zc4h2 (zc4h2,LOC107663226,LOC107557113,LOC107597258,LOC107672730,LOC107746238)


Basic Information

Item Value
gene id zc4h2
gene name zc4h2,LOC107663226,LOC107557113,LOC107597258,LOC107672730,LOC107746238
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 11840476 ~ 11845269 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238909.1
ATTTCTATTGTCTTTCTTATAAGAGGTATATCCGCTACAATCTTTACCTCCTTTCTTATTCCCACAGAAGTCTCACAGTTTCGTACGTCCACCATGACGGACGAACAAGAGATAATGTGCAAGCTTGAAAACATCAAAGAAATAAGGAATAAGACAATTCAGATGGAAAAGATCAAATCTCGGCTGAGGAGTGAGTTTGAAGCTCTGGAGTCAGAGGAGAAGCACCTGAGAGAGTACAAACAGGAAATGGATCTTCTGCTGCAAGAGAAAATGGCTCACGTAGAAGAGCTGCGTCTCATACATGCTGATATTAATGtgATGGAAAACACTATCAAACAGTCTGAAAGTGACTTGAACAAACTGCTGGAGTCAACCAGACGTCTCCACGATGAATACAAGCCACTGAAAGAACACGTGGATGCCCTGAGGATGACCCTGGGCTTACAGAGACTCCCCGACCTCAGCCAGGAAGAGGAGAAGCTCTCATTGGACTACTTCGAAAAGCAAAAGGCTGAGTGGCAGACAGAACCACAGGAGCCTCCTATCCCAGAATCCTTAGCGGCGGCGGCGGCTGCAGCCCAGCAGCTTCAAGCTGCACGGAAACAGGATGCCAGACAGACAGCGACATTCCGCCAGCAGCCACCTCCTATGAAGGCTTGTCTGTCCTGCCACCAGCAAATCCATCGGAACGCACCGATCTGTCCTCTCTGCAAAGCCAAAAGCCGCTCACGCAACCCTAAAAAACCCAAGAGAAAACCCGACGAGTAACATGCGCAGCTACCAATAACCTCAGAGAAAGCCCGACTAACACACATAACCCCAACAGAAAACAATTTACTTACATAAACGCGTTCACTTGCGCTCTCATGCATGCACAtttccacacatacacacactcactgcacaTCTGTACACCTGAAGGTATATAGTCCTGAAGGAACGGAGCATCTGCAGCCTGATACCCTGACCTCTTATAGTGATCCTGTAGTTAACCCGTCTTCCTGCTTCAGTGGACATGAGGTCtcagtttttcatttcttttttctataaGTGAAACCTCGATATTGTGTTTGTACCGTGTCTGTATTTAGTCCGTAGTGGATATGGATGCTGGTTTAGAAATATCGAAGCGTCCTGTTCTGTGTGGGGTTTAATTCTAGTGCATTAGTTCCAAAGTAAATTCTCTAAAGTGGCTTTAGTGAACAGAGCCGTTCGGACGGTAATCAGTTAACACTTCAACCGATATTTAGTCATTTGAAAGAATTAATAACGGTATGATTTTGCCTatgtcttttaatgttttttccctCACGCTAACAGTGTTTTTCTTGTATTATGTAACCATGGTCTATCCCAGACCATGTCAGTGTTCTAGAATGTCTTGAGGGCCGTTCACACAAGATGTAGATGAAGAGCATTGAAATGGATAAGAACGAGTTTTTAACTTGAAGCGTCTTTAAGAATGCGGTGCTAATGGCAGGAGACGCTGGAAAAAGGCAAACACTCCGCTTACAAAGACCAACGATTAATGCAGACTGAATGCAAAAGCATGTGTGAACAGCCCTTTAGAAGTAGAGTAATTATGGAAGTTGAATGAGAATTCTAAACCTCGAGTTCTTATAGATCTATCATTCAATTTGAGCGAATGAGCtgttatttgtgttttggaATTTGACCCGAGGGGCATTAAGAGCGTGTTATAATCTTCAGTATTGAAtcgttgtgtttgtgttcatctttTCTGAGAGtcagttttttaataattaaaacctGTGAACTAATAAACTTGTGTAACTTTTGTCGAAATGAAATTGTAGAATAATACAGTGTTATCTGATGGATTCGCTTTCTCTCTGTCGCTCTGTCTGGTATTGGCTTGATATGTATCTGGAATTTGACCTTTCACCCATGACCCCTAACAAGCAataatcattctttttttctt
>XM_043238910.1
aagcctCGCCGaggattgtgggaaatgtagtcagCGGCTTGTTACTGTTGTCCACAGCTGAAGTCTCACAGTTTCGTACGTCCACCATGACGGACGAACAAGAGATAATGTGCAAGCTTGAAAACATCAAAGAAATAAGGAATAAGACAATTCAGATGGAAAAGATCAAATCTCGGCTGAGGAGTGAGTTTGAAGCTCTGGAGTCAGAGGAGAAGCACCTGAGAGAGTACAAACAGGAAATGGATCTTCTGCTGCAAGAGAAAATGGCTCACGTAGAAGAGCTGCGTCTCATACATGCTGATATTAATGtgATGGAAAACACTATCAAACAGTCTGAAAGTGACTTGAACAAACTGCTGGAGTCAACCAGACGTCTCCACGATGAATACAAGCCACTGAAAGAACACGTGGATGCCCTGAGGATGACCCTGGGCTTACAGAGACTCCCCGACCTCAGCCAGGAAGAGGAGAAGCTCTCATTGGACTACTTCGAAAAGCAAAAGGCTGAGTGGCAGACAGAACCACAGGAGCCTCCTATCCCAGAATCCTTAGCGGCGGCGGCGGCTGCAGCCCAGCAGCTTCAAGCTGCACGGAAACAGGATGCCAGACAGACAGCGACATTCCGCCAGCAGCCACCTCCTATGAAGGCTTGTCTGTCCTGCCACCAGCAAATCCATCGGAACGCACCGATCTGTCCTCTCTGCAAAGCCAAAAGCCGCTCACGCAACCCTAAAAAACCCAAGAGAAAACCCGACGAGTAACATGCGCAGCTACCAATAACCTCAGAGAAAGCCCGACTAACACACATAACCCCAACAGAAAACAATTTACTTACATAAACGCGTTCACTTGCGCTCTCATGCATGCACAtttccacacatacacacactcactgcacaTCTGTACACCTGAAGGTATATAGTCCTGAAGGAACGGAGCATCTGCAGCCTGATACCCTGACCTCTTATAGTGATCCTGTAGTTAACCCGTCTTCCTGCTTCAGTGGACATGAGGTCtcagtttttcatttcttttttctataaGTGAAACCTCGATATTGTGTTTGTACCGTGTCTGTATTTAGTCCGTAGTGGATATGGATGCTGGTTTAGAAATATCGAAGCGTCCTGTTCTGTGTGGGGTTTAATTCTAGTGCATTAGTTCCAAAGTAAATTCTCTAAAGTGGCTTTAGTGAACAGAGCCGTTCGGACGGTAATCAGTTAACACTTCAACCGATATTTAGTCATTTGAAAGAATTAATAACGGTATGATTTTGCCTatgtcttttaatgttttttccctCACGCTAACAGTGTTTTTCTTGTATTATGTAACCATGGTCTATCCCAGACCATGTCAGTGTTCTAGAATGTCTTGAGGGCCGTTCACACAAGATGTAGATGAAGAGCATTGAAATGGATAAGAACGAGTTTTTAACTTGAAGCGTCTTTAAGAATGCGGTGCTAATGGCAGGAGACGCTGGAAAAAGGCAAACACTCCGCTTACAAAGACCAACGATTAATGCAGACTGAATGCAAAAGCATGTGTGAACAGCCCTTTAGAAGTAGAGTAATTATGGAAGTTGAATGAGAATTCTAAACCTCGAGTTCTTATAGATCTATCATTCAATTTGAGCGAATGAGCtgttatttgtgttttggaATTTGACCCGAGGGGCATTAAGAGCGTGTTATAATCTTCAGTATTGAAtcgttgtgtttgtgttcatctttTCTGAGAGtcagttttttaataattaaaacctGTGAACTAATAAACTTGTGTAACTTTTGTCGAAATGAAATTGTAGAATAATACAGTGTTATCTGATGGATTCGCTTTCTCTCTGTCGCTCTGTCTGGTATTGGCTTGATATGTATCTGGAATTTGACCTTTCACCCATGACCCCTAACAAGCAataatcattctttttttctt
>XM_043238911.1
TCGCTGTGCGATATGACCGCCGCACTCCCAACTTTACTGTTCAGAAGGTTGATACGGTGTTCAGCAGTTGTTGTTATTACCCTAGCATCCTTTGCAACGAATGAACAACGCCAAGACTGGCTAAACTGTTAGTTCAACGAAGTCTCACAGTTTCGTACGTCCACCATGACGGACGAACAAGAGATAATGTGCAAGCTTGAAAACATCAAAGAAATAAGGAATAAGACAATTCAGATGGAAAAGATCAAATCTCGGCTGAGGAGTGAGTTTGAAGCTCTGGAGTCAGAGGAGAAGCACCTGAGAGAGTACAAACAGGAAATGGATCTTCTGCTGCAAGAGAAAATGGCTCACGTAGAAGAGCTGCGTCTCATACATGCTGATATTAATGtgATGGAAAACACTATCAAACAGTCTGAAAGTGACTTGAACAAACTGCTGGAGTCAACCAGACGTCTCCACGATGAATACAAGCCACTGAAAGAACACGTGGATGCCCTGAGGATGACCCTGGGCTTACAGAGACTCCCCGACCTCAGCCAGGAAGAGGAGAAGCTCTCATTGGACTACTTCGAAAAGCAAAAGGCTGAGTGGCAGACAGAACCACAGGAGCCTCCTATCCCAGAATCCTTAGCGGCGGCGGCGGCTGCAGCCCAGCAGCTTCAAGCTGCACGGAAACAGGATGCCAGACAGACAGCGACATTCCGCCAGCAGCCACCTCCTATGAAGGCTTGTCTGTCCTGCCACCAGCAAATCCATCGGAACGCACCGATCTGTCCTCTCTGCAAAGCCAAAAGCCGCTCACGCAACCCTAAAAAACCCAAGAGAAAACCCGACGAGTAACATGCGCAGCTACCAATAACCTCAGAGAAAGCCCGACTAACACACATAACCCCAACAGAAAACAATTTACTTACATAAACGCGTTCACTTGCGCTCTCATGCATGCACAtttccacacatacacacactcactgcacaTCTGTACACCTGAAGGTATATAGTCCTGAAGGAACGGAGCATCTGCAGCCTGATACCCTGACCTCTTATAGTGATCCTGTAGTTAACCCGTCTTCCTGCTTCAGTGGACATGAGGTCtcagtttttcatttcttttttctataaGTGAAACCTCGATATTGTGTTTGTACCGTGTCTGTATTTAGTCCGTAGTGGATATGGATGCTGGTTTAGAAATATCGAAGCGTCCTGTTCTGTGTGGGGTTTAATTCTAGTGCATTAGTTCCAAAGTAAATTCTCTAAAGTGGCTTTAGTGAACAGAGCCGTTCGGACGGTAATCAGTTAACACTTCAACCGATATTTAGTCATTTGAAAGAATTAATAACGGTATGATTTTGCCTatgtcttttaatgttttttccctCACGCTAACAGTGTTTTTCTTGTATTATGTAACCATGGTCTATCCCAGACCATGTCAGTGTTCTAGAATGTCTTGAGGGCCGTTCACACAAGATGTAGATGAAGAGCATTGAAATGGATAAGAACGAGTTTTTAACTTGAAGCGTCTTTAAGAATGCGGTGCTAATGGCAGGAGACGCTGGAAAAAGGCAAACACTCCGCTTACAAAGACCAACGATTAATGCAGACTGAATGCAAAAGCATGTGTGAACAGCCCTTTAGAAGTAGAGTAATTATGGAAGTTGAATGAGAATTCTAAACCTCGAGTTCTTATAGATCTATCATTCAATTTGAGCGAATGAGCtgttatttgtgttttggaATTTGACCCGAGGGGCATTAAGAGCGTGTTATAATCTTCAGTATTGAAtcgttgtgtttgtgttcatctttTCTGAGAGtcagttttttaataattaaaacctGTGAACTAATAAACTTGTGTAACTTTTGTCGAAATGAAATTGTAGAATAATACAGTGTTATCTGATGGATTCGCTTTCTCTCTGTCGCTCTGTCTGGTATTGGCTTGATATGTATCTGGAATTTGACCTTTCACCCATGACCCCTAACAAGCAataatcattctttttttctt

