mybbp1a (mybbp1a,LOC107658206,LOC107704885,LOC107594578,LOC107567654,LOC107750298)


Basic Information

Item Value
gene id mybbp1a
gene name mybbp1a,LOC107658206,LOC107704885,LOC107594578,LOC107567654,LOC107750298
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 287133 ~ 299381 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238853.1
CGGTCCCCACGTGTGCGCCACATTATCATGGTTGCTGTGATGCAGACAGACATGGGAGAGATCGAGGACAGCAGCGTGAAACCTAAAATCACCGATGCCAAAGGCATCCTCAAACAGAACCGACAATTCCTAGATTACTTCTGGGACATCGCGAAACCCGAGCGAGAAATCCGCCTTAAAGCGATAGAGGACTTAATTGAACACTTGAAGCAGAGCGAGAAGCCGGACGAGTTGAAGTACTCTCTGAAGAGACTGGTGTGCGGTCTGTCTCACGCGCGAGAAGACGCTCGCTCTGGATACAGCGTGGCGCTCGCTCAGCTGCTGAGCGTGTTTGAGGAGATCTCGCTGAAGTCCACGCTAGACAGCGTCAAGGCGCAGCACAACCTCCTGAAGGCCAGAAAGAAACTCTTGAGGAATGCAGCGTTTGGGAATTTCTTCGGGGTGCTCGCTCTGTCTCAGTCCACGCGTCTGCATAAAGAGCCGCAGATCATGCTGGAGTGTGTGCAGCTCCTGCAGACTCTCTCCCAATACAGAGAACACCTGAGAGACCTGCCCAGAAAAACCATGACTGACATCCTGTCAGAGACGTCGACGGAGGTGTTTAAAGAGGTGCTCCTGAGCGCTCTGCAGTCTGACCTGACCTCTGCCCTCAACACCCCCGAGCAGCTGGAGCTCCTCCTCGTGGCCATGCAGAAGTTCCCCTCGGTgctcaaagcaaaaaaactcaAGAAACTATTGGGAGCCACAGCAGTCATTACGAAAGAGAACATGCCAAAGCTTGTGGAAGTTTTAAAGACGGTCGCTCGCTCTGTGAAGAAGGAAAACATTCTGCCCCCGGTGGCATTTGACTTGTTACAGGCATCTCTGCGGGAGGACAACTTCGAGATGTTCTGGAATGAAGCCATTATTAAAGGGATGCTGTCAGAGATGCCTGGACCCACACATTATTTAAGTTTCCGGTTGCTGGGAGCGTCTCTGCCGCTGCTGTCAGTCCCTCAGCTTGAGTTTGTCCTGTCCAGTGATGTGATGAGATACTACGGTCAACACGTCCTGTCCGCACAGCTGGCAGAACGATACAAGTTTGCTCCAGAGATGGAGAAGTACTTGATTGAGTTCATGGAGGGCTGCTCTGACGCTGACAAACAGCACACCGTGGCTCTCGGCTTCACTCAGCTCACTAACCAGGGGTACCCCGTGATCCCGACCTCCTGGCAGCCTCTGGAGCACATGGGTCAGTCAGCGCTGGGGCAGTATGTGGAGTGGCTGATGGGGGCCTTCTGCAAGCCCCAGCTGGACAAGTGCATGGACTTCAGCACCCGCAGACAGATAGGAAACCAGGAGTCTGAAGTACAGAGTGACAGCTGTGTTGCCAGGTTTCGTAAATGGATCACTTCATGCCTCTCTTTCATTGTGGAGAAGCATAAGATTAAGAAAGAGGAGGAACTTGTCATGAAAATGGCTAGgtttatttttttccacgcCGCCTTTGATGTGAAGAAGCCCactccagaaattcctgagacGATGCAGGCTCTCTCAGTGCCCATAGATACACAAACACGAGCCGCCCTCTCTGCAGCCTTTTACGGTCTTCTGCAGGGCCTGAACTCAATGGCTGTTTTAGGTAATTCACCAGAGGCAGAAAATTTGAACTCCAGGAGGACTGTGGGTGTTAAAGCCGATGGAAGCATGTGGATCTACTGTGTGGTCCAGTACGCCAATATGCTCCTCAACCAGAGCAAACACGTCCAGAGCATTCAGACCCTCAGTCCAGAGCAGAGGCAGGGCTGGGAAAGTATGCTGGAGTCGGTGGAGGCCTTGAAGAAAAAAGCGAAGAAGTCTTCCTCTCCTGAACACATGGCGTTTCAGCAACTCTTTCTTCTCGTTGGGGTTCAGATGTTTAAGGCTCCAGCTGAAAGTTTGGAGCTGCTGAATGATTTGCGGACCTGCATGGAGAAAGCTCAGGCTAAGAAATCTAAAAAGAAAGCTAAGGGTAAGAGTTGTGACGAGGAGCCTCACTGGGTGGAGGTGGTGGTTGAGATCCTGCTGTCGCTCCTGTCTCAGCCCAGTCGTCTCGTTCGTAATGTGTGTAAAGCTGTGTTTAGCCGTATCTGTCCTCACCTCACCCAAGAAGCTCTCAGCTCCATCCTGAACgttCTGGACCCCAACAGGGATGAGGATGAAAGTGGAGTTATGGTGactgatgaaaacaaaaacgggaaaaaactaaaacacaaaaaggagGACGAGGAAGAGGATAATGAAGAGGAGGATGAAGAAGGCTCTGATTGCTCTTcatctgatgatgatgatgatgaggaggaggaggatgaagccATGGAGGATGGAGAAGAGGTGGATCAGAACTTCCGTTTGGATTTGATGAAGGTTCTGCAGGGTCAGAACGCTCTGGCCACTGAAGAGGATGGCAGTGATGAAGAGGAACTGGATGATGCAGCCATGATGAAGCTGGACGGAAGCCTGGCTGCTCTCTTCCTGGAGCAGAAGAAAAAGATCCAGGCCAAAAAAAACGAGAAGGACAGACTGCGCAAAGAAAAGGTCCTTGTTCGGGACTTCAGGATAAAAGTACTGGACATGGTGGAGGTGTTCTTGACGAAGCACAGCAGCAGCGCTCTGGTTCTTGGGATGATTGAACCGATGCTTAGCATGATTGAGAACGGGATGAGCTCCGAAACCACCCAACAGGAGCAGGACTTCCTGCGCAAGGCTGCATACATCTTCAAGCATCGACTTTGTCGTGCGAAGTATTACTGCAGGGAGATCGACGGACGAGAGGCGGAGCTTCACGAAATGCTTGAGCGTCTGATTGGCCGAGCCCAGAAACTGACAGACTCATCCGTGTCTCTGTACTACTTCAGTGCTGCTCTCTATGTGCTGAAGGTGTTAAGAGGTGTTGCGAGCGAACAGGATTCACCAACTGCACCGTCAACACCGGCGGAGCTGAAGGTTATGGGTAAAGTGGATGCTGAGAGAGTCACGACTTGCTTCAGAAAAGTGCTGACATCTTTCTTAACGAAGAGGAAAAGCCCTCTCACTGGACAAATGTTCATAGACCTCTTCGAGAGATTCCCTGTGTTTTATGTGAACCTGTTGGACACGCTTGTGGAGTGCATCACTACTGGAGTGAGAGAACATCAGCAGGGTCTGGCCTGTTTCATGGTGCTCAAGGCCCTGCAGTCTAAAGACGTGAAGAACCTGATGTCTGATGCTCAGAGAACTGAACTGTGTCAGAAAGCTGTGGACCAGCTCGTCAAGAGTTTTGAAGATGTACAGTGTGAGAACAAAACGGATCGAGAGAAGATAATCAAGGCGCTAGAGCTCTGTCAGCATCTTGTTAAATCCGTTCGCAATCAGATGATGCAGGTTAATCTGGAGCTCCTTCAGGATGTTCTCAAGTCGATGAACGCTGATGGAAGCCTGCAGAAACAAGGACATCTGGAGAACTCGTACTGGaatgtgatgcatttatttggcGTGCAAAAGCCAAAGGTGGAAAAGGTGAAGAAAGTCGCAGAGGCAGAGCAGACAGAAAAGACCACGAAAAAGAAGAAGGGGTTCCTTCCTGAAACGAAGAAACGCAAGAACCGCAAGAAGCCCACCGTCCTGGAGGGAAAAGAGACGCCAGCCCCTACAGAAACCCCCGAAGGAGCATCAGGagaaggaaagaagaaaaagaagaagaacaagagGAGGAAACAGCagggaggagaagaagagagacaaAATCAGCCCGCcgcaaagaaaatgaaaacacaggagcaacaaaacaagaagaagaagaaaaagaaaggaggaCAGCAGAAAGCTGATGGGCAATAATCAGGCTGAAAACGATTAGAAGTGTCGCTGTCTGTGACGTTCAACACAAACTGTGGGCCTGGCCTTCAGAAATCTGACTTTAAGACCAGTTCTGTTTAGAGAAATCAGCCACTGTGAAGAGAAACTCAGATCTGTGTTATTTGCCCGTTTGTGATTACTTGCATGAtagaatttttgtaaaaacaatggATGAAAtactaaaaggtttttttattcttgttgtGTAAAGTACAGTGTTTGCATCAGTCGTGTCAGTTATTTGAAGAGGTGCGTTCTAGTTACACTTTAAAACTATACAAATAACAAGTGGGAATTAACAACCAGCGTTACATTTCGGTATACAATGTTTTGTTGTGCTCCACTGTTAGCACGGGATTTTTGCGTTTcttaacattaaacattattttgaccCTTTCGACAGAattattttatcagttttaaCATGCATTGTAGTGTTAAATCAATCTGCctgctttgcaaaaaaaattatttttatgaaatacataCCGATcagtaaataactttaaatatatattcttaatattatgttttaaataatttttgatcaTTGTAATCTGATCTATATACAAATTGCATTCACATAATGCACCATAATATTTGTACTGCAGTTATGTCtgattaaatgcacattattatttttta

