atp6v0a2b (atp6v0a2b,atp6v0a2,LOC107687687,LOC107726380,LOC107744440,LOC107672728)


Basic Information

Item Value
gene id atp6v0a2b
gene name atp6v0a2b,atp6v0a2,LOC107687687,LOC107726380,LOC107744440,LOC107672728
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 10738969 ~ 10749242 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238727.1
GTCTTTACTCTGACGGACCAAGAAGTTTTGGTTGCTGGAAAGGTTCGTGTTCGGAAGAGACAGGACGAGAAAAGCGCAAATGACTAACAAGCGCTGTTAAACATTACGCGAATGTCTCTAAATTTCTGACAGGGGTATGAACTCGCAGATTATTAAAAGAGAGGCCAAGCACCTTCGACAGTAGCTGTCTAGCTCGCTGCTATTTGATACGAGGACAGCGTAAATTGCTGAGGGCACTCGCGCTTCCTCAGGCTCGGTTCTGTGGGACTTCAACCGAACTTTAACCCGGGATGGGCGACCCAGCGGTACTGGAGATTTGGACTGGATCAGAATAACATCTAACATCGGAGTTTTCGGTGCTCAGATGTGGCTGCTGGGACTGGAGACGGGAGACGTGTCACTGATAAAGCGGCTGGAGTTAAGAGCCACGGCGCAGACGTCCGTCCATTCAGCCCGGTCCGCCCCACAGGGCAGTCCATCCAGCCCCAAACCAGGACCTGTAGGATTTTATTCACCCTAAACTTCACCGCCCGGTGAATGTAAGACTATTTAACCGGAAAGACGCGTTTCGTCAGAATGGGTACGTTGTTTCGTAGTGAGGAGATGTGTCTGGCCCAGCTCTTTCTGCAGTCCGGATCCGCTTATGACTGCATCAGTGAACTCGGCGAACTCGGGCTGGCGGAGTTCAGAGACCTTAACCCTAGTGTGAACTCTTTTCAGCGGAAGTTTGTCAATGAAATCAAGAGATGTGAAGAGATGGAGAGGAttctggGATATCTTCTGAGggaaattaaaaaagaagacaTCACACTGCCAGAAGGGGAGGTGAACCCAGCTGCACCATTACCCAAACATGTGATGGTCATAATGGAGCAGCTTCAGAGACTGGAACTGGAGCTGAGTGAGGTCACCAGAAACAAGGAGAAACTCCAGAAGAATCTTCTGGAACTGACtgagtacacacacatgctgcgCATCACACGCAACTTCGTGCACCGCAGTGCCGAGAGGGAGCCATCACAGGTCCAGTATGAAGAGTTTCCTTTCCTAGAGAAAGAACCCATGATGGACTACACCAGCATGCAGAGGCTTGGAGCCAAACTTGGGTTCATTTCTGGGCTTATTCAGAGCGTAAAAATCGAGGCGTTTGAGCGCATGCTCTGGAGAGTGTGTAAGGGCTACACCATCCTCAGCTACTCGGAGGTAGACGGCCTTCTCGAGGATCCAGATACGGGGGAGCCAACCAGGAGTGTGGTGTTCCTCATCTCTTACTGAGATCAGATTGGacagaaagttaaaaagattTGTGACTGCTACCACTGTCATCTGTACCCATACCCCAACAGTAATGAGGAGAGGACAGATGTGGTGGAGGCTCTCCACACACGCATTCAGGACTTGCACACGGTTCTTCACCGGACTGAGGATTACCTGAGGCAGGTGTTGATCAAGGCCTCAGAGTCTGTCTACGTTTGGGTGATCCAGGTTAAGAAAATGAAGGCCATATATCACATCCTTAACCTCTGCAGTTTTGATGTCACAAACAAGTGCCTCATTGCGGAGGTGTGGTGTCCCGTAAATGATCTGCCCGCGCTCCGGAGAGCGCTAGAGGATGGATCGaggAAGAGTGGAGCCACAGTTCCCTCATTTGTCAATCGTATCCCAAGCAATGACACTCCACCTACACTCATACGCACCAACAAGTTTACCTCAGGCTTTCAGAATATAGTTGATTCTCACGGCGTAAGCAGCTACAGAGAGGTCAACCCAGCTCCATATACAATCATTACCTTTCCcttcctgtttgctgtgatgtTTGGGGACCTCGGGCACGGCATCATCATGGCGCTGTTTGCTCTGTGGATGGTTCTCTATGAGAATGACCGCAAACTGAAGAAAACCAGAAACGAGatctggAACATTTTTTTCGAGGGTCGTTACATCATCCTGTTGATGGGTATATTTTCAGTCTACACTGGATTAATATACAATGACTGCTTCTCTAAATCACTCAACCTGTTTGGCTGGTGGAACGTCAGCGCTATGTTTGTGCCTGGAACTCTCCGCTCAAATAGCTTCCTTGCACTGGATCCAAACGTCACAGGAGTCTTTAAAGGGGCCTATCCTCTGGGCATTGACCCGATCTGGAACCTGGCGTCCAACCGTCTCACCTTCCTGAACTCCTATAAGATGAAGATGTCCGTGATCATAGGAATAATCCACATGACGTTTGGAGTCGTGCTTGGAGTTTTTAATCACCTGCACTTCAGACGGACATTTAATCTGTACCTGATATTTATTCCTGAGCTGCTCTTCCTGCTCTGCCTCTTCGGCTACCTGGTCTTCATGATCATTTATAAGTGGCTGTTTTTCACAGTCAGAGACTCTCAGACAGCTCCCAGCATCCTCATTCACTTTATCAACATGTTCCTGATGCAGGGGGACTCCGGTCAGCCCCTCTACCCAGGACAGGCCGGGTTTCAGGTGTTCCTGGTGATTGTGGCTGTGCTCTCAGTGCCTGTGTTACTCTTGGGCAAACCTCTCTACCTCTACTGGCAGCACAAGGGCAGAGACCGCCTGAGCATGTACCGGGGTTATCAGCGTGTACGGCGGAGCAGTGAGGAAGAGCTCTCTCTCATGCATGCTCATGATATGGAGGAGGGCACCAGTCTGGACAGCCACTCCTCCAGctctgacagccaatcagaggagTTTGATTTTGCTGATGTCCTCCTCCATCAGTCCATACACACTATAGAGTACTGCCTGGGCTGCATCTCTAACACTGCGTCTTACCTCCGCCTGTGGGCTCTCAGCCTGGCACATGCCCAGCTCTCTGAAGTGTTGTGGGCCATGGTGATGCGGGTCGGCCTGCGAGTGGACACCAGTGTGGGCATTGTGTTCCTGGTGCCTGTTTTTGGTCTGTTTGCTGTCCTCACCGTGTCCATCCTGCTGGTGATGGAGGGACTTTCAGCCTTCCTTCACGCTCTCAGACTCCACTGggTGGAGTTCCAGAATAAGTTCTATAGCGGCGCTGGCGTCAAGTTTATACCGTTTGCCTTCTCTCTCTTGCACACCAGCTTTGAAAACGAGGGGTTATTGTGATCTGTCGCGCTAAACACCAGGCCAGAGCGGATCTGTGAGAttcattttaacagatttaCACATTGCACTACATGCCAAAGTGCTCCAACCAAATACTCTTTATGTGGAGATACCAGATCAGCATTGAAAATACGTAAAACACTCTGAGATAAAGCAACAGCTCTGGACTGTAAATAGGA

