arhgef9a (arhgef9a,arhgef9,LOC107741200,LOC107557118,LOC107597261)


Basic Information

Item Value
gene id arhgef9a
gene name arhgef9a,arhgef9,LOC107741200,LOC107557118,LOC107597261
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 11876965 ~ 11901271 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238754.1
agagagagagagagagagagagagagagacgcagaCTCCCACCTCGCCGTGAGAACAGAACCGCGTCTAACCGGACCTACGTTTCTCTTCCATACGCCTCGCGTTGCTCACGGGGCGCGGATACAGGGTTGCAGCTGGCGTCGGGGGCTCGAACCTGCGGAAAGGACACGGATCCAGGACCGGGACTGACCCTGAGGATGATGAAGTTGGTCAGCGGGGGCTCTGTAGTGAATGCCGAGGCAGTATGGGACCATGTGACCATGGCTGACCGAGAGCTGGCCTTCAAGGCCGGCGATGTCATCAAGGTGTTGGACGCCTCGAATAAGGACTGGTGGTGGGGTCAAATCGACGAGGAGGAGGGCTGGTTTCCCGCCAGCTTCGTCAGGGTGGAGTCCCACCCCCCTCAAACCAAACAGCTTTTTTATATCAACCCTGTCGCTGCATCACGCCTCACAAACGCCACGGCTAAGTTATGGGTAAATCAGGAGGAAAACACCGTGGTCGAGGCTGCCGAAAGCTCCAGCGAGGTGCAGAACGGTCATGCGGAGGCCAGCCCGAACCCCAGCACCGACTGCCTGTGTCTGGGCCAGCCCACTCAGAACCGGGACCAAATGAGGGCTAATGTCATCAATGAGATCATGAGCACAGAACGACATTACATCAAACACCTGAAGGACATCTGTGAGGGGTATCTCCGTCAGTGTAAAAAGAGGAGAGACATGTTTAACGACGATCAGCTGAAAGTGATCTTTGGAAACATCGAAGACATTTACAGATTCCAGTTGAGCTTTGTCAGAGACCTGGAGAAACAGTTTAACACGGAAGAACCTCACCTCAGCGAGATCGGACCTTGCTTTTTGGAACATcaagaTGGATTCTGGATCTACTCGGAATACTGTAACAACCACGTTGACGCCTGCATGGAGCTCACACGTCTCATGCGAGACGCACGATACCAGCACTTCTTTGAAGCTTGCCGATTGGTTCAGCAGATGATCGACATCGCCATTGATGGCTACCTGCTCACACCGGTCCAGAAAATCTGCAAATACCCTCTACAGCTGGCAGAGTTACTCAAATACACAGTACAAGAACACAGTGATTATCGGTACGTAGCTGCGGCGCTAGCTGTAATGAGAAATGTCACTCAGCAAATCAACGAACGCAAACGAAGGCTTGAGAACATTGACAAAATTGCCCAATGGCAGGCCTCTGTACTGGATTGGGAGGGTGAGGATATTCTGGACAGGAGCTCAGAGCTTGTGTACACTGGGGAGATGTCCTGGATATATCAACCATACGGGCGCAGCCAAACCAGAATCTTCTTCCTATTCGATCATCAGATGGTTCTCTGCAAGAAGGATCTCATTCGCCGTGATATTCTCTACTATAAGGGTCGGATTGACATGGATCGATACGAGGTCATTGATGCAATCGATGGTAGAGATGATGATTTTAACGTTAGTGTGAAGAACGCCTTCAAACTGGCCAACAGAGACACAGACGAGATCCATCTGTTCCTGCCCAAAAAGCTGGAGGAGAAAATCCGCTGGCTTCGGGCGTTTCAAGAGGAAAGAAAGATGGTTCAGGAAGATGAGAAGATTGGCTTTGAAATCTCTGAGTATCAGAAAAGACAAGCTGCCTTGACCGTCAGAAGAGTTACCAAACAGAAAGGTGTGGGCCGGTCGGGCCCCCCAGCGTACCCCCCTCCACTGGACCCCATGAACCCCGGGCAGTACCTTCTCCCCGACGGATACGGGCAAGCAGACGGATATGAATATGAGCCCAAACGCAGCACATCTCCCTTCTGGCAGAACTTCAGTCGGTTAGCTCCCTTTAAAAAATAGAACACACATCCACCAGAGGTCGGATAAACACCAGCCTCTGTTTTCTCGGAAAAGCACTATTCTACTTAAGATACATCAGCGGGACTTGAGGAGGACcgacacacgcatacacatatacaaactACAGGAGAGAGGACGGACCTCGCTTTACTGGGGTTTACCAGGCATATTTCTTTTACTGGGGTTACGGGGACACCTCGCTGGGCTGGCTGCACTGAATACTGTACACGACATGTCGTaattcacagaagaaaaaaaaaaaaaatcacgcgAACGCACACACAGAACATACATTTTATCCCTCAGCACTCTCTTTGTAGAGaggttttaaatgatgaaatatagTTTCTTCTTCTCTATACGAATCGACGGAAAGCGAATTTTCACCGTTTGAAGCACTAAACCAATGTAATGACTCTTGCTCTCTAGCGCCGCCCTGGTGTTCCTCCGTGCACTGTGACTATTCGGGGCATTCTCTCTCACccaatctctctttttctctctcgaTCGCATTCTCCACATTATCACGTGTTTTTTCCAACAGTTTCAAGTCTGGTCaaagctgaaaatatttttgttttcctggaCAATATCTCCTTGAATGGAACCTGCTGCACTCTTTAGTTCGTTTTGCATGTGATTCGGTTCATTGcaggtatttttatttgtgtaactCTATTCCTACGGGTCTCAAAGAACAGTGGATCACGGTCTGCGAATTTGTCACACAAGTTGCTTTCACGGTATACTGGAAATACGGATATTGGAACAGCTTTGACATTCAGTGAAACCTACAGTCGTTCGAGCTAAAAGTCAGTTTTGGTTTGCTGGAGCATTTAGGCACCCCGATGAAAATACAGACCAGAGAAACCTGAAGGAGGAACTGTTTTGCTCTGAACAGTGGACCTCTGTAGCACGTTTACGTCAGAGCCTTGTTTATCCTGAGGTCTCGGTCTTTGCTTCACCATTGTTTCCTCTCTCCCATCATAAGTGCAATCCGACAGAAGACCGgaaacctacaaaaaaaaaaaaaaaaaaaagtaataatgccACTTCTGAGCCCTGTCTTGATTTTATGGGGAATGATACCCGGACCAGGACGACTTTAATCCTGCTGATCAACCTCGTAATGACGTGCCAATTCATCTCTAACATGCCAAAATAGTCTGGTTGCCAAATTTTCCTCTAACAGGTGCATTGGCATGTGCGAATGCCAACCCCATGAGCTGGTACCCCGCCATGTGACTTCTCAGGCGAAAATTAAGTCAGTGAAATTTGGTTATCGCTGCTAGGATTAGCATGACATAGcgtttcagtttttaattttttcttttttttggggttgtttttggttctctctctctatatatatacagtatatatatttatatttatttttttcccaaattaaAGGGACTTGtgcaaaatttaatttatggTATATTCGCGTTTTGTCTGATAACTTTCAAAGGATAGTATTTAGTCCAATCACAATATTTAAAGTATtgctataaaacattatttattctattatagtgtgattttctttttttccatgttgATCCTCTTTCTATATTTTAGAGCTTCTGCTGGAGTGTTAAAGACCCTTTTAGGgcctaaaaaaatgtaagaggACAGTATGGAAGAAATATGTCACACATGTGTACTAAGTGCCACATGAAACTATTATTATGTTACAAAGGAAAAtatcagtttaatatttttgattcGGTGATCTGATTGAAATaacattatatcattatttcataataaactTCATTATGGAGAAAACAGA
