zfr (zfr,LOC107746805,LOC107681158,LOC107552600,LOC107602019)


Basic Information

Item Value
gene id zfr
gene name zfr,LOC107746805,LOC107681158,LOC107552600,LOC107602019
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 15293856 ~ 15308440 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238862.1
CGCGCATGTGCGGTAAGAGCTATATCCTGGTACGACCTTCTCATATAAAAAGGCAGGGTTACGAGTCAGAGTTCGTAAGAGAATAGGAAACCAATGATTCCCATATGTCCAGTAGTCTCCTTCACCTATGtgccCAGCCGGCTAGGTGAAGATGTCAAAATGGCCACCGGCAACTACTTTGGATTTACCCATGGTGCTGCCGCCCAGTACAGTCAGCAGCCGGCTGCTGGGGTAGCATACACCCACCCCACTACAGTGGCCAGCTATACTGTGCATCAAGCACCTGTGGCGGCACACACGGTGGCAGCAGCCTACGCCCCTACAGCCGCCACGGTTGCTGTTGCTAGGCCTGCACCAGTTGCAGTAGCAGCAGCTGCGGCTACTGCCGGAGCTTATGGAGGTTACCAGCCAACCCACGCTGCCACGGATTATGGGTATGCACAGAGACAACCGGAGGTACCCCCACCACCGCCACCTGTTACCTCACAAAACTACCagGACTCCTATTCCTATGTGCGGTCCACAGCTCCAGCTGTAGCGTATGACAGTAAACAGTACTACCAGCAACCTGCAGCTACACCGTCTGTGGCCGCAGCAGCAGCCCAGCCTCAACCCACTGTGGCCGAATCCTACTATCAGACAGCCCCTAAAACTGGATACAGTCAAGGCGCCACTCCGTACACCCAGACCCAGCAAACGCGTCAGGTTACAGCCATAAAGCCAGCCACCCCTAGACCTGCCACCTCAACCTTCTCCATTTACCCAGTGTCCTCTGCTGTACAGCCGGTCGCAGCCGCGGCAGCTGCCTCTGTAGTACCATCATATTCTCAGAGTCCCACCTACAGCACCAATGCTGTAACGTACTCTGGAACTTCATACTCTGGCTATGAAGCTGCAGTTTATTCAGCTGCCTCTTCCTACTatcagcagcagcaacagcagcagaaaCAGGCGGCTGTCGCCGCAGCCGCCACTGCCGCATGGACCGGCAGCACTTTTACTAAGAAAACTCCCTTGCAGAACAAAACACTCAAACCTAAACAACCCCCTAAACCACCACAAATACACTACTGTGACGTCTGCAAAATCAGCTGTGCTGGACCCcagACCTATAAGGAGCATTTGGAGGGTCAGAAGCACAAAAAGAAGGAAGCTGCATTGAAGCTGTCACAGAGCAGCAGTAGCAGCAGCGGAGGCGGGAGCTCCGCCCGCGGCACACAGAATCAGCTACGCTGTGAGCTCTGTGACGTTTCCTGTACTGGAGCTGATGCCTACGCGGCGCACATCAGAGGAGCCAAACACCAGAAGGTTGTGAAATTGCATACCAAACTAGGAAAGCCAATACCATCCACAGAGCCCAGTGTTGTTTCCCAATCCTCCAGCTCAAGTACAGCTGCTCCTAATAAAACTGCCAGCTCCAACATCAGCAGCTCAACAAGCACATCGTCCAATCTGTCTTCTTCCTCTGTTTCTGCCTCTTACCTAAAATCTGGCAGCATGGTCAACAACATGGCAGCTTCAGCTGCACAAGGCAAGAGCCCAGTGCCCAGCAGTGTCTCGGTCAACAGCACCTCTGTCAAGAAGGTCAACACACCCAAGATCAACTTTGTTGGTGGAAACAAGTTACAAACCACTGctgttaaaaatgaagaatCCAAGATGGAGGCAGCTAAAACGGCACAGTCTGCTGTGTCTTCACAAACACAGGACCTAAAGAATGACATTCCTGACCCTCTGTCACCTCAATCAGCACTTGCAGCCCTGCAGAGTGATGTTCAGCCTGTCGGACATGACTATGTTGAAGAGGTAAGGAATGATGAAGGAAAGGTTATCCGGTTCCACTGCAAACTGTGCGAATGCAGTTTTAATGACCCGAATGCcaaagaaatgcatttgaaagGAAGGAGACATCGACTACAGTATAAGAAAAAGGTGAACCCAGATCTTCAGGTTGAAGTGAAACCTAGCATCCGAGCCAGGAAGATCCAAGAGGAAAAGATGAGGAAGCAGATGCAAAAGGAAGAGTATTGGAGAAGACGTGAAGAGGAGGAGCGCTGGAGGATGGAGATGAgGCGCTATGAAGAGGACATGTATTGGCGACgtatggaggaggagcagcacCACTGGGAAGAAAGGCGCAGAATGCCTGATGGTGGTTATCCACAGGGTCCACCTGGACCTCCTGGTCTTCTTGGAGTGAGGCCTGGGATGCCCCTTCCTCAACCACAAGGACCAGTGCCTCCACGTCGCCCTGATTCCTCAGATGATCGGTATGTGATGACCAAACATGCAGCTATTTACCCATCTGAGGACGAGCTCCAGGCCATCCAGAAGATTGTATCAATCACTGAACGAGCACTTAAGCTTGTCTCTGACATCATCACAGACCAAGATGCAAGTGCAAGTGCAAAGGGCAAAGAAGAggataaagaaaagaaagagccTCCCAAAGACAGAGTGCTGAAAGGAGTGATGCGGGTAGGCGTTCTCGCCAAAGGGCTGCTTCTACGAGGAGACAAAAATGTCAACCTGGTCCTCCTTTGTTCTGAGAAGCCTACTAAGAATCTGCTAACACGCATTGTGGAACATCTTCCCAAACAACTCACGATGGTAACTCCGGAGAAATATGAGGTAAAAGGCTCCATCCAAGAGGCTGCCATTATCCTTACTTCCTCTGCTGAGCCCAAGATGCAGGTGACCATCACCCTCACCTCGCCTGTCATCCGAGAAGAAAACACCCGGGATGGAGATGTAACCTCGAGTATGGTGAAAGACCCAGCGGACGTCTTGGACAGGCAAAAATGCCTTGACGCTCTGGCTGCCCTACGCCACGCTAAGTGGTTCCAGGCTAGGGCTAATGGACTCCAGTCATGTGTGATTGTCATTCGAATACTGCGTGACCTTTGTCAGAGAGTACCCACCTGGTCTGCATTTCCTAGCTGGGCTATGGAGCTGCTGGTGGAGAAGGCCATCAGCAGTGCCTCTGGACCAATGAGCCCTGGAGATGCTCTGAGAAGAGTCTTTGAATGTATTTCCTCAGGCATTCTGCTGTATGGTGCTCCAGGATTGATAGACCCCTGTGAGAAGAATCCAACAGATACTTTGGCTACCATGGAAGAGCAGCAAAGAGAGGACATTACATCAAGCGCTCAGTTTGCCTTGAGACTGCTGGCGTTCCGTCAGATTCACAAGGTTCTGGGTATGGACCCCTTGCCTCAGATGAACTCGCGCTTCAACGTACGGAATAACCGCAAGAGACGACGTGACAACAGCGACGGGACCGATGGATTTGAAgctgaaggaaagaaagacaaGAAGGACTACGAGGGGTTCTGAAGTGCACTACAGTACAGCTAACCCAGCTCTCCCCGCACCCGTTGTAAATCCTGTTCATTCCAGGAATACGAAATGTTGTTTCTGTTGACCTCTGTGCATGCTAATTACTACTACCatgaagttttgtttttgagctCTGGTGAAGGCCCAATGATGGCCACTTGGGGAAATGCCAGGCTTCATTTCCTTGACGCATAGACCGTAGTCCATCTCTGTCGTTTAGTCTGGTGTCTTGGTTTAAAGATTTGAGATGCGCACAAACCTGAGAGGTTAAGCCTAAAGTTCATGCTCCATTCAGCACGTTGGATGTAATATTTCGCCATCTTCAGATCTTTTACGCGTTTCAGGCTAGGCATTTGTAGACGTCTGAGCTGCGTACTTGTGTCAGTGTGGAACAGATTCTTTATCTTATCCTTCCAGTCACACATGTAAAGTAACTTTGACAATGGCTTCCTTGGCTTTGCAATAAATTGTTTAGGTGTTTTTGTAACTCATGTTTAGAGACATTCCTCTTAAAACCACAAGATCGAGATATGATGATTGATTCATGCGACGCATTAGTCCTGTTGTGATGAATGTGACGTTGACTGGACGTGGATTTTATACAAGCATGTATTTTCCATTGCTGGCGCATTCTGAAGGTTGGGATGGCTTTTAACCATTTGTAAATTTACGTCAATGAAACATCTTTACAACCCTGTTCCTTCTATATGCTTAATCTAAGTGATGTAAGGCTGCACTTGTCCCAAAGTTAGGCTGTAAGTGTGCGCTGATATTCCCAGGCCTCTGTGGTTTAGCTGTATCACGTTTCTGAAAACCCTGACCCTGAAATCAGACCTGGGCTTATACCATAAGTATCTATCAGTTGTCccaattagtttaataaagaaTCTTAAGTTACCAGTCAGTTTCATGAATACAGTTTACCAACTAAGCCAGgcttattttagttagtttgacttattttgaaacaaatcaaataacAGGCCCATTTGCTAAATTAGTTTGAAACAGGCCCCAGATCAATTGTTCACACAAGGAAGTATTAAAAGCAGAAACATTTGGTCAAAGacgtatatttttttttccttttataaattgtaattgaCCCAGGTCtgcctgtgttttgtgttcataaTATTGTAAACCCtaaatgtatctttaaatgTGATCATAGAGCTGTATGATCTCTAATATGATCATTTACTAAGCCTGTATCTAATCTTGCAATAGATCTTCAGAAACAAATGCCTGTATGGTTTTAAAGCACAGGAATGTTGtttatgttcttttgtttttaatggattttgttttactggttaATAGACTCATAGTTGCTTGCCCTTATTTTTGGTTTCTGATTCAAGTTTGTTGAATATCTGTTGAAGATGGGAGGGACACAAGTGAAATATCGGTATTGTAACTGCAGATTGATGTAGACTTACCCTTTGATGCTTGTCATTCAATGTCAAGGTACTACTGCATTACAATGCGTATAATAAAGACATTTCCAGAATTA
>XR_006250970.1
CGCGCATGTGCGGTAAGAGCTATATCCTGGTACGACCTTCTCATATAAAAAGGCAGGGTTACGAGTCAGAGTTCGTAAGAGAATAGGAAACCAATGATTCCCATATGTCCAGTAGTCTCCTTCACCTATGtgccCAGCCGGCTAGGTGAAGATGTCAAAATGGCCACCGGCAACTACTTTGGATTTACCCATGGTGCTGCCGCCCAGTACAGTCAGCAGCCGGCTGCTGGGGTAGCATACACCCACCCCACTACAGTGGCCAGCTATACTGTGCATCAAGCACCTGTGGCGGCACACACGGTGGCAGCAGCCTACGCCCCTACAGCCGCCACGGTTGCTGTTGCTAGGCCTGCACCAGTTGCAGTAGCAGCAGCTGCGGCTACTGCCGGAGCTTATGGAGGTTACCAGCCAACCCACGCTGCCACGGATTATGGGTATGCACAGAGACAACCGGAGGTACCCCCACCACCGCCACCTGTTACCTCACAAAACTACCagGACTCCTATTCCTATGTGCGGTCCACAGCTCCAGCTGTAGCGTATGACAGTAAACAGTACTACCAGCAACCTGCAGCTACACCGTCTGTGGCCGCAGCAGCAGCCCAGCCTCAACCCACTGTGGCCGAATCCTACTATCAGACAGCCCCTAAAACTGGATACAGTCAAGGCGCCACTCCGTACACCCAGACCCAGCAAACGCGTCAGGTTACAGCCATAAAGCCAGCCACCCCTAGACCTGCCACCTCAACCTTCTCCATTTACCCAGTGTCCTCTGCTGTACAGCCGGTCGCAGCCGCGGCAGCTGCCTCTGTAGTACCATCATATTCTCAGAGTCCCACCTACAGCACCAATGCTGTAACGTACTCTGGAACTTCATACTCTGGCTATGAAGCTGCAGTTTATTCAGCTGCCTCTTCCTACTatcagcagcagcaacagcagcagaaaCAGGCGGCTGTCGCCGCAGCCGCCACTGCCGCATGGACCGGCAGCACTTTTACTAAGAAAACTCCCTTGCAGAACAAAACACTCAAACCTAAACAACCCCCTAAACCACCACAAATACACTACTGTGACGTCTGCAAAATCAGCTGTGCTGGACCCcagACCTATAAGGAGCATTTGGAGGGTCAGAAGCACAAAAAGAAGGAAGCTGCATTGAAGCTGTCACAGAGCAGCAGTAGCAGCAGCGGAGGCGGGAGCTCCGCCCGCGGCACACAGAATCAGCTACGCTGTGAGCTCTGTGACGTTTCCTGTACTGGAGCTGATGCCTACGCGGCGCACATCAGAGGAGCCAAACACCAGAAGGTTGTGAAATTGCATACCAAACTAGGAAAGCCAATACCATCCACAGAGCCCAGTGTTGTTTCCCAATCCTCCAGCTCAAGTACAGCTGCTCCTAATAAAACTGCCAGCTCCAACATCAGCAGCTCAACAAGCACATCGTCCAATCTGTCTTCTTCCTCTGTTTCTGCCTCTTACCTAAAATCTGGCAGCATGGTCAACAACATGGCAGCTTCAGCTGCACAAGGCAAGAGCCCAGTGCCCAGCAGTGTCTCGGTCAACAGCACCTCTGTCAAGAAGGTCAACACACCCAAGATCAACTTTGTTGGTGGAAACAAGTTACAAACCACTGctgttaaaaatgaagaatCCAAGATGGAGGCAGCTAAAACGGCACAGTCTGCTGTGTCTTCACAAACACAGGACCTAAAGAATGACATTCCTGACCCTCTGTCACCTCAATCAGCACTTGCAGCCCTGCAGAGTGATGTTCAGCCTGTCGGACATGACTATGTTGAAGAGGTAAGGAATGATGAAGGAAAGGTTATCCGGTTCCACTGCAAACTGTGCGAATGCAGTTTTAATGACCCGAATGCcaaagaaatgcatttgaaagGAAGGAGACATCGACTACAGTATAAGAAAAAGGTGAACCCAGATCTTCAGGTTGAAGTGAAACCTAGCATCCGAGCCAGGAAGATCCAAGAGGAAAAGATGAGGAAGCAGATGCAAAAGGAAGAGTATTGGAGAAGACGTGAAGAGGAGGAGCGCTGGAGGATGGAGATGAgGCGCTATGAAGAGGACATGTATTGGCGACgtatggaggaggagcagcacCACTGGGAAGAAAGGCGCAGAATGCCTGATGGTGGTTATCCACAGGGTCCACCTGGACCTCCTGGTCTTCTTGGAGTGAGGCCTGGGATGCCCCTTCCTCAACCACAAGGACCAGTGCCTCCACGTCGCCCTGATTCCTCAGATGATCGGTATGTGATGACCAAACATGCAGCTATTTACCCATCTGAGGACGAGCTCCAGGCCATCCAGAAGATTGTATCAATCACTGAACGAGCACTTAAGCTTGTCTCTGACATCATCACAGACCAAGATGCAAGTGCAAGTGCAAAGGGCAAAGAAGAggataaagaaaagaaagagccTCCCAAAGACAGAGTGCTGAAAGGAGTGATGCGGGTAGGCGTTCTCGCCAAAGGGCTGCTTCTACGAGGAGACAAAAATGTCAACCTGGTCCTCCTTTGTTCTGAGAAGCCTACTAAGAATCTGCTAACACGCATTGTGGAACATCTTCCCAAACAACTCACGATGGTAACTCCGGAGAAATATGAGGTAAAAGGCTCCATCCAAGAGGCTGCCATTATCCTTACTTCCTCTGCTGAGCCCAAGATGCAGGTGACCATCACCCTCACCTCGCCTGTCATCCGAGAAGAAAACACCCGGGATGGAGGCTAGGGCTAATGGACTCCAGTCATGTGTGATTGTCATTCGAATACTGCGTGACCTTTGTCAGAGAGTACCCACCTGGTCTGCATTTCCTAGCTGGGCTATGGAGCTGCTGGTGG

