trabd2a (trabd2a,LOC107558059,LOC107570885,LOC107717329)


Basic Information

Item Value
gene id trabd2a
gene name trabd2a,LOC107558059,LOC107570885,LOC107717329
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 30122226 ~ 30164017 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238723.1
aGCTCGCTCAGGACTTGTTGCGCTGCAGTGAGAGTCTGAAGCCGCGGAGGAACAGAAGAGACTCGTTTGGAGAGTTGGAGGAGAAACTCAAAGATCTGATCCGCTAAAGATCTCCTCGGCGCTTCGAGTGTGTGTTCGTGCGATCAGGATGTGTGTGAAGTGAGCTTCGGGACAGACCGCATCTGCTCGAGTGGAGCTGGAGCTTCTCTGACGAGCATCATGTCGTAGAAGTTGCTCCTCGAGCTCTTCTggctcagtccagctctcgtcCAGGATGGCTCACTTCACTTTCGTGGCATGTTCTGATCGTCGGTGAAGAAGAGTCGAGTTCGCTGGAGATTCTGCAGAAGACTGAGaggatggtggtggtggtggttaGTTGGGGCGCTTTTCTCCAAACCTGCTTGATATTGATGGTGAGAGCAAACCAGCACAACCCCAGAGAGACCAGCTGCGACCTTCACGCCAAACAAAGCGAGCTCAACTCTTTCCTGTGGACTATAAAGCGAGACCCGCCCTCGTACTTCTACGGCACCATTCACGTCCCGTACACGCGCGTCTGGGACTTCATCCCCGAGAACTCCAAGCAGGCCTTCCAGGAGAGCAGCATCGTGTACTTCGAGCTGGACCTGACCGACCCGTACACCATCTCGGCTCTGAGCAGCTGCCAGCTCCTGCCGCAGGGAGAGAAGCTGCAGGACCTGCTGCCCAAAGACATCTACCGCCGGCTCAAGACGCACCTGGACTACGTCAAGCTCATGCTGCCCTCCTGGATGACCCCTGACCAGCGGGGCAAGGGCCTGTATGCAGACTACCTGTTCAACGCCATCGCCGGGAACTGGGAGCGCAAGCGGCCCGTCTGGGTGATGCTGATGGTCAACTCTCTGACCGAGGCCGACATCAAGACACGCGGCGTTCCCGTGCTGGACCTGTATCTGGCTCAGGAGGCccagaggatgaggaagaggaccGGAGCCGTGGAGAAGGTGGAGGAGCAGTGCCATCCTCTGAACGGACTCAACTTCTCTCAGGTGATCTTCGCTCTGAATCAGACGCTCCTGCAGCAGGAGAGTCTCCGAGCCGGGGCCCTGCCGGTCCCCTACACCACAGAGCACCTGATCAAGCACTACAACTGTGGAGACCTGAACTCCATCATCTTCAACCACGACACCTCACAGGTGCCGAGCTTCCAGAACGTGACGCTTCCTCCGAACGAGCAGGTGACGGCGCAGGAGATCGAGAGCTACTTCCGGCAGGAGCTGATCTACAAGAGGAACGAGCGCATGGGCCGCCGCGTGCGAGCGCTGCTGGACGAACACCCCGGAAAAACGTTCTTCTTCGCCTTCGGAGCAGgtcaCTTTCTGGGAAACAACACTGTGATTGATGTCCTGAGACGTGAAGGTTATGAGGTGGAGCACACACCTGCTGGACAGATGCtacacagCAGAAGGTCAGGAGAGCTGCCGGACGCGGACGCCCCGCTGGAGCCGTTCCTCCACGAGCGCCCAGATCTTCAGGAGGACGAGGAGCATCTGCTGGAGCTCCTGGAGAAGGTGGAGCACAAGCTGAAGAAGAAGCGGCGAAACAAGCAGAAGAAGCAGCGCCATCGGCAGTTCAACGAGCTCTGGGTGCGGATGGAGGAGAGCGTGACGGCCGAGGCTCCGCCTCCTGTCGTCCGCATCATCAACGGTTACATCACGGTACAGGCCCACCCACAGGAGCACGACCGAGCCAATCAGCACAGGACGTTCTCAGGCTCCGCCTCCTGGAGCCCCGCCCTCCCTGCTCTGTGTGTCCAgatcctgctgctgctgctgctttcgTGACCGGACTTCAGCTCTTCCAGAAACACTTCCTTGTAAATATCAGATGTATTATAGATGTAATTTAGAGTTTTGAATAAAGCATTTGTTTGTTcacttattatataaatatataaataagagtcattatatttttgtgacTAAATCAGCTACTAACCAGCTTAACCGGCCTCAGTCAAGAAAAAACCATCAGGTCAGGAAAACAGATGTACGGTGATTCTTCCTCTTCGGTCAACCTCGTGCTTTTGATGAATGTctaaaatgttgtgtttgtgacATAGAAACGagtcatttaatttattgaataGATAGTGTTAGTTGATCTAAATGTGTTTATGGCAGAATGAGGCAATGTAAATCATATCTGGTGTTTGTGatgttaaaagaaataaagtatttatatagttCAGTGTTCTCCAAACGAAAGATGAATGCAGACTCTCGTTCTTCTCTCGACGCTGGAACAGAAGCAGTGTTTTATGAAGGATCTTCATCTTCTTGACATGGCTCTTCTGTccttcatcctcttcctcctcctcttcctctcagcTGAGATCTTCACCCAACCACCAAGAGGTCTTTTATTATgctctttaaattaaatcacaagaccaatttatgcttttgaatggaATGGTTTCTTTCTGGTTGCCAGCGAATGTGTGAAAGGATTTTCTTTGTAAATCATTcttcattaacaaaaaatgttgtgGTTATTACCACGGTTTATTGATGAGAGCTGATCCGAGATCAGACAAATACAAACCCAACTCCAGAGTGTTGTTTTGATGTGGCTGTAGTTAACCTTAGTTTAGATTGCTGTATGATTCTGGCCAGTTTTGAGGAAAGTTTCTTCGGTTGTTAACAAGCTTTGTTCAGTACTGAAGTCACCTCTTCAGAAGTCTTCATGGATCAAACTGGGAATCGTTTTCAGACGAAATGCATGCCATgaacacatttttctaaatcCACAAACACTTTATCATTCATACTCTACAACCTGAAAAAGCGCATTCAGATCAGAAGGATGCTAAACTGTCCATTTCTGCAGGAATTATATTCAAATTTCTGTTGAATATTTATAGGGAAATCGAGTAATAATTAATCCAAACACAACTAAATGCTAACACAAGATACTTACACAACTACCTCACTTTGCcataagttaaatatattaggtttctaatataaataaacatattgtaGGAACTTAAAGCTCTTTGCAATGACTTTTATCATAAAGATAAGAGAAACTCGTTCCGTCTCATCAGGTCATGACATAACatagttattatataatatctcAATATGATGTCACTGCTGACATCATACGAGCCTTTCAGTGTGTTATCAGGGCTCTGAAGATCTCACGATGAAATGAAGACATCATGTTCTTTTTTACGTAAATGTCTAGAAAGCAGAAAAtgtcaaacctgttcattagaagggATGTGTCCGATCTAGTACTTTGTATCTGATCTTTTAAGATGTGGTTCTTCACACAGATTATTCACAAGCGGCTTCAACAcagaaatcataaataatatcaGAGTTCTTTCTGAAGAAGGTGGTTACGGTCAGAAATTCAGCAGGAGTGGGAATAAGAAAACTGAAGGGCTGTTTAACACACATTAGAGAAAGTGGAAATATTAGCGTGAACTGCATGAACATCGAGACTGAATGCATAA