Function

symbol description
mybbp1a Predicted to enable sequence-specific DNA binding activity and transcription corepressor activity. Predicted to act upstream of or within regulation of transcription, DNA-templated and rhythmic process. Predicted to be located in nucleus. Predicted to be active in nucleolus. Is expressed in several structures, including digestive system; immature eye; mesoderm; musculature system; and nervous system. Orthologous to human MYBBP1A (MYB binding protein 1a).

NR:

description
myb-binding protein 1A-like protein

GO: NA

KEGG:

id description
K02331 POL5, MYBBP1A; DNA polymerase phi

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238853.1 True 4503 mRNA 0.48 27 287133 299381

Neighbor

gene id symbol gene type direction distance location
paip1 paip1,LOC107725119,LOC107704219,LOC107658232,LOC107567649 coding downstream 835 278951 ~ 286298 (-)
c5h5orf34 LOC107750289,LOC107658216,LOC107567649 coding downstream 8849 273168 ~ 278284 (-)
LOC122344789 LOC107704867,LOC107594577 coding downstream 14318 262368 ~ 272815 (-)
lifra LOC107594555,LOC107704172,LOC107658266,LOC107725078,LOC107750295,LOC107567645 coding downstream 64579 205102 ~ 222554 (-)
LOC122345224 spef2,LOC107704166,LOC107725157,LOC107573760 coding downstream 85524 185338 ~ 201609 (-)
fgf10b fgf10,LOC107705049,LOC107725110,LOC107594591,LOC107658296,LOC107567653 coding upstream 2257 301638 ~ 313028 (-)
adamts12 LOC107725168,LOC107704241,LOC107594580,LOC107750303,LOC107658289,LOC107567650 coding upstream 17460 316841 ~ 339731 (-)
LOC122345880 NA coding upstream 72290 371671 ~ 372818 (-)
si:ch211-12e13.10 NA coding upstream 99038 398419 ~ 399683 (-)
lrp13 LOC107725159,LOC107594583,LOC107704910 coding upstream 100611 399992 ~ 411093 (-)
G32086 NA non-coding downstream 82597 162490 ~ 204536 (-)
G32102 NA non-coding downstream 261241 25514 ~ 25892 (-)
G32100 NA non-coding downstream 269618 16470 ~ 17515 (-)
G32099 NA non-coding downstream 271828 12703 ~ 15305 (-)
G32098 NA non-coding downstream 275264 11445 ~ 11869 (-)
G32150 NA non-coding upstream 51586 350967 ~ 352079 (-)
G32177 NA non-coding upstream 132249 431630 ~ 431890 (-)
G32186 NA non-coding upstream 156736 456117 ~ 482271 (-)
G32187 ugt2b3,ugt2b1,LOC107667397,LOC107725113,LOC107667542,LOC107723313 non-coding upstream 159099 458480 ~ 479881 (-)
G32191 NA non-coding upstream 165683 465064 ~ 470468 (-)
rictora rictora,LOC107704198,LOC107658248,LOC107567655,LOC107750288,LOC107594576,LOC107725140 other downstream 25462 239951 ~ 261671 (-)
G32104 LOC107725162,LOC107594575 other downstream 250785 35777 ~ 36348 (-)
G32103 LOC107725162,LOC107704185,LOC107594575 other downstream 252416 33779 ~ 34717 (-)
G32101 LOC107594575,LOC107725162,LOC107704185 other downstream 263184 20139 ~ 23949 (-)
kcnv2b atp5ib,atp5i,atp5ia,kcnv2b,LOC107703581,LOC107725101,LOC107704252,LOC107594594,LOC107723293 other upstream 82671 382052 ~ 387878 (-)
ddr2l ddr2l,LOC107704361,LOC107725118,LOC107550294,LOC107723312,LOC107667359,LOC108444179 other upstream 257273 556654 ~ 583095 (-)
wdr31 wdr31,si:ch73-266o15.4,LOC107653158,LOC107667323,LOC107751417 other upstream 323133 622514 ~ 631126 (-)
castor1 gatsl3,LOC107755828,LOC107726730,LOC107704487 other upstream 1013223 1312604 ~ 1336187 (-)
lrrc74b lrrc74b,LOC107755819,LOC107667596,LOC107599620 other upstream 1043225 1342606 ~ 1354414 (-)

Expression


Co-expression Network