CI01000004_15694735_15698103 (SDR39U1)



Basic Information


Item Value
gene id CI01000004_15694735_15698103
gene name SDR39U1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information


Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 15694735 ~ 15698421 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence


>CI01000004_15694735_15698103.mRNA
ATGGCCGCAGTAACGCTCCAGTGTGGATCACGTGGCGGAGGCTCGGGGTTTGTGGGTCGTGAGCTGACACGTTTGCTGAAAAGCAAAGGTCATGAAATCACAATCATTTCCAGGCAGCCTGGTCCAGGACAAATAACATGGGCTGATGTAGAGTCAGGAGGCCTCCCGCCATGTGAGGGCGCTGTGAATCTAGCAGGGGAGAGTATTATGAACCCTTTGAGATGCCGAATAAACACTACCAGAATTCTTGCCCAAGCTATTGCTGCGTCACCTTCTCCACCACATTCATGGGTGCTTGTTACAGGAGTAGCGTGTTATAAACCCAGTCTTCAAACCCAGTACTCTGAAGAGAGCGACTGGACACCATTTGACTTCCTGTCTCGCCTGGTGAAAGAGTGGGAGGGGGCAGGACAACTTCCTGAAAACAGTGCTAAGAAAACAAGACGAGTGATCATCAGACCAGGTGCGGTGTTAGGGCGTGACGGTGGTGCCATGAAACAGATGATGATTCCCTTTTGGCTTGGCCTGGGTGGGACACTTGGCTCGGGACGACAGCCCTTCCCTTGGATCCATGTTTCAGACCTTGCTGGCATCATTGCTCATACCTTGGAGCCCCATGAAGAACATTCATCCACAGAGCCAGATGTATTTAATGGAGTCGCGCCTGCAATGAATACAAATTTTGAATTCACTAAAGAGTTGGGCAGGGCTCTAAAAAGACCTACTATCTTCCCTGTGCCGGGCTTTTTCTTGGATGTTTTCCTCGGTTCTGAGAGAGCTGTTATCCTCACACAAGGCCAGAAAGTGGTGCCCAAGAGAACTCTTGAGTCAGGGTTTAACTTTCAATACCCAGATCTTACTTCTGCTTTAAAAGAAATCGTTGGATAATATGAGTGATCAGTCAAAATAGAGACGTGAGAAAATTCTTTGGTTACACTTTATTTTAAGGTGACATAGTTACTCAAATACTCAAATAAGTACTGAGTAATATTAATTAACTACATGTACTTACTATAGAGTTATGGTTAGGGTTTGGTTTAGGGTTAGTTACTTGTAATTATGCATAATTTACTGGTATTACTATAATAAGTATATGTTGTAACGTGTAACTACAGCATATTAAAATAAAGTGTTACCGATTCTTTTATGCATACTAGTGCAGTTATAACACACATTTTTTTAAATTTGAATTAAGCATATAAAAAA

Function


symbol description
sdr39u1 Predicted to enable catalytic activity. Orthologous to human SDR39U1 (short chain dehydrogenase/reductase family 39U member 1).

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG:

id description
K07071 K07071; uncharacterized protein

RNA


RNA id representative length rna type GC content exon number start site end site
CI01000004_15694735_15698103.mRNA True 1206 mRNA 0.43 6 15694735 15698421

Neighbor


gene id symbol gene type direction distance location
CI01000004_15687242_15691238 NA coding upstream 3458 15685262 ~ 15691277 (+)
CI01000004_15645965_15650241 NA coding upstream 44461 15645965 ~ 15650274 (+)
CI01000004_15631508_15632389 NA coding upstream 62332 15631430 ~ 15632403 (+)
CI01000004_15444403_15453408 SPPL2, SPPL2B coding upstream 240558 15444403 ~ 15454177 (+)
CI01000004_15400244_15414139 NA coding upstream 280359 15400244 ~ 15414376 (+)
CI01000004_15711867_15722470 PARP2 coding downstream 13446 15711867 ~ 15722582 (+)
CI01000004_15787382_15803133 NA coding downstream 88961 15787382 ~ 15803144 (+)
CI01000004_15825817_15827475 TEP1 coding downstream 127396 15825817 ~ 15827603 (+)
CI01000004_15859240_15861471 APOL1 coding downstream 160819 15859240 ~ 15863449 (+)
CI01000004_15867404_15875293 NA coding downstream 168564 15866985 ~ 15875304 (+)
G33882 NA non-coding upstream 72415 15620079 ~ 15622320 (+)
G33834 NA non-coding upstream 100360 15586066 ~ 15594375 (+)
G34142 NA non-coding upstream 137951 15556405 ~ 15556784 (+)
G34141 NA non-coding upstream 138522 15555855 ~ 15556213 (+)
G34101 NA non-coding upstream 212420 15481920 ~ 15482315 (+)
G34181 NA non-coding downstream 50228 15748649 ~ 15748926 (+)
G34183 NA non-coding downstream 53242 15751663 ~ 15752548 (+)
G34186 NA non-coding downstream 57614 15756035 ~ 15756391 (+)
G34188 NA non-coding downstream 69331 15767752 ~ 15767991 (+)
G34192 NA non-coding downstream 77838 15776259 ~ 15776513 (+)
CI01000004_15091390_15096502 GA45B, GADD45B, GADD45BB other upstream 602766 15091200 ~ 15097173 (+)
CI01000004_14036114_14036449 KIAA0040 other upstream 1657835 14035393 ~ 14039142 (+)
CI01000004_12646972_12652534 NA other upstream 3039024 12646838 ~ 12652570 (+)
G31865 NA other upstream 3499588 12192130 ~ 12197418 (+)
CI01000004_11666900_11667179 NA other upstream 4027076 11666900 ~ 11667659 (+)
G34220 NA other downstream 240936 15939357 ~ 15939950 (+)
G33815 NA other downstream 364994 16063415 ~ 16066464 (+)
G34400 NA other downstream 1278907 16971995 ~ 17025976 (+)

Expression



Co-expression Network