCCTCGGACACAGAGAGGCTTTGAAGTGCAGACTAGGGGGGACTGACTCTGGACACCCCGGCGATCTTACTTCGGCTACAGAGACTGTGGAAGGGACCACTCTGCTCCCCGGGGAAGACATAAGTAATGGGGGATCCAATCCTAATGGAATGCAGCAGGTCAACGCCAAAGACCAAGAAAAGCAGCAACAGCAAAACTCTAACAATCAATCGGGTAGCCAGCAAAACCAACAGAAACAGAAACGCCACAGGACCCGCTTTACTCCAGCGCAGCTGAACGAACTGGAAAGGAGCTTTGCTAAAACACACTACCCTGATATCTTCATGAGAGAGGAACTTGCGTTACGGATTGGTTTAACGGAGTCACGGGTTCAGGTGTGGTTCCAGAATAGACGCGCGAAATGGAAGAAGCGCAAGAAGACAACCAACGTCTTCCGGGCGCCGGGCACTTTGCTGCCGACACACGGTCTGCCTCAGTTTCCGTCCGCGGCCGCGATGGGCGACAGTCTCTGCTCTTTTCACGCCAACGACACGCGCTGGGCCGCAGCCGGGATGCCCGGAGTCTCACAGCTGCAGATACCGCCCGCGCTGGGCCGACAGCAGGCTATGGCGCAGTCCCTGTCCCAGTGCAGTCTCGGAGCCGGCCCCCCGCCGAACTCCATGGGCCTTTCCGGCGGCTTATCGTCGAACGGTTCCGGTCTCCAGTCGCATCTGTATCAACCCACGTTTCCAGGGATGGTGCCCGCTTCCCTCTCGGGTCCAACGAACGTGAGCGGCTCCCCTCAGCTGTGCAGCTCGCCGGACAGTGATGTGTGGAGAGGGACTAGTATCGCCTCGCTGCGCCGCAAAGCACTTGAGCACACCGTTTCCATGAGTTTCACCTAATTTGAGCACCCGAGACGTCTTTTCTCTCGCCGCAAACCCCAAATATTCCTGAAAAACAGTCACGGAGCACTCAGGATATGAGGTTATAACTGTGAAATTACAAATTGGCAGCCTTACTGGATAATGGGACCCAAACAAACCCCCCCGACAACGCTTATATACGGCAGACGTAGACTCTAGTAATAGTTTTAATGCTTGAAatgtatgtaatttatttatgcgTTGGATTCGGTCACGTTTATTTGGCTTTCAtagttattgattttaataaccgcgagttatttatttctttatttatttacgagTATTTATTTGACTCTTCATTCACGTATGAAGAAATAACCGCAACAGTATTTATTTcgatattcctttttttttttttttttttaactaaactaaatgtaaaaggAGGCGTTATTAAGGACCACATGTGTGCATGTACAGATTGTTTTACGGCACGTACTACACGTTGGAGTGATTTTTCAGGTACATAACCGAACACGTCGGCGTAAGAGCCAGTTTCCAAATAATCCGATTCAGATGCATGTAAAATTTCAACCAGGATCAACAGGAAGTTGTTTACATAAAGCAAAACGAACTtgagtgtttgtgtatataagaaaaaaaaccttgttatCTGCTGGTATGTTTGTGGTATGTTTTAACTTATTGTCTGTGCTTATTACTGGAATAtggtttttgtaaatgtttatctTACCAAATTCAACAGAATTGGGAAGGTTTATGTAAGTgggtgaataaaatcattttaagaatTTCA
>XM_043238716.1