>XM_043238755.1
gagagagagagagagagagagagagagacgcagaCTCCCACCTCGCCGTGAGAACAGAACCGCGTCTAACCGGACCTACGTTTCTCTTCCATACGCCTCGCGTTGCTCACGGGGCGCGGATACAGGGTTGCAGCTGGCGTCGGGGGCTCGAACCTGCGGAAAGGACACGGATCCAGGACCGGGACTGACCCTGAGGATGATGAAGTTGGTCAGCGGGGGCTCTGTAGTGAATGCCGAGGCAGTATGGGACCATGTGACCATGGCTGACCGAGAGCTGGCCTTCAAGGCCGGCGATGTCATCAAGGTGTTGGACGCCTCGAATAAGGACTGGTGGTGGGGTCAAATCGACGAGGAGGAGGGCTGGTTTCCCGCCAGCTTCGTCAGGTTATGGGTAAATCAGGAGGAAAACACCGTGGTCGAGGCTGCCGAAAGCTCCAGCGAGGTGCAGAACGGTCATGCGGAGGCCAGCCCGAACCCCAGCACCGACTGCCTGTGTCTGGGCCAGCCCACTCAGAACCGGGACCAAATGAGGGCTAATGTCATCAATGAGATCATGAGCACAGAACGACATTACATCAAACACCTGAAGGACATCTGTGAGGGGTATCTCCGTCAGTGTAAAAAGAGGAGAGACATGTTTAACGACGATCAGCTGAAAGTGATCTTTGGAAACATCGAAGACATTTACAGATTCCAGTTGAGCTTTGTCAGAGACCTGGAGAAACAGTTTAACACGGAAGAACCTCACCTCAGCGAGATCGGACCTTGCTTTTTGGAACATcaagaTGGATTCTGGATCTACTCGGAATACTGTAACAACCACGTTGACGCCTGCATGGAGCTCACACGTCTCATGCGAGACGCACGATACCAGCACTTCTTTGAAGCTTGCCGATTGGTTCAGCAGATGATCGACATCGCCATTGATGGCTACCTGCTCACACCGGTCCAGAAAATCTGCAAATACCCTCTACAGCTGGCAGAGTTACTCAAATACACAGTACAAGAACACAGTGATTATCGGTACGTAGCTGCGGCGCTAGCTGTAATGAGAAATGTCACTCAGCAAATCAACGAACGCAAACGAAGGCTTGAGAACATTGACAAAATTGCCCAATGGCAGGCCTCTGTACTGGATTGGGAGGGTGAGGATATTCTGGACAGGAGCTCAGAGCTTGTGTACACTGGGGAGATGTCCTGGATATATCAACCATACGGGCGCAGCCAAACCAGAATCTTCTTCCTATTCGATCATCAGATGGTTCTCTGCAAGAAGGATCTCATTCGCCGTGATATTCTCTACTATAAGGGTCGGATTGACATGGATCGATACGAGGTCATTGATGCAATCGATGGTAGAGATGATGATTTTAACGTTAGTGTGAAGAACGCCTTCAAACTGGCCAACAGAGACACAGACGAGATCCATCTGTTCCTGCCCAAAAAGCTGGAGGAGAAAATCCGCTGGCTTCGGGCGTTTCAAGAGGAAAGAAAGATGGTTCAGGAAGATGAGAAGATTGGCTTTGAAATCTCTGAGTATCAGAAAAGACAAGCTGCCTTGACCGTCAGAAGAGTTACCAAACAGAAAGGTGTGGGCCGGTCGGGCCCCCCAGCGTACCCCCCTCCACTGGACCCCATGAACCCCGGGCAGTACCTTCTCCCCGACGGATACGGGCAAGCAGACGGATATGAATATGAGCCCAAACGCAGCACATCTCCCTTCTGGCAGAACTTCAGTCGGTTAGCTCCCTTTAAAAAATAGAACACACATCCACCAGAGGTCGGATAAACACCAGCCTCTGTTTTCTCGGAAAAGCACTATTCTACTTAAGATACATCAGCGGGACTTGAGGAGGACcgacacacgcatacacatatacaaactACAGGAGAGAGGACGGACCTCGCTTTACTGGGGTTTACCAGGCATATTTCTTTTACTGGGGTTACGGGGACACCTCGCTGGGCTGGCTGCACTGAATACTGTACACGACATGTCGTaattcacagaagaaaaaaaaaaaaaatcacgcgAACGCACACACAGAACATACATTTTATCCCTCAGCACTCTCTTTGTAGAGaggttttaaatgatgaaatatagTTTCTTCTTCTCTATACGAATCGACGGAAAGCGAATTTTCACCGTTTGAAGCACTAAACCAATGTAATGACTCTTGCTCTCTAGCGCCGCCCTGGTGTTCCTCCGTGCACTGTGACTATTCGGGGCATTCTCTCTCACccaatctctctttttctctctcgaTCGCATTCTCCACATTATCACGTGTTTTTTCCAACAGTTTCAAGTCTGGTCaaagctgaaaatatttttgttttcctggaCAATATCTCCTTGAATGGAACCTGCTGCACTCTTTAGTTCGTTTTGCATGTGATTCGGTTCATTGcaggtatttttatttgtgtaactCTATTCCTACGGGTCTCAAAGAACAGTGGATCACGGTCTGCGAATTTGTCACACAAGTTGCTTTCACGGTATACTGGAAATACGGATATTGGAACAGCTTTGACATTCAGTGAAACCTACAGTCGTTCGAGCTAAAAGTCAGTTTTGGTTTGCTGGAGCATTTAGGCACCCCGATGAAAATACAGACCAGAGAAACCTGAAGGAGGAACTGTTTTGCTCTGAACAGTGGACCTCTGTAGCACGTTTACGTCAGAGCCTTGTTTATCCTGAGGTCTCGGTCTTTGCTTCACCATTGTTTCCTCTCTCCCATCATAAGTGCAATCCGACAGAAGACCGgaaacctacaaaaaaaaaaaaaaaaaaaagtaataatgccACTTCTGAGCCCTGTCTTGATTTTATGGGGAATGATACCCGGACCAGGACGACTTTAATCCTGCTGATCAACCTCGTAATGACGTGCCAATTCATCTCTAACATGCCAAAATAGTCTGGTTGCCAAATTTTCCTCTAACAGGTGCATTGGCATGTGCGAATGCCAACCCCATGAGCTGGTACCCCGCCATGTGACTTCTCAGGCGAAAATTAAGTCAGTGAAATTTGGTTATCGCTGCTAGGATTAGCATGACATAGcgtttcagtttttaattttttcttttttttggggttgtttttggttctctctctctatatatatacagtatatatatttatatttatttttttcccaaattaaAGGGACTTGtgcaaaatttaatttatggTATATTCGCGTTTTGTCTGATAACTTTCAAAGGATAGTATTTAGTCCAATCACAATATTTAAAGTATtgctataaaacattatttattctattatagtgtgattttctttttttccatgttgATCCTCTTTCTATATTTTAGAGCTTCTGCTGGAGTGTTAAAGACCCTTTTAGGgcctaaaaaaatgtaagaggACAGTATGGAAGAAATATGTCACACATGTGTACTAAGTGCCACATGAAACTATTATTATGTTACAAAGGAAAAtatcagtttaatatttttgattcGGTGATCTGATTGAAATaacattatatcattatttcataataaactTCATTATGGAGAAAACAGA