>XM_043238724.1
aGCTCGCTCAGGACTTGTTGCGCTGCAGTGAGAGTCTGAAGCCGCGGAGGAACAGAAGAGACTCGTTTGGAGAGTTGGAGGAGAAACTCAAAGATCTGATCCGCTAAAGATCTCCTCGGCGCTTCGAGTGTGTGTTCGTGCGATCAGGATGTGTGTGAAGTGAGCTTCGGGACAGACCGCATCTGCTCGAGTGGAGCTGGAGCTTCTCTGACGAGCATCATGTCGTAGAAGTTGCTCCTCGAGCTCTTCTggctcagtccagctctcgtcCAGGATGGCTCACTTCACTTTCGTGGCATGTTCTGATCGTCGGTGAAGAAGAGTCGAGTTCGCTGGAGATTCTGCAGAAGACTGAGaggatggtggtggtggtggttaGTTGGGGCGCTTTTCTCCAAACCTGCTTGATATTGATGGTGAGAGCAAACCAGCACAACCCCAGAGAGACCAGCTGCGACCTTCACGCCAAACAAAGCGAGCTCAACTCTTTCCTGTGGACTATAAAGCGAGACCCGCCCTCGTACTTCTACGGCACCATTCACGTCCCGTACACGCGCGTCTGGGACTTCATCCCCGAGAACTCCAAGCAGGCCTTCCAGGAGAGCAGCATCGTGTACTTCGAGCTGGACCTGACCGACCCGTACACCATCTCGGCTCTGAGCAGCTGCCAGCTCCTGCCGCAGGGAGAGAAGCTGCAGGACCTGCTGCCCAAAGACATCTACCGCCGGCTCAAGACGCACCTGGACTACGTCAAGCTCATGCTGCCCTCCTGGATGACCCCTGACCAGCGGGGCAAGGGCCTGTATGCAGACTACCTGTTCAACGCCATCGCCGGGAACTGGGAGCGCAAGCGGCCCGTCTGGGTGATGCTGATGGTCAACTCTCTGACCGAGGCCGACATCAAGACACGCGGCGTTCCCGTGCTGGACCTGTATCTGGCTCAGGAGGCccagaggatgaggaagaggaccGGAGCCGTGGAGAAGGTGGAGGAGCAGTGCCATCCTCTGAACGGACTCAACTTCTCTCAGGTGATCTTCGCTCTGAATCAGACGCTCCTGCAGCAGGAGAGTCTCCGAGCCGGGGCCCTGCCGGTCCCCTACACCACAGAGCACCTGATCAAGCACTACAACTGTGGAGACCTGAACTCCATCATCTTCAACCACGACACCTCACAGGTGCCGAGCTTCCAGAACGTGACGCTTCCTCCGAACGAGCAGGTGACGGCGCAGGAGATCGAGAGCTACTTCCGGCAGGAGCTGATCTACAAGAGGAACGAGCGCATGGGCCGCCGCGTGCGAGCGCTGCTGGACGAACACCCCGGAAAAACGTTCTTCTTCGCCTTCGGAGCAGgtcaCTTTCTGGGAAACAACACTGTGATTGATGTCCTGAGACGTGAAGGTTATGAGGTGGAGCACACACCTGCTGGACAGATGCtacacagAAGGTCAGGAGAGCTGCCGGACGCGGACGCCCCGCTGGAGCCGTTCCTCCACGAGCGCCCAGATCTTCAGGAGGACGAGGAGCATCTGCTGGAGCTCCTGGAGAAGGTGGAGCACAAGCTGAAGAAGAAGCGGCGAAACAAGCAGAAGAAGCAGCGCCATCGGCAGTTCAACGAGCTCTGGGTGCGGATGGAGGAGAGCGTGACGGCCGAGGCTCCGCCTCCTGTCGTCCGCATCATCAACGGTTACATCACGGTACAGGCCCACCCACAGGAGCACGACCGAGCCAATCAGCACAGGACGTTCTCAGGCTCCGCCTCCTGGAGCCCCGCCCTCCCTGCTCTGTGTGTCCAgatcctgctgctgctgctgctttcgTGACCGGACTTCAGCTCTTCCAGAAACACTTCCTTGTAAATATCAGATGTATTATAGATGTAATTTAGAGTTTTGAATAAAGCATTTGTTTGTTcacttattatataaatatataaataagagtcattatatttttgtgacTAAATCAGCTACTAACCAGCTTAACCGGCCTCAGTCAAGAAAAAACCATCAGGTCAGGAAAACAGATGTACGGTGATTCTTCCTCTTCGGTCAACCTCGTGCTTTTGATGAATGTctaaaatgttgtgtttgtgacATAGAAACGagtcatttaatttattgaataGATAGTGTTAGTTGATCTAAATGTGTTTATGGCAGAATGAGGCAATGTAAATCATATCTGGTGTTTGTGatgttaaaagaaataaagtatttatatagttCAGTGTTCTCCAAACGAAAGATGAATGCAGACTCTCGTTCTTCTCTCGACGCTGGAACAGAAGCAGTGTTTTATGAAGGATCTTCATCTTCTTGACATGGCTCTTCTGTccttcatcctcttcctcctcctcttcctctcagcTGAGATCTTCACCCAACCACCAAGAGGTCTTTTATTATgctctttaaattaaatcacaagaccaatttatgcttttgaatggaATGGTTTCTTTCTGGTTGCCAGCGAATGTGTGAAAGGATTTTCTTTGTAAATCATTcttcattaacaaaaaatgttgtgGTTATTACCACGGTTTATTGATGAGAGCTGATCCGAGATCAGACAAATACAAACCCAACTCCAGAGTGTTGTTTTGATGTGGCTGTAGTTAACCTTAGTTTAGATTGCTGTATGATTCTGGCCAGTTTTGAGGAAAGTTTCTTCGGTTGTTAACAAGCTTTGTTCAGTACTGAAGTCACCTCTTCAGAAGTCTTCATGGATCAAACTGGGAATCGTTTTCAGACGAAATGCATGCCATgaacacatttttctaaatcCACAAACACTTTATCATTCATACTCTACAACCTGAAAAAGCGCATTCAGATCAGAAGGATGCTAAACTGTCCATTTCTGCAGGAATTATATTCAAATTTCTGTTGAATATTTATAGGGAAATCGAGTAATAATTAATCCAAACACAACTAAATGCTAACACAAGATACTTACACAACTACCTCACTTTGCcataagttaaatatattaggtttctaatataaataaacatattgtaGGAACTTAAAGCTCTTTGCAATGACTTTTATCATAAAGATAAGAGAAACTCGTTCCGTCTCATCAGGTCATGACATAACatagttattatataatatctcAATATGATGTCACTGCTGACATCATACGAGCCTTTCAGTGTGTTATCAGGGCTCTGAAGATCTCACGATGAAATGAAGACATCATGTTCTTTTTTACGTAAATGTCTAGAAAGCAGAAAAtgtcaaacctgttcattagaagggATGTGTCCGATCTAGTACTTTGTATCTGATCTTTTAAGATGTGGTTCTTCACACAGATTATTCACAAGCGGCTTCAACAcagaaatcataaataatatcaGAGTTCTTTCTGAAGAAGGTGGTTACGGTCAGAAATTCAGCAGGAGTGGGAATAAGAAAACTGAAGGGCTGTTTAACACACATTAGAGAAAGTGGAAATATTAGCGTGAACTGCATGAACATCGAGACTGAATGCATAA