CGACTTTCCTTCATTTGAGCCCTATGCGCTTTTTAAAAGGGTTAAAAGTTGTAGAGTAGTTTTGGGAAGCAGTTGTGACTCCAGCAGTGCGCAATGCTCTCTCATGCCGACCTTTTGGATACTCGCCTCGGGATGAAAGATGCTGCAGCCGAGCTCCTCGGACACAGAGAGGCTTTGAAGTGCAGACTAGGGGGGACTGACTCTGGACACCCCGGCGATCTTACTTCGGCTACAGAGACTGTGGAAGGGACCACTCTGCTCCCCGGGGAAGACATAAGTAATGGGGGATCCAATCCTAATGGAATGCAGCAGGTCAACGCCAAAGACCAAGAAAAGCAGCAACAGCAAAACTCTAACAATCAATCGGGTAGCCAGCAAAACCAACAGAAACAGAAACGCCACAGGACCCGCTTTACTCCAGCGCAGCTGAACGAACTGGAAAGGAGCTTTGCTAAAACACACTACCCTGATATCTTCATGAGAGAGGAACTTGCGTTACGGATTGGTTTAACGGAGTCACGGGTTCAGGTGTGGTTCCAGAATAGACGCGCGAAATGGAAGAAGCGCAAGAAGACAACCAACGTCTTCCGGGCGCCGGGCACTTTGCTGCCGACACACGGTCTGCCTCAGTTTCCGTCCGCGGCCGCGATGGGCGACAGTCTCTGCTCTTTTCACGCCAACGACACGCGCTGGGCCGCAGCCGGGATGCCCGGAGTCTCACAGCTGCAGATACCGCCCGCGCTGGGCCGACAGCAGGCTATGGCGCAGTCCCTGTCCCAGTGCAGTCTCGGAGCCGGCCCCCCGCCGAACTCCATGGGCCTTTCCGGCGGCTTATCGTCGAACGGTTCCGGTCTCCAGTCGCATCTGTATCAACCCACGTTTCCAGGGATGGTGCCCGCTTCCCTCTCGGGTCCAACGAACGTGAGCGGCTCCCCTCAGCTGTGCAGCTCGCCGGACAGTGATGTGTGGAGAGGGACTAGTATCGCCTCGCTGCGCCGCAAAGCACTTGAGCACACCGTTTCCATGAGTTTCACCTAATTTGAGCACCCGAGACGTCTTTTCTCTCGCCGCAAACCCCAAATATTCCTGAAAAACAGTCACGGAGCACTCAGGATATGAGGTTATAACTGTGAAATTACAAATTGGCAGCCTTACTGGATAATGGGACCCAAACAAACCCCCCCGACAACGCTTATATACGGCAGACGTAGACTCTAGTAATAGTTTTAATGCTTGAAatgtatgtaatttatttatgcgTTGGATTCGGTCACGTTTATTTGGCTTTCAtagttattgattttaataaccgcgagttatttatttctttatttatttacgagTATTTATTTGACTCTTCATTCACGTATGAAGAAATAACCGCAACAGTATTTATTTcgatattcctttttttttttttttttttaactaaactaaatgtaaaaggAGGCGTTATTAAGGACCACATGTGTGCATGTACAGATTGTTTTACGGCACGTACTACACGTTGGAGTGATTTTTCAGGTACATAACCGAACACGTCGGCGTAAGAGCCAGTTTCCAAATAATCCGATTCAGATGCATGTAAAATTTCAACCAGGATCAACAGGAAGTTGTTTACATAAAGCAAAACGAACTtgagtgtttgtgtatataagaaaaaaaaccttgttatCTGCTGGTATGTTTGTGGTATGTTTTAACTTATTGTCTGTGCTTATTACTGGAATAtggtttttgtaaatgtttatctTACCAAATTCAACAGAATTGGGAAGGTTTATGTAAGTgggtgaataaaatcattttaagaatTTCA