Function

symbol description
atp6v0a2b Predicted to enable ATPase binding activity. Predicted to be involved in vacuolar acidification. Predicted to act upstream of or within proton transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of vacuolar proton-transporting V-type ATPase complex. Predicted to be active in plasma membrane. Human ortholog(s) of this gene implicated in autosomal recessive cutis laxa type IIA and wrinkly skin syndrome. Orthologous to human ATP6V0A2 (ATPase H+ transporting V0 subunit a2).
atp6v0a2 Predicted to enable ATPase binding activity. Involved in cellular iron ion homeostasis and cellular response to increased oxygen levels. Located in lysosomal membrane. Implicated in autosomal recessive cutis laxa type IIA and wrinkly skin syndrome.

NR:

description
PREDICTED: V-type proton ATPase 116 kDa subunit a isoform 2

GO:

id name namespace
GO:0000220 vacuolar proton-transporting V-type ATPase, V0 domain cellular_component
GO:0015078 proton transmembrane transporter activity molecular_function

KEGG:

id description
K02154 ATPeV0A, ATP6N; V-type H+-transporting ATPase subunit a

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238727.1 True 3284 mRNA 0.50 23 10738969 10749242

Neighbor

gene id symbol gene type direction distance location
rhbdd3 rhbdd3,LOC107744491,LOC107673375,LOC107599928,LOC107592310,LOC107730717,LOC107672772 coding downstream 127427 10609022 ~ 10611542 (-)
mrpl41 LOC107744490,LOC107730714,LOC107672724,LOC107592314,LOC107673372,LOC107599924 coding downstream 205379 10531654 ~ 10533590 (-)
paxx zgc:193538,LOC107599923,LOC107673439,LOC107592313,LOC107730722,LOC107672790 coding downstream 211931 10524885 ~ 10527038 (-)
LOC122345081 fut7,LOC107744472,LOC107599961,LOC107683322 coding downstream 273581 10463352 ~ 10465388 (-)
carnmt1 carnmt1,LOC107672718,LOC107730713,LOC107599972,LOC107673371,LOC107744489 coding downstream 279757 10455728 ~ 10459212 (-)
dgcr8 dgcr8,LOC107592303,LOC107726381,LOC107672729,LOC107687688,LOC107744441 coding upstream 4159 10753401 ~ 10761225 (-)
ctsll LOC107744447,LOC107599936,LOC107726378,LOC107687684,LOC107592300,LOC107672789 coding upstream 137910 10887152 ~ 10889785 (-)
LOC122344793 NA coding upstream 141600 10890842 ~ 10893594 (-)
zdhhc23a LOC107744494,LOC107599976,LOC107687708,LOC107592365,LOC107672710 coding upstream 144910 10894152 ~ 10900274 (-)
atp6v1aa atp6v1a,atp6v1aa,LOC107672757,LOC107592296,LOC107599937,LOC107687683 coding upstream 159656 10908898 ~ 10918493 (-)
G35154 ap1b1,LOC107730709,LOC107672709,LOC107599930 non-coding downstream 66354 10666774 ~ 10672615 (-)
G35168 gas2l1,LOC107599929,LOC107744437,LOC107673400,LOC107730708,LOC107592306,LOC107672792 non-coding downstream 91826 10642436 ~ 10647143 (-)
G35152 NA non-coding downstream 119547 10614748 ~ 10619422 (-)
G35142 NA non-coding downstream 221627 10516671 ~ 10517342 (-)
G35139 abca2,LOC107672707,LOC107730718 non-coding downstream 225684 10512930 ~ 10513285 (-)
G35188 trmt2a,LOC107687689,LOC107672731 non-coding upstream 758 10750000 ~ 10750605 (-)
G35189 NA non-coding upstream 2093 10751335 ~ 10751904 (-)
G35194 NA non-coding upstream 17619 10766861 ~ 10790372 (-)
G35201 NA non-coding upstream 83616 10832858 ~ 10833595 (-)
G35203 NA non-coding upstream 88763 10838005 ~ 10838297 (-)
G35122 NA other downstream 277260 10461208 ~ 10461709 (-)
si:dkey-96l17.6 si:dkey-96l17.6,LOC107672751,LOC107738297,LOC107592400,LOC107744487,LOC108434467,LOC105902719 other downstream 403626 10324959 ~ 10335343 (-)
G34789 vps37b,LOC107594993,LOC107673398,LOC107656485,LOC107587312,LOC107709855,LOC107721558 other downstream 1336346 9337828 ~ 9402623 (-)
vamp5 LOC107594989,LOC107681225 other downstream 1518441 9215498 ~ 9220528 (-)
G34580 LOC107681240,LOC107709820,LOC107560234,LOC107715750 other downstream 1808916 8929470 ~ 8930053 (-)
G35371 znf703,LOC107599934,LOC107672788,LOC107744445,LOC107687685,LOC107726392,LOC107592299 other upstream 119122 10868364 ~ 10874064 (-)
G35384 NA other upstream 174685 10923927 ~ 10926163 (-)
slc25a15b slc25a15b,LOC107744499,LOC107687678,LOC107599942,LOC107726376,LOC107672737 other upstream 211069 10960311 ~ 10969118 (-)
hmgn7 hmgn7,LOC107672554,LOC107756557,LOC107680402,LOC107565427,LOC107748629,LOC107597243,LOC108260037,LOC108442050 other upstream 670713 11419955 ~ 11467122 (-)
G35554 LOC100304549,LOC100219516,LOC106514001,LOC103353280 other upstream 834538 11583780 ~ 11652627 (-)

Expression


Co-expression Network