Function

symbol description
arhgef9a Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to be located in cytoplasm and postsynaptic density. Is expressed in retinal ganglion cell layer. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 8. Orthologous to human ARHGEF9 (Cdc42 guanine nucleotide exchange factor 9).
arhgef9 Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to be involved in regulation of postsynaptic specialization assembly. Located in cytosol. Implicated in developmental and epileptic encephalopathy 8.

NR:

description
PREDICTED: rho guanine nucleotide exchange factor 9-like isoform X3

GO: NA

KEGG:

id description
K20686 ARHGEF9; Rho guanine nucleotide exchange factor 9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238754.1 True 3642 mRNA 0.46 11 11876965 11901271
XM_043238755.1 False 3557 mRNA 0.45 10 11876966 11901271

Neighbor

gene id symbol gene type direction distance location
amer1 LOC107597260,LOC107746241,LOC107672756,LOC107741198,LOC107663227,LOC107557115 coding upstream 5927 11865198 ~ 11871038 (+)
asb12a asb12a,LOC107746240,LOC107672747,LOC107557116,LOC107741197,LOC107663228 coding upstream 12523 11861044 ~ 11864442 (+)
mtmr8 LOC107672736,LOC107746239,LOC107597259,LOC107741196,LOC107557114,LOC107663233 coding upstream 15993 11852291 ~ 11860972 (+)
zc4h2 zc4h2,LOC107663226,LOC107557113,LOC107597258,LOC107672730,LOC107746238 coding upstream 31696 11840476 ~ 11845269 (+)
las1l LOC107672706,LOC107746236,LOC107663224,LOC107741192,LOC107557109 coding upstream 53354 11817352 ~ 11823611 (+)
tenm1 tenm1,LOC107713050,LOC107557119,LOC107597323,LOC107741271 coding downstream 136177 12037448 ~ 12164936 (+)
LOC122344656 cds2,LOC107654641,LOC107597267,LOC107741205,LOC107663217,LOC107557099 coding downstream 336463 12237734 ~ 12245428 (+)
LOC122345271 LOC107672980,LOC107743347,LOC107597351,LOC107741294,LOC107663230,LOC107557104 coding downstream 363999 12265270 ~ 12271264 (+)
LOC122345277 sh2d1aa,LOC107713049,LOC107741293,LOC107663232,LOC107557102 coding downstream 394984 12296255 ~ 12300181 (+)
si:dkey-13n15.2 si:dkey-13n15.2,LOC107743336,LOC107595973,LOC107654639,LOC107575942 coding downstream 533065 12434336 ~ 12457053 (+)
G35629 NA non-coding upstream 101473 11773986 ~ 11775492 (+)
G35606 NA non-coding upstream 148364 11728276 ~ 11728601 (+)
G35585 NA non-coding upstream 169192 11707531 ~ 11707773 (+)
G35584 NA non-coding upstream 169967 11706659 ~ 11706998 (+)
G35350 NA non-coding upstream 345721 11530518 ~ 11531244 (+)
LOC122345698 NA non-coding downstream 42166 11943437 ~ 11986820 (+)
G35733 LOC107557098,LOC107663216,LOC107597264,LOC107672815 non-coding downstream 272012 12173283 ~ 12182024 (+)
LOC122345282 LOC107597264,LOC107672815 non-coding downstream 376859 12278130 ~ 12287378 (+)
LOC122345281 NA non-coding downstream 383174 12284445 ~ 12285122 (+)
G35756 LOC107557121,LOC107597264,LOC107672815,LOC107663216,LOC107557098 non-coding downstream 455167 12356438 ~ 12358798 (+)
glra4b glra4b,LOC107741187,LOC107565418,LOC107680382,LOC108442052,LOC108259905 other upstream 224282 11638516 ~ 11652683 (+)
gria3a gria3a,LOC107597231,LOC107672342,LOC107732609,LOC107680378,LOC107733225,LOC107592272 other upstream 573534 11266642 ~ 11303431 (+)
LOC122346180 LOC107597222,LOC107680408,LOC107732624,LOC107592391,LOC107732598,LOC107687664,LOC107747817,LOC107687696 other upstream 726740 11136223 ~ 11150225 (+)
map7d2a LOC107687666,LOC107592282,LOC107599951,LOC107754729,LOC107726367,LOC107672739 other upstream 812519 11046479 ~ 11064446 (+)
senp3a senp3a,LOC107744451,LOC107687680,LOC107599939,LOC107672741,LOC107592295,LOC107726393 other upstream 943212 10926823 ~ 10933753 (+)
smarca1 smarca1,LOC107597262,LOC107672796,LOC107741199,LOC107663213,LOC103034185,LOC105028962,LOC105893234,LOC106603320 other downstream 22957 11924228 ~ 11943110 (+)
G35720 LOC107654642,LOC107597266,LOC107743332,LOC107741203,LOC107557123,LOC107663229 other downstream 347867 12249138 ~ 12255672 (+)
si:ch211-225b11.4 si:ch211-225b11.4,LOC107743340,LOC107597327,LOC107654601,LOC107580265,LOC107735986 other downstream 612742 12514013 ~ 12528790 (+)
iscu si:ch211-191d15.2,iscu,LOC107597282,LOC104937683 other downstream 802081 12703352 ~ 12705245 (+)
LOC122346073 LOC107654625,LOC107597279,LOC107741224,LOC107696048,LOC107727161 other downstream 902518 12803789 ~ 12807351 (+)

Expression


Co-expression Network