riok2 (riok2,LOC107746813,LOC107681048,LOC107676637)


Basic Information

Item Value
gene id riok2
gene name riok2,LOC107746813,LOC107681048,LOC107676637
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 15530074 ~ 15534492 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238806.1
TCACACTGCGCACTTCCGGTTTGAACATGTGGAATGGGGATGGCAGGTTGAACTAGTCACgcattacaaaaaacatttgggggaaaaaaattagcTTACTAATTTTCAGAAGATTTCTACGTGTTTGCCACCATGGGCAAATTAAACGTTGTTATCTTGAGGTATCTGTCCAGGGAGGATTTTAGAGTCCTCACAGCGGTGGAAATGGGCATGAAGAACCACGAGATCGTTCCAGTAAGTCTGGTCGCGTCTATTGCCAGCCTCAAACATGGAGGGTGTAACAAGGTTTTGCGGGAGCTGGTCAAACACAAACTACTGGCCTACGAACgcagcaaaaCTGTGCAGGGCTATCGGTTGAATTACGGCGGCTATGATTACCTGGCACTGAAGACATTTTCATCCAGAGATATTATTTTGTCAGTAGGAAACCAGATGGGAGTCGGCAAAGAGTCAGATATTTACATTGTCGCAAATGCTGAGGGGGAGCAGTTTGCTCTGAAACTTCACAGACTGGGTCGGACATCCTTCAGGAACTTAAAGAACAAGAGAGATTACCACAAGCACAGACACAAGATGTCGTGGCTGTACCTGTCCCGGCTTTCCGCCATGAAAGAGTTTGCATACATGAAGGCATTATATGATCGAGGGTTTCCTGTTCCAAAGCCAGTAGACTACAACAGACATGCAGTAGTTATGGAGCTTATTAATGGTTACCCACTGTGTCAGGTTCGAGAAATTCAAGACCCTGCTGCATTGTACAGTGAAATCATGGAGCTAATAGTCAAACTTGCCAACCATGGGCTTATCCATGGTGACTTCAATGAATTTAACCTCATGCTTGATGACAACGACCACGTCACAATGATCGACTTCCCTCAGATGGTCTCCACCTCACACACAAATGCAGAATGGTACTTTGATCGAGATGTTAAGTGTGTTCGAGATTTCTTCTTGAAAAGATACAACTATGAAAGCGAACTCTATCCAACATTCAAAGATATCAGAAGAGCCCACTCGCTCGATGTGGAGATCTCAGCTAGTGGCTACACCAAGGAGCTGCAGCAGGATGACCGTTTGCTCCACCCTGAAGGTCCAGAGGGTGAAGAACTCAGTGGAGATGAAGATGACATCTCGGAGTCGGTTGACGATACGCATCAGGCTGCCTCAGAAGACGTTATCAGCATAGAGGAGTATAAACAAGCCATGCTTGAACTGGAAGGGCTAAATATTAGTAAAGATACTCCAACAGAAGAGAACAAAACAGAGGAACCTAAAGGAGCTCAAGGTGAAGAGGAGCTTCCCTCAGAGGACATTCAAAAAGAAACTGTTTGCAACATTACCACAGATTTGGAGAGGGAAGAGGAGAATGAGGTGGAGGATGAGTGTCCTGATTTGGTTGACCTTTCTTCAGCCAACAAAGAGTTTAGGCCATTCAGAGACCAAGTGAGCCTTGAGAATGAGCACAGGAGGAGAACAACCAGTGAAATGAGCATTGGAAGTGTTGGCAGTTGTTCTACTATACCACCAGAGGTCATCAGGCAGAAAGTGAAGAGACAGCTCACGAAACAGCAGAAGGCTGCTCAGAGAAGACGTTTACAGAAGGGTGAAGCCAACCTGGTGACCAAGGAGAGGAGAGAAAATCAGAACAACATCAAGAGCAGTTTGGAGGGGGCTTACTTCTGGGGCTGAGGGTGGTCCTGAAATCTGTTGAGGACTTCTAACATTTTTCAGAGTTGCTTCTTTATCTATGGAAGTACTAATAAAAAACTTAATCCC

Function

symbol description
riok2 Predicted to enable protein kinase activity. Predicted to be involved in maturation of SSU-rRNA. Predicted to act upstream of or within protein phosphorylation and ribosome biogenesis. Predicted to be part of preribosome, small subunit precursor. Predicted to be active in cytosol and nucleus. Orthologous to human RIOK2 (RIO kinase 2).

