flot2a (flot2,flot2a,LOC107746832,LOC107676660)



Basic Information


Item Value
gene id flot2a
gene name flot2,flot2a,LOC107746832,LOC107676660
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 15821869 ~ 15838717 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence


>XM_043238896.1
GCGGTGACTAAGCGGTCCGAGCAGAAAACGGGAGGAATATGGTGTACTCAAGACTGCTTTGAGTGCCTTGcttttgtatttctgttttcaatACACAATATCGTcgtctttggaaaaaaaaccccaagtaATTTCACGTTTTGAATAGCGTTTTAAAGCCGTCGGGCAGGAAAATATGGGGAATTGCCACACGGTTGGACCAAACGAAGCCTTGGTGGTATCAGGTGGCTGCTGTGGCTCTGATGAGAAGAGCTATACAGTGGGCGGTTGGGCCTGGGCATGGTGGCTTATCACAGACATACAGAAGATAACCCTTGAGATAATGACCCTGCAACCCAAGTGTGAGGATGTAGAGACAGCGGAGGGGGTAGCTATTACTGTCACAGGTGTGGCACAGGTGAAGGTCATGACTGACAATGAGCTGCTGGGTTATGCCTGTGAACAGTTCCTGGGCAAGACAGTGGCAGAGATAAAAAGTGTCATTCTGCAGACTCTGGAAGGTCACCTGCGCTCTATTCTTGGGACTTTGACGGTGGAGCAGATCTACCAGGATAGGGATCAGTTTGCCAAGCTGGTGAGGGAGGTAGCGGCACCTGATGTGGGCAGGATGGGCATTGAGATCCTAAGCTTTACTATCAAGGATGTGTACGATAAGGTGGACTACTTGAGCTCCTTGGGGAAATCCCAGACTGCTGCTGTTCAGAGAGACGCTGACATTGGTGTGGCTGAAGCAGAGAGAGATGCTGGAATCAGGgaagcAGAATGTAAGAAGGAGATGATGGATGTAAAATTCCAAGCCGATACAAGAATGGCAGACTCAAAGAGAGAACTGGAGATGCAGAAGGCGGCCTTCAATCAAGAAGTCAACACAAAGaaagCTGAGGCGCAGTTGGCCTATGAGCTTCAGGCAGCCAAGGAGCAGCAGAAGATCAGACTGGAGGAGATTGAGATCGAGGTGGTTCAGAGGAAGAAGCAGATCTCCATTGAGGAGAAAGAGATCCTCAGGACAGATAAAGAGCTGATCGCCACCGTGAGGAGACCAGCTGAGGCTGAAGCCTACAAGATGCAGCAGCTCGCAGAGGCAAAGAAGATAAAGAAGGTGTTGACGGCACAGGCTGAAGCAGAGAAGATCAAGCGTATTGGAGAAGCAGAGGCCGGCTCCATTGAGGCTGTGGGTAAAGCCGAAGCAGAGAAGATGAGGCTCAAAGCTGAGGCCTATCAGCAGTACGGGGAGGCTGCAAAGACTGCCCTCGTCCTGGAGGCCCTGCCAAAGATTGCTGAGCAGGTGGCGGCCCCCTTGAGTCGTACCAACGAGATTGTGATCCTGAGCGGCGACGGTGGCCGTGTTACCGGGGAAGTGAATCGTCTGTTGGCTGAACTACCTGTTTCTGTAAACGCCCTCACAGGGGTGGATCTGTCCAAGATCCCTTTGCTTCAGAAAATGACCAATCCTCAAGCTTGAACACACTCCTTCCACTCCGCTGCCTTTCTGACACTCCCACATTGATTGCCttgaaaagaaataagaaactCGAGCTGTAttgtttttacagaaatgaGGAATTgatttattggatttttttttagacccCTGGTGCCTTACCTCTGCAGGACCAGAATCTCTGCATGTGCTCTTGTTTTTGTCActtatatcctttttttttttttttttttttttttttttttttttttgttgaaacaaCATACCTCaattatagttattttgttAATCGCAGAACTGTTTCATAAAATTCACCAGTAGGCagcttcaggtgtgtgtgtctgtgtgtatgtagtgatttaaaagataaagtagtatttccattttaatgggTAGCTAAGGTTGTATTCGGTTATGTTTATGCAATGTATGAAGTTATATAGAAGTATAGCGTAGTAGAGCCATTAGATGTGTTACAGCATGTTTATTGGGTTGATCAACTGGGCGTTCGAAATCATTCATCATTTTGAAGACATTGCTCTTCAGGTCAAATAGAGAACTGACTTTTAGTTTATCTAACCAATACATTCAAACAAGAGTTTTGTttgtaaacatctttttttaatgttcaaacaGTAAACACTTTTGTTAAAAGTGGGATGAAAACaatgaatttttttgtaaacttttgCTTTTAGGGGTTGTAGGTCACATCACACTGTTACTGTATTCGTTCAATTTAAAGCTACACCATGTGATTCATAATCATATCTGTATGTATATTCTTTGAGAATGTTATAGTAAGTAGTGgtccaaataatttttttacaccaAGCAAAAGCCAAAACACCCTGAATTTAGcaggatttttaaaatgatctttattttttcattgcagAAAACCTCTGATAATTTACCTCACCCAATGTTTATGCAGACGATAAAGCTTTGGCTCTCTTCCATTAGCTGCAAGTAAGATTTTAGGACTGCAGCCAGAACCCAGTGCACTCTTATCTACTGTTAAATCGACAAATTTGATACTGTGCATTAAGTTGAACAATCTACCATGTTCGTCGTTTCCTTGAAGATGCTCTGTGCCGAGTTTATCCCATATTAAAGAacttcagttatttttaattcagttatgCAACTTGatttctcttcttcctctttatGGTTTAACCGTAATGTCATGTGTATTCTTTATTCCTAAAGTCCTAATTATCGTCATCCAGATAATGTGAGAGCTGTCAGGTTATATGTGAATTTTAACTCCGCCTCAACTACTTTTTCCCCATCGAACGTGactatattttagttttttgttgtcttCAGCTTGTTatgaaaatacaaatcaattTGCCAAATGTCAGTAGGTCAAAAAGtatatctgcatttattttacattgctgCTACATCATAAATAATTGGGTCTTTTGTTCATTGGTAATCAGATgccaaatatgttttttgttgtttgtttgttttttacagtacaCTATGGCAAAAGTATTTGTGAAAGGATATTCTATtttcattcttcaaaatgacgtgcgttttttttttcagctgggAAAAAGGGaactgtgcttttaaaatgtagccATCGTTTATAAGATGTTGCACACATCAAATCAACTTCAGGCTTTGAAAACTTTTCTATGCTTAATCTGAACTAACAAAAGCTGTTTCTGAGCGGAATGTGTTTGTTCTAGAGTTCTGTGATGTTTCCATCACTAACAATCACATACTGAGAATGTGTTATATAGCAGAGCATATAGTTAATGCCTATAACTTGTAGAatgaatatacaatatatgtaacgaataagaaatgtttctgatCACAGTCAATAAATTTGTCTTGATTTA
>XM_043238897.1
GGCGGTGACTAAGCGGTCCGAGCAGAAAACGGGAGGAATATGGTGTACTCAAGACTGCTTTGAGTGCCTTGcttttgtatttctgttttcaatACACAATATCGTcgtctttggaaaaaaaaccccaagtaATTTCACGTTTTGAATAGCGTTTTAAAGCCGTCGGGCAGGAAAATATGGGGAATTGCCACACGGTTGGACCAAACGAAGCCTTGGTGGTATCAGGTGGCTGCTGTGGCTCTGATGAGAAGAGCTATACAGTGGGCGGTTGGGCCTGGGCATGGTGGCTTATCACAGACATACAGAAACTCTCTCTGGAGATAATGACCATCCTCTGTCGCTGTGAGAATATCGAAACATCGGAGGGTGTCCCCTTGGATGTGACAGGGGTCGCTCAGGTGAAGGTCATGACTGACAATGAGCTGCTGGGTTATGCCTGTGAACAGTTCCTGGGCAAGACAGTGGCAGAGATAAAAAGTGTCATTCTGCAGACTCTGGAAGGTCACCTGCGCTCTATTCTTGGGACTTTGACGGTGGAGCAGATCTACCAGGATAGGGATCAGTTTGCCAAGCTGGTGAGGGAGGTAGCGGCACCTGATGTGGGCAGGATGGGCATTGAGATCCTAAGCTTTACTATCAAGGATGTGTACGATAAGGTGGACTACTTGAGCTCCTTGGGGAAATCCCAGACTGCTGCTGTTCAGAGAGACGCTGACATTGGTGTGGCTGAAGCAGAGAGAGATGCTGGAATCAGGgaagcAGAATGTAAGAAGGAGATGATGGATGTAAAATTCCAAGCCGATACAAGAATGGCAGACTCAAAGAGAGAACTGGAGATGCAGAAGGCGGCCTTCAATCAAGAAGTCAACACAAAGaaagCTGAGGCGCAGTTGGCCTATGAGCTTCAGGCAGCCAAGGAGCAGCAGAAGATCAGACTGGAGGAGATTGAGATCGAGGTGGTTCAGAGGAAGAAGCAGATCTCCATTGAGGAGAAAGAGATCCTCAGGACAGATAAAGAGCTGATCGCCACCGTGAGGAGACCAGCTGAGGCTGAAGCCTACAAGATGCAGCAGCTCGCAGAGGCAAAGAAGATAAAGAAGGTGTTGACGGCACAGGCTGAAGCAGAGAAGATCAAGCGTATTGGAGAAGCAGAGGCCGGCTCCATTGAGGCTGTGGGTAAAGCCGAAGCAGAGAAGATGAGGCTCAAAGCTGAGGCCTATCAGCAGTACGGGGAGGCTGCAAAGACTGCCCTCGTCCTGGAGGCCCTGCCAAAGATTGCTGAGCAGGTGGCGGCCCCCTTGAGTCGTACCAACGAGATTGTGATCCTGAGCGGCGACGGTGGCCGTGTTACCGGGGAAGTGAATCGTCTGTTGGCTGAACTACCTGTTTCTGTAAACGCCCTCACAGGGGTGGATCTGTCCAAGATCCCTTTGCTTCAGAAAATGACCAATCCTCAAGCTTGAACACACTCCTTCCACTCCGCTGCCTTTCTGACACTCCCACATTGATTGCCttgaaaagaaataagaaactCGAGCTGTAttgtttttacagaaatgaGGAATTgatttattggatttttttttagacccCTGGTGCCTTACCTCTGCAGGACCAGAATCTCTGCATGTGCTCTTGTTTTTGTCActtatatcctttttttttttttttttttttttttttttttttttttgttgaaacaaCATACCTCaattatagttattttgttAATCGCAGAACTGTTTCATAAAATTCACCAGTAGGCagcttcaggtgtgtgtgtctgtgtgtatgtagtgatttaaaagataaagtagtatttccattttaatgggTAGCTAAGGTTGTATTCGGTTATGTTTATGCAATGTATGAAGTTATATAGAAGTATAGCGTAGTAGAGCCATTAGATGTGTTACAGCATGTTTATTGGGTTGATCAACTGGGCGTTCGAAATCATTCATCATTTTGAAGACATTGCTCTTCAGGTCAAATAGAGAACTGACTTTTAGTTTATCTAACCAATACATTCAAACAAGAGTTTTGTttgtaaacatctttttttaatgttcaaacaGTAAACACTTTTGTTAAAAGTGGGATGAAAACaatgaatttttttgtaaacttttgCTTTTAGGGGTTGTAGGTCACATCACACTGTTACTGTATTCGTTCAATTTAAAGCTACACCATGTGATTCATAATCATATCTGTATGTATATTCTTTGAGAATGTTATAGTAAGTAGTGgtccaaataatttttttacaccaAGCAAAAGCCAAAACACCCTGAATTTAGcaggatttttaaaatgatctttattttttcattgcagAAAACCTCTGATAATTTACCTCACCCAATGTTTATGCAGACGATAAAGCTTTGGCTCTCTTCCATTAGCTGCAAGTAAGATTTTAGGACTGCAGCCAGAACCCAGTGCACTCTTATCTACTGTTAAATCGACAAATTTGATACTGTGCATTAAGTTGAACAATCTACCATGTTCGTCGTTTCCTTGAAGATGCTCTGTGCCGAGTTTATCCCATATTAAAGAacttcagttatttttaattcagttatgCAACTTGatttctcttcttcctctttatGGTTTAACCGTAATGTCATGTGTATTCTTTATTCCTAAAGTCCTAATTATCGTCATCCAGATAATGTGAGAGCTGTCAGGTTATATGTGAATTTTAACTCCGCCTCAACTACTTTTTCCCCATCGAACGTGactatattttagttttttgttgtcttCAGCTTGTTatgaaaatacaaatcaattTGCCAAATGTCAGTAGGTCAAAAAGtatatctgcatttattttacattgctgCTACATCATAAATAATTGGGTCTTTTGTTCATTGGTAATCAGATgccaaatatgttttttgttgtttgtttgttttttacagtacaCTATGGCAAAAGTATTTGTGAAAGGATATTCTATtttcattcttcaaaatgacgtgcgttttttttttcagctgggAAAAAGGGaactgtgcttttaaaatgtagccATCGTTTATAAGATGTTGCACACATCAAATCAACTTCAGGCTTTGAAAACTTTTCTATGCTTAATCTGAACTAACAAAAGCTGTTTCTGAGCGGAATGTGTTTGTTCTAGAGTTCTGTGATGTTTCCATCACTAACAATCACATACTGAGAATGTGTTATATAGCAGAGCATATAGTTAATGCCTATAACTTGTAGAatgaatatacaatatatgtaacgaataagaaatgtttctgatCACAGTCAATAAATTTGTCTTGATTTA