Function

symbol description
zfr Predicted to enable double-stranded RNA binding activity and single-stranded RNA binding activity. Predicted to be located in cytoplasm and nucleus. Orthologous to human ZFR (zinc finger RNA binding protein).

NR:

description
LOW QUALITY PROTEIN: zinc finger RNA-binding protein-like

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003677 DNA binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K13203 ZFR; zinc finger RNA-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238862.1 True 4855 mRNA 0.47 20 15293856 15308440
XR_006250970.1 False 2864 transcript 0.52 17 15296018 15308440

Neighbor

gene id symbol gene type direction distance location
mtmr12 mtmr12,LOC107746804,LOC107552602,LOC107708634,LOC107602020 coding downstream 974 15280214 ~ 15292882 (-)
golph3a golph3,LOC107681169,LOC107552603,LOC107746803,LOC107602021 coding downstream 14584 15268676 ~ 15279272 (-)
parp8 parp8,LOC107746800,LOC107661236,LOC107708633 coding downstream 94019 15174388 ~ 15199837 (-)
isl1a isl1,LOC107661270,LOC107708623,LOC107599171,LOC107602011 coding downstream 165684 15121996 ~ 15128172 (-)
fsta fst,fsta,LOC107746798,LOC107599173,LOC107708632,LOC107602023,LOC107661233 coding downstream 270400 15016899 ~ 15023456 (-)
eef2l2 eef2l2,LOC107681082,LOC107746808,LOC107552597,LOC107676651,LOC108414462,LOC107708638,LOC108255789 coding upstream 142584 15451024 ~ 15457371 (-)
akr1a1a akr1a1a,LOC107602015,LOC107708643,LOC107676648,LOC105901177,LOC108414433 coding upstream 163652 15472092 ~ 15477073 (-)
dnajb5 dnajb5,LOC107746810,LOC107681063,LOC107708641 coding upstream 171740 15480180 ~ 15493670 (-)
epg5 epg5,LOC107746812,LOC107681055,LOC107676662,LOC107708644 coding upstream 197526 15505966 ~ 15529346 (-)
riok2 riok2,LOC107746813,LOC107681048,LOC107676637 coding upstream 221634 15530074 ~ 15534492 (-)
G36811 NA non-coding downstream 124498 15169047 ~ 15169358 (-)
G36714 NA non-coding downstream 388235 14905385 ~ 14905621 (-)
G36708 NA non-coding downstream 412791 14880865 ~ 14881065 (-)
G36696 NA non-coding downstream 594903 14698736 ~ 14698953 (-)
G36631 NA non-coding downstream 641463 14652095 ~ 14652393 (-)
G36967 NA non-coding upstream 253282 15561722 ~ 15562078 (-)
G36968 NA non-coding upstream 253708 15562148 ~ 15562363 (-)
G36969 NA non-coding upstream 255658 15564098 ~ 15565262 (-)
G36986 NA non-coding upstream 405235 15713675 ~ 15713975 (-)
G37067 NA non-coding upstream 420763 15729203 ~ 15729893 (-)
pdzd2 pdzd2,LOC107746802,LOC107681406,LOC107661237 other downstream 28911 15205951 ~ 15264945 (-)
LOC122345141 LOC107752369,LOC107661250,LOC107567461 other downstream 991475 14292063 ~ 14302381 (-)
znhit1 znhit1,LOC107752359,LOC107661214,LOC106567874 other downstream 1011236 14279674 ~ 14282620 (-)
rnf214 LOC107663407,LOC107746393,LOC107599207,LOC107596114,LOC107734124,LOC107661199,LOC107599223 other downstream 1237151 14040982 ~ 14056705 (-)
tmprss13b LOC107746439,LOC107663381,LOC107599230 other downstream 1284320 14001934 ~ 14009536 (-)
npr3 LOC107681138,LOC107746807,LOC107552598,LOC107602007,LOC107708637,LOC107661273 other upstream 41576 15350016 ~ 15367413 (-)
alkbh2 alkbh2,LOC107746816,LOC107552593,LOC107676640 other upstream 259579 15568019 ~ 15578967 (-)
cenpv cenpv,LOC107718355,LOC107676655,LOC107746825,LOC107680877,LOC107553589,LOC107552586 other upstream 395093 15703533 ~ 15709430 (-)
emc6 emc6,LOC107680863,LOC107746824,LOC107552584,LOC107553592,LOC107552561 other upstream 416587 15725027 ~ 15728108 (-)
fam222ba LOC107552581,LOC107746861,LOC107680853,LOC107676666,LOC107553569,LOC107680837,LOC107552580,LOC107746822,LOC107746829,LOC107680824,LOC107552579,LOC107676664,LOC107553594,LOC107718349 other upstream 434300 15742740 ~ 15808380 (-)

Expression


Co-expression Network