trmt2a (trmt2a,LOC107687689,LOC107672731)


Basic Information

Item Value
gene id trmt2a
gene name trmt2a,LOC107687689,LOC107672731
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 10749401 ~ 10754264 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238726.1
taattagtgtTACAACTAGATTTTAATAAAAGGTATAGACCTTAACCGGCTTTCCCACAATACGCTGCTTTTGACACGTGTTTCTAAAGATGGCAgcttgcatgcatgcataactTCACAGTGCTTTTAGAGCTCCTTATTGTTTCATAGGGAAGAATACTGAATAACAAGAGGATTATTTCACATTGCAGGACAAAATGACAGATATTGCTCTTGACAAGACTGATCCAGCTGGTTCATTACCCAGCACAGAGAAAGAACCAGACGATGTAATAGAAGAGAAAAACGAAGAGAATCcggcagcaacagcagcagaagGAGAGGGTGCAGCAGGTGGTGTGTATCGCTACATTAAAGGAGATCTCTTCACCTCTGAGATCTTCAAAGTTGAGATTCAGAACTTGCCCAAGTACATTGGCTTTAACGACCTGAAGAAGTTCCTCAACAAGCATGGCATCAATCCTCACAAAATCAAGCTGTTTAGCAAACAGATGTTTGCTTTTGTGACTTTTAAGAATCAGGAGGAAAGGGACAAAGCCATGAAGGCAGTGCACGGCATGCAGTGGAAGAGTAAAGTGCTGAGTGTTCGTCTGGCCAAGCCCAAAGCTGATCCCATCCTCAAGAAGAGGAAACAAGAGGAGGAAGCAGAAGGTGGACAACCTGGTGCAAAACGTGCAGCCGGAAGCCAGGAGgcagaggaggatgaggaagagccTCTCGATATCCAGATTGCCAATGCTGTGACACCGTTGTGGAATGTGCCTTATGAAGAACAGCtgaaaaggaaagagagagaagttGAAGGCATTTTGCACAAACTGACCAGAGAAATCGGTAACAACAACAAAGCCATGCTGCCCTGGTTGTTTGTTCAAAAAGAGAAGTACAACAAACTGTGCTGTCCACTCGAGGCCATACGACCATCACCTGTGCAGACGGAGTACAGGAATAAGTGTGAGTTTGTGATTGGAGTGGGAGCAGATGGAGAGGATAAGACGGTGGGCTTTCGTTTAGGCAAGTATAAAGGAGGATCCTGTGCTGTAGTGAGTCCATCAGAAACCACCCATGTGTCTTCTGAGGCCAAGAGGGTTGTGCAGGGTTTCCAGAAGTTCATCagGACAACTCCGTATGCAGTATACAGTCCAGAGACTTACGAGGGTCATTGGCGGCAGCTTACAGTCCGAACAAGCAGGATAAAGCAAACCATGGCCATGGTGTTCTTCAACCCCCAGAAACtccaagaaaaagaaattgaGGAACTTAAACGAAACCTGCGTCAGTATTTTACTGAAGGAGAAGGAAAAGAAAGCGCCATCACTTCATTGTACTTTGTGAGAATGGGACAAAGGACATCTGCGGGTACAGAGGACCTGCCGTGTGAACATGTGACTGGTGAAGAATGGATTCACGAAGAGCTTCTCGGACTAAAATTCCGCATCTCTCCACACTCATTCTTTCAGACGAACACCCCTGCTGCTGAGGTTCTGTACTCTGCTGTGGGTGAATGGGCACAGCTGGACCAGGACAGCACTGTGCTGGATGTGTGCTGTGGAACAGGAACCATCGGCATCTCGCTGGCAAAGAGAGTGAAAAAGGTGATTGGCATAGAGTTGTGCCAGGAGGCAGTGGACGATGCCAAGGCTAACGCTGAAGCTAACGgcTTGACCAATGTGGAATTCCACTGTGGAAAGGCTGAAGATGTGTTCCCCACAGTTCTTAATGCTGTTGTGTCCCAACGTCACGCAATCGTTGACCCTCCGAGAGCAGGGCTACATTCCAAAGTTATTCTAGCAATTAGAAGAGCAGAGCATCTCAAGAGACTCATCTACGTCGCCTGCAATGCCAAAGCAGCtatgaataattttattgaTCTCTGCAGAGCTGTTTCTAACCGTGTCAAAGAGGAGCCTTTCCGTCCAGTGAGAGCTATGGCTGTTGACCTCTTCCCCCAGACCATGCACTGTGAAACCATCCTGCTGTTTGAAAGAGTGGACTACAGCTCTGACACTCAGACGGCAGAAAGCTGAAGCTTTACCACCCATCATGGCTGTTTCTCTTCCCTTCAAACACCAATTTTCTTACTTTCTTAATAGTTCAACTGACTTGATCAAAGTGCTCAAAccatgactgtttttttttgtataggcttttctcttttctttgcattaaaaaccacccaataaaaaaaaaaacaagacatcaGTTTTCTGgtcattaatttatttgcataaacaaATCACTGCGTATCAGTGATCATGTGTCAcatgaaatgaattttaatgctTTACTTGCAGCTAAATCATCCAACATTATCCCTTCAATGAGTGACTAAAAAGCACGCATTTCTTCACACACTTAATACACACGTAGCAAGACTGACAGGACAAGGCGTACACTCCAGACATTTATTGGGAAAGCATATTCTCTAAGCACTGCCTCAGTATGGCAGCATCCTTGTGCTCATGGAAAACAGGAAAGTGCCTTTACAAACGCGTTGGAACATTCAgaagcacacaaactaaaatACTAACCTCAACGAcagtgcattgcatttttttttagtcgCTGTCTCAAGAAAACCTGATTCCTCCCCCTCACTCAGTGTGTTAAACAGACTTCCTGTCAGACCTTCCTGTCATATCTTAAGGCCAGAATTTTATCTCTCCTCCCATTATAGTTTGAGGGGAAGTGGTGGTTTTCTTCCAACAGGGACCATATTTTAATCCAGCAGTTATtgccttttttaatattttgttccatacgtttataaatatttaatgaatagctATGCAGCAATAttctataaaaatgcataagaCTTAAAGCTTTGGTTCACACTGTTCTTCAAGCTATTGAATATAACGACATGGTCTGATTTTCTTCGAGGTATGGAGTTACCACCTTTGTTTTTAGGTAGACTGCCTTATGAAATGAATAGAGTTTCAAACTATTTAATACACCACCGTGATAACATCTGAACAAAATGTGCACACAATCACCCACTGTAGCaaatgaccacaaaaccataGCAAAAAGTttaagacaaacacacacacacacacacaca

Function

symbol description
trmt2a Predicted to enable RNA binding activity and RNA methyltransferase activity. Predicted to act upstream of or within RNA processing and methylation. Is expressed in several structures, including cerebellum; digestive system; midbrain; pectoral fin musculature; and retina. Orthologous to human TRMT2A (tRNA methyltransferase 2 homolog A).

NR:

description
tRNA (uracil-5-)-methyltransferase homolog A-like

GO:

id name namespace
GO:0006396 RNA processing biological_process
GO:0032259 methylation biological_process
GO:0008173 RNA methyltransferase activity molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K15332 TRMT2A; tRNA (uracil-5-)-methyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238726.1 True 3067 mRNA 0.43 14 10749401 10754264

Neighbor

gene id symbol gene type direction distance location
LOC122345984 si:ch211-106a19.1,LOC107599964,LOC107744438,LOC107730710,LOC107592368,LOC103470291,LOC106959535,LOC107672777 coding upstream 48011 10690779 ~ 10701390 (+)
rasl10a rasl10a,LOC107672696,LOC107744439,LOC107730711,LOC107592305,LOC107599975 coding upstream 62363 10673979 ~ 10687038 (+)
ap1b1 ap1b1,LOC107599930 coding upstream 76831 10647593 ~ 10672570 (+)
gas2l1 gas2l1,LOC107673400,LOC107744437,LOC107599929,LOC107592306,LOC107672792,LOC107730708 coding upstream 102258 10621657 ~ 10647143 (+)
ewsr1b LOC107599962,LOC107744436,LOC107673396,LOC107592307,LOC107672746 coding upstream 129509 10611574 ~ 10619892 (+)
tia1l tia1l,LOC107726385,LOC107592301,LOC107672787,LOC107599933,LOC107744444 coding downstream 8175 10762439 ~ 10768631 (+)
znf703 znf703,LOC107599934,LOC107687685,LOC107744445,LOC107726392,LOC107672788,LOC107592299 coding downstream 116074 10870338 ~ 10874092 (+)
si:ch211-137i24.12 LOC107744495,LOC107687707,LOC107599977 coding downstream 150670 10904934 ~ 10908357 (+)
phf23a phf23a,LOC107599938,LOC107744450,LOC107687682,LOC107726379,LOC107592297,LOC107672758 coding downstream 164509 10918773 ~ 10922782 (+)
plscr3a plscr3a,LOC107744496,LOC107599978,LOC107687706,LOC107592298,LOC107726366 coding downstream 168606 10922870 ~ 10926030 (+)
G35081 NA non-coding upstream 201776 10547221 ~ 10547625 (+)
G35043 NA non-coding upstream 415593 10333219 ~ 10333808 (+)
G35042 NA non-coding upstream 419079 10329889 ~ 10330322 (+)
G35041 NA non-coding upstream 421940 10327031 ~ 10327461 (+)
G35040 NA non-coding upstream 422687 10325866 ~ 10326714 (+)
G35197 NA non-coding downstream 59193 10813457 ~ 10816301 (+)
G35202 NA non-coding downstream 83748 10838012 ~ 10838367 (+)
G35229 NA non-coding downstream 190792 10945056 ~ 11019192 (+)
G35267 NA non-coding downstream 432990 11187254 ~ 11187694 (+)
G35274 kat5,LOC106563454,LOC107597226 non-coding downstream 450236 11204500 ~ 11209405 (+)
osbp2b si:ch211-106a19.1,LOC107687692,LOC107744438,LOC107726355,LOC107672777,LOC107592367 other upstream 13342 10717531 ~ 10736059 (+)
fam219ab fam219ab,LOC107744421,LOC107595023,LOC107673386,LOC107752501,LOC107672754,LOC107592322,LOC107673387,LOC107595025,LOC107744422,LOC107592323 other upstream 609668 10064217 ~ 10139733 (+)
si:ch211-102c2.4 NA other upstream 950043 9796381 ~ 9799358 (+)
man1b1b man1b1b,man1b1,LOC107709694,LOC107681241,LOC107560236,LOC107757969,LOC107690671,LOC107587425 other upstream 1877883 8864202 ~ 8871518 (+)
snx19a snx19a,LOC107597619,LOC107681657 other upstream 2443955 8289720 ~ 8305446 (+)
senp3a senp3a,LOC107744451,LOC107687680,LOC107599939,LOC107672741,LOC107592295,LOC107726393 other downstream 172559 10926823 ~ 10933753 (+)
map7d2a LOC107687666,LOC107592282,LOC107599951,LOC107754729,LOC107726367,LOC107672739 other downstream 292215 11046479 ~ 11064446 (+)
LOC122346180 LOC107597222,LOC107680408,LOC107732624,LOC107592391,LOC107732598,LOC107687664,LOC107747817,LOC107687696 other downstream 381959 11136223 ~ 11150225 (+)
gria3a gria3a,LOC107597231,LOC107672342,LOC107732609,LOC107680378,LOC107733225,LOC107592272 other downstream 512378 11266642 ~ 11303431 (+)
glra4b glra4b,LOC107741187,LOC107565418,LOC107680382,LOC108442052,LOC108259905 other downstream 884252 11638516 ~ 11652683 (+)

Expression


Co-expression Network