Function

symbol description
otpb Predicted to enable DNA binding activity. Acts upstream of or within forebrain neuron development; hypothalamus development; and mammillary body development. Predicted to be located in nucleus. Is expressed in several structures, including brain; gonad; neural keel; neural plate; and neurons. Orthologous to human OTP (orthopedia homeobox).
otp Enables DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Involved in negative regulation of transcription by RNA polymerase II. Located in fibrillar center and nuclear body.

NR:

description
homeobox protein orthopedia B-like isoform X2

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0021854 hypothalamus development biological_process
GO:0021884 forebrain neuron development biological_process
GO:0007632 visual behavior biological_process
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function

KEGG:

id description
K24901 OTP; homeobox protein orthopedia

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238715.1 True 1849 mRNA 0.47 3 19079743 19083069
XM_043238716.1 False 1819 mRNA 0.47 3 19079743 19083078

Neighbor

gene id symbol gene type direction distance location
entr1 LOC107720284,LOC107699695,LOC107587560,LOC107555476,LOC107703226 coding downstream 127008 18949562 ~ 18952735 (-)
snapc4 LOC107699680,LOC107720210 coding downstream 130384 18938322 ~ 18949359 (-)
card9 LOC107699720,LOC107756300,LOC107555475 coding downstream 141778 18932700 ~ 18937965 (-)
ccdc180 ccdc180,LOC107587542,LOC107579191 coding downstream 147162 18921427 ~ 18932581 (-)
hmgcra hmgcra,LOC107720287,LOC107699716,LOC107756298,LOC107587518,LOC107703249,LOC107555490 coding downstream 202720 18869042 ~ 18877023 (-)
lhfpl2b lhfpl2b,LOC107720278,LOC107587511,LOC107699725,LOC107756302,LOC107555493,LOC107703255 coding upstream 41246 19124324 ~ 19131332 (-)
homer1b homer1b,LOC107720277,LOC107699726,LOC107555494,LOC107703256,LOC108423652,LOC108255354 coding upstream 51294 19134372 ~ 19156518 (-)
serinc5 serinc5,LOC107756307,LOC107699732,LOC107555497,LOC107703261 coding upstream 112940 19196018 ~ 19216739 (-)
cdk7 cdk7,LOC107756278,LOC107720222,LOC107703229,LOC107699696 coding upstream 134657 19217735 ~ 19221166 (-)
LOC122345207 LOC107720271,LOC107699734,LOC107587503,LOC107756310,LOC107703263 coding upstream 214221 19297299 ~ 19313145 (-)
G37757 ckmt2b,ckmt2,LOC107720280,LOC107756255 non-coding downstream 3969 19068914 ~ 19075774 (-)
G37637 NA non-coding downstream 265972 18813564 ~ 18813771 (-)
G37571 NA non-coding downstream 688095 18373317 ~ 18391648 (-)
G37570 NA non-coding downstream 706493 18372208 ~ 18373250 (-)
G37569 NA non-coding downstream 708926 18370523 ~ 18370817 (-)
G37774 NA non-coding upstream 39947 19123025 ~ 19123308 (-)
G37776 NA non-coding upstream 49735 19132813 ~ 19133144 (-)
G37792 NA non-coding upstream 141274 19224352 ~ 19225429 (-)
G37799 NA non-coding upstream 198787 19281865 ~ 19282092 (-)
G37800 NA non-coding upstream 199299 19282377 ~ 19282691 (-)
LOC122344738 acsl1b,LOC107571490,LOC107678619,LOC107758469,LOC107552354,LOC108274927 other downstream 1729363 17346469 ~ 17350380 (-)
LOC122345693 NA other downstream 2219812 16787809 ~ 16859931 (-)
G37277 ncam1a,LOC107681081,LOC107548183,LOC107756101 other downstream 2366576 16687260 ~ 16713167 (-)
G37258 ncor2,LOC107687981,LOC107684513,LOC107753125 other downstream 2446622 16596855 ~ 16633121 (-)
LOC122344728 uprt,LOC107733222,LOC107672530,LOC107680369,LOC107748634 other downstream 2701228 16376266 ~ 16378515 (-)
mtx3 cmya5,mtx3,LOC107699728,LOC107703257,LOC107720274,LOC107756304,LOC107555495,LOC107756305,LOC107720223,LOC107703259 other upstream 92385 19175463 ~ 19183978 (-)
kcnt1b LOC107720246,LOC107699766,LOC107672542 other upstream 781941 19865019 ~ 19935576 (-)
G38058 NA other upstream 968581 20051659 ~ 20055798 (-)
G38140 si:ch211-236k19.4,LOC107552622,LOC107740829,LOC107699705,LOC107731026,LOC107672535,LOC107587659 other upstream 1042511 20125589 ~ 20127390 (-)
LOC122345844 ppil3 other upstream 1311653 20394731 ~ 20396734 (-)

Expression


Co-expression Network