NR:

description
serine/threonine-protein kinase RIO2

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K07179 RIOK2; RIO kinase 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238806.1 True 1776 mRNA 0.45 10 15530074 15534492

Neighbor

gene id symbol gene type direction distance location
epg5 epg5,LOC107746812,LOC107681055,LOC107676662,LOC107708644 coding downstream 728 15505966 ~ 15529346 (-)
dnajb5 dnajb5,LOC107746810,LOC107681063,LOC107708641 coding downstream 36404 15480180 ~ 15493670 (-)
akr1a1a akr1a1a,LOC107602015,LOC107708643,LOC107676648,LOC105901177,LOC108414433 coding downstream 53001 15472092 ~ 15477073 (-)
eef2l2 eef2l2,LOC107681082,LOC107746808,LOC107552597,LOC107676651,LOC108414462,LOC107708638,LOC108255789 coding downstream 72703 15451024 ~ 15457371 (-)
mtmr12 mtmr12,LOC107746804,LOC107552602,LOC107708634,LOC107602020 coding downstream 237192 15280214 ~ 15292882 (-)
atxn2 LOC107746814,LOC107680995,LOC107552590,LOC107708645,LOC107676658 coding upstream 202 15534694 ~ 15554686 (-)
si:dkey-65b12.6 LOC107746818,LOC107680961,LOC107552589 coding upstream 55392 15589884 ~ 15604332 (-)
LOC122345011 NA coding upstream 70945 15605437 ~ 15611094 (-)
LOC122345891 NA coding upstream 79975 15614467 ~ 15616462 (-)
ncor1 ncor1,LOC107676644,LOC107746860,LOC107553567,LOC107680951,LOC107552540 coding upstream 82109 15616601 ~ 15684436 (-)
G36811 NA non-coding downstream 360716 15169047 ~ 15169358 (-)
G36714 NA non-coding downstream 624453 14905385 ~ 14905621 (-)
G36708 NA non-coding downstream 649009 14880865 ~ 14881065 (-)
G36696 NA non-coding downstream 831121 14698736 ~ 14698953 (-)
G36631 NA non-coding downstream 877681 14652095 ~ 14652393 (-)
G36967 NA non-coding upstream 27230 15561722 ~ 15562078 (-)
G36968 NA non-coding upstream 27656 15562148 ~ 15562363 (-)
G36969 NA non-coding upstream 29606 15564098 ~ 15565262 (-)
G36986 NA non-coding upstream 179183 15713675 ~ 15713975 (-)
G37067 NA non-coding upstream 194711 15729203 ~ 15729893 (-)
npr3 LOC107681138,LOC107746807,LOC107552598,LOC107602007,LOC107708637,LOC107661273 other downstream 162661 15350016 ~ 15367413 (-)
zfr zfr,LOC107746805,LOC107681158,LOC107552600,LOC107602019 other downstream 221634 15293856 ~ 15308440 (-)
pdzd2 pdzd2,LOC107746802,LOC107681406,LOC107661237 other downstream 265129 15205951 ~ 15264945 (-)
LOC122345141 LOC107752369,LOC107661250,LOC107567461 other downstream 1227693 14292063 ~ 14302381 (-)
znhit1 znhit1,LOC107752359,LOC107661214,LOC106567874 other downstream 1247454 14279674 ~ 14282620 (-)
alkbh2 alkbh2,LOC107746816,LOC107552593,LOC107676640 other upstream 33527 15568019 ~ 15578967 (-)
cenpv cenpv,LOC107718355,LOC107676655,LOC107746825,LOC107680877,LOC107553589,LOC107552586 other upstream 169041 15703533 ~ 15709430 (-)
emc6 emc6,LOC107680863,LOC107746824,LOC107552584,LOC107553592,LOC107552561 other upstream 190535 15725027 ~ 15728108 (-)
fam222ba LOC107552581,LOC107746861,LOC107680853,LOC107676666,LOC107553569,LOC107680837,LOC107552580,LOC107746822,LOC107746829,LOC107680824,LOC107552579,LOC107676664,LOC107553594,LOC107718349 other upstream 208248 15742740 ~ 15808380 (-)
cxcl11.4 LOC107718357,LOC107746875,LOC107553578,LOC107676639,LOC107680777,LOC107552559,LOC107553571 other upstream 305834 15840326 ~ 15841678 (-)

Expression


Co-expression Network