Function


symbol description
flot2a Acts upstream of or within regulation of cell-cell adhesion mediated by cadherin and regulation of epiboly involved in gastrulation with mouth forming second. Predicted to be located in endocytic vesicle and endosome. Predicted to be part of flotillin complex. Predicted to be active in cytoplasmic vesicle and plasma membrane. Is expressed in several structures, including fin; nervous system; pectoral fin bud; segmental plate; and trigeminal placode. Orthologous to human FLOT2 (flotillin 2).
flot2 Predicted to enable ionotropic glutamate receptor binding activity and protease binding activity. Involved in several processes, including negative regulation of macromolecule metabolic process; positive regulation of NF-kappaB transcription factor activity; and protein localization to cell periphery. Located in several cellular components, including basolateral plasma membrane; cytoplasmic vesicle; and uropod. Part of flotillin complex. Colocalizes with cortical actin cytoskeleton.

NR:

description
PREDICTED: flotillin-2a isoform X2

GO:

id name namespace
GO:0007155 cell adhesion biological_process
GO:0005768 endosome cellular_component
GO:0030139 endocytic vesicle cellular_component
GO:0016020 membrane cellular_component

KEGG:

id description
K07192 FLOT; flotillin

RNA


RNA id representative length rna type GC content exon number start site end site
XM_043238896.1 False 3312 mRNA 0.41 11 15821869 15838716
XM_043238897.1 True 3313 mRNA 0.41 11 15821869 15838717

Neighbor


gene id symbol gene type direction distance location
ncor1 ncor1,LOC107676644,LOC107746860,LOC107553567,LOC107680951,LOC107552540 coding downstream 137433 15616601 ~ 15684436 (-)
LOC122345891 NA coding downstream 205407 15614467 ~ 15616462 (-)
LOC122345011 NA coding downstream 210775 15605437 ~ 15611094 (-)
si:dkey-65b12.6 LOC107746818,LOC107680961,LOC107552589 coding downstream 217537 15589884 ~ 15604332 (-)
atxn2 LOC107746814,LOC107680995,LOC107552590,LOC107708645,LOC107676658 coding downstream 267183 15534694 ~ 15554686 (-)
LOC122345699 LOC107718358,LOC107553579,LOC107676641,LOC107680767,LOC107746876 coding upstream 4276 15842993 ~ 15843844 (-)
LOC122345991 LOC107718358,LOC107553579,LOC107676641,LOC107680767,LOC107746876 coding upstream 11104 15849821 ~ 15850648 (-)
grsf1 grsf1,LOC107746834,LOC107680726,LOC107579879 coding upstream 36876 15875593 ~ 15878477 (-)
si:dkey-245n4.2 si:dkey-245n4.2,LOC107746839,LOC107580348 coding upstream 76647 15915364 ~ 15922607 (-)
rtkna rtkn,si:dkey-40c11.1,LOC107676668,LOC107746864,LOC107681349,LOC107718341 coding upstream 176069 16014786 ~ 16066861 (-)
G37064 NA non-coding downstream 7936 15812915 ~ 15813933 (-)
G37079 NA non-coding downstream 38864 15777713 ~ 15783005 (-)
G37076 NA non-coding downstream 72372 15747522 ~ 15749497 (-)
G37067 NA non-coding downstream 91976 15729203 ~ 15729893 (-)
G36986 NA non-coding downstream 107894 15713675 ~ 15713975 (-)
G37058 LOC107718333,LOC107746835,LOC107552574,LOC107680737,LOC107676661 non-coding upstream 22360 15861077 ~ 15865160 (-)
G37092 NA non-coding upstream 55967 15894684 ~ 15978740 (-)
G37093 aqp3a,LOC107552570,LOC107746837,LOC107680708,LOC107553599 non-coding upstream 67566 15906283 ~ 15910873 (-)
G37098 NA non-coding upstream 99403 15938120 ~ 15938836 (-)
G37212 NA non-coding upstream 492214 16330931 ~ 16332077 (-)
fam222ba LOC107552581,LOC107746861,LOC107680853,LOC107676666,LOC107553569,LOC107680837,LOC107552580,LOC107746822,LOC107746829,LOC107680824,LOC107552579,LOC107676664,LOC107553594,LOC107718349 other downstream 13489 15742740 ~ 15808380 (-)
emc6 emc6,LOC107680863,LOC107746824,LOC107552584,LOC107553592,LOC107552561 other downstream 93761 15725027 ~ 15728108 (-)
cenpv cenpv,LOC107718355,LOC107676655,LOC107746825,LOC107680877,LOC107553589,LOC107552586 other downstream 112439 15703533 ~ 15709430 (-)
alkbh2 alkbh2,LOC107746816,LOC107552593,LOC107676640 other downstream 242902 15568019 ~ 15578967 (-)
npr3 LOC107681138,LOC107746807,LOC107552598,LOC107602007,LOC107708637,LOC107661273 other downstream 454456 15350016 ~ 15367413 (-)
cxcl11.4 LOC107718357,LOC107746875,LOC107553578,LOC107676639,LOC107680777,LOC107552559,LOC107553571 other upstream 1609 15840326 ~ 15841678 (-)
LOC122345695 LOC107718358,LOC107553579,LOC107676641,LOC107680767,LOC107746876 other upstream 7319 15846036 ~ 15847036 (-)
cxcl11.1 LOC107680787,LOC107552555,LOC107718351,LOC107553572,LOC107676630 other upstream 16203 15854920 ~ 15855808 (-)
cxcl20 NA other upstream 18523 15857240 ~ 15859335 (-)
LOC122344710 LOC107755722,LOC107681456,LOC107700059,LOC107553585,LOC107727439 other upstream 415235 16253952 ~ 16256992 (-)

Expression



Co-expression Network