Function

symbol description
trabd2a Predicted to enable Wnt-protein binding activity and metalloendopeptidase activity. Predicted to be involved in head development and negative regulation of Wnt signaling pathway. Predicted to act upstream of or within Wnt signaling pathway and proteolysis. Predicted to be integral component of organelle membrane and integral component of plasma membrane. Orthologous to human TRABD2A (TraB domain containing 2A).

NR:

description
metalloprotease TIKI1-like

GO: NA

KEGG:

id description
K25185 TRABD2; metalloprotease TIKI

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238723.1 True 3511 mRNA 0.48 7 30122226 30164017
XM_043238724.1 False 3508 mRNA 0.48 7 30122226 30164017

Neighbor

gene id symbol gene type direction distance location
june LOC107687249,LOC107721038,LOC107563389,LOC107684195,LOC107735627 coding downstream 88014 30027830 ~ 30034212 (-)
thap1 thap1,LOC107563391,LOC107684196,LOC107687269,LOC107558071 coding downstream 110217 30006999 ~ 30012009 (-)
LOC122344968 mob3b,LOC107558072,LOC107563392,LOC107721040,LOC108414757 coding downstream 116257 29997436 ~ 30005969 (-)
LOC122344964 LOC107721044,LOC107563395,LOC107558067 coding downstream 151317 29967407 ~ 29970909 (-)
sapcd2 LOC107742165,LOC107660368,LOC107565658 coding downstream 179049 29928823 ~ 29943177 (-)
mbd2 mbd2,LOC107717343,LOC107565141,LOC108438699,LOC108260323,LOC105902559 coding upstream 327014 30491031 ~ 30511279 (-)
LOC122345124 si:zfos-128g4.1,LOC107675886,LOC107577831 coding upstream 356589 30520606 ~ 30523419 (-)
LOC122345715 LOC107687242,LOC107717337,LOC107558070 coding upstream 371817 30535834 ~ 30537915 (-)
LOC122344973 NA coding upstream 376480 30540497 ~ 30542440 (-)
LOC122344972 NA coding upstream 412271 30576288 ~ 30580328 (-)
G40418 NA non-coding downstream 4363 30116408 ~ 30117863 (-)
G40422 NA non-coding downstream 15488 30105842 ~ 30106738 (-)
LOC122345788 NA non-coding downstream 67429 30053612 ~ 30054797 (-)
LOC122344857 NA non-coding downstream 76078 30039454 ~ 30046148 (-)
G40268 LOC107741500,LOC107562332,LOC107704753 non-coding downstream 316424 29801194 ~ 29805802 (-)
G40654 NA non-coding upstream 133377 30297394 ~ 30419407 (-)
G40676 NA non-coding upstream 318004 30482021 ~ 30482226 (-)
G40677 NA non-coding upstream 319999 30484016 ~ 30484242 (-)
G40671 NA non-coding upstream 326497 30490514 ~ 30490878 (-)
G40680 NA non-coding upstream 340779 30504796 ~ 30512970 (-)
rnf170 rnf170,LOC107721034,LOC107687247 other downstream 28650 30087966 ~ 30093576 (-)
LOC122344966 LOC107749532,LOC107566852,LOC107742171,LOC107565644,LOC107690083 other downstream 193551 29924702 ~ 29928675 (-)
eng LOC107562335,LOC107704777,LOC107741503 other downstream 467165 29614719 ~ 29655061 (-)
G40182 brinp1,LOC107715673,LOC107674904 other downstream 632022 29460585 ~ 29490204 (-)
LOC122345120 LOC107728794,LOC107696375,LOC107590009,LOC107739482 other downstream 796111 29323982 ~ 29326115 (-)
fubp3 fubp3,LOC107689604,LOC107687236,LOC106566971 other upstream 426826 30590843 ~ 30613141 (-)
G40711 NA other upstream 467011 30631028 ~ 30733360 (-)
G40713 lzts3,LOC107567954,LOC107687254,LOC107574519,LOC795227,LOC107665914 other upstream 625616 30789633 ~ 30792719 (-)
G40752 hspa5,LOC107686379,LOC107743071,LOC107687227,LOC107567952,LOC107734417,LOC107734415,LOC107686377 other upstream 653715 30817732 ~ 30826358 (-)
LOC122344987 LOC107591496,LOC107663763,LOC107725109,LOC107734348,LOC107563429,LOC107654309 other upstream 1167332 31331349 ~ 31350449 (-)

Expression


Co-expression Network