Function

symbol description
zc4h2 Predicted to enable metal ion binding activity. Involved in neuromuscular junction development; positive regulation of neuron differentiation; and spinal cord motor neuron differentiation. Acts upstream of or within neuron development and neuron fate specification. Located in nucleus. Is expressed in nervous system. Human ortholog(s) of this gene implicated in Miles-Carpenter syndrome. Orthologous to human ZC4H2 (zinc finger C4H2-type containing).

NR:

description
PREDICTED: zinc finger C4H2 domain-containing protein

GO:

id name namespace
GO:0021522 spinal cord motor neuron differentiation biological_process
GO:0007528 neuromuscular junction development biological_process
GO:0048666 neuron development biological_process
GO:0045211 postsynaptic membrane cellular_component
GO:0005634 nucleus cellular_component
GO:0030054 cell junction cellular_component
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K24369 ZC4H2; zinc finger C4H2 domain-contaning protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238909.1 False 1945 mRNA 0.43 5 11841530 11845269
XM_043238910.1 False 1938 mRNA 0.43 6 11841464 11845269
XM_043238911.1 True 2017 mRNA 0.43 6 11840476 11845269

Neighbor

gene id symbol gene type direction distance location
las1l LOC107672706,LOC107746236,LOC107663224,LOC107741192,LOC107557109 coding upstream 16865 11817352 ~ 11823611 (+)
gpr83 si:dkey-27p18.2,LOC107746247,LOC107672928,LOC107741287,LOC107597348,LOC107663210,LOC107575892 coding upstream 116003 11717560 ~ 11724473 (+)
LOC122344640 LOC107721539 coding upstream 136957 11701042 ~ 11703519 (+)
LOC122345658 NA coding upstream 140957 11689917 ~ 11699519 (+)
sptbn4a si:dkey-27p18.5,LOC107741189,LOC107733362,LOC107680392,LOC107672682,LOC107565414 coding upstream 159933 11656571 ~ 11680543 (+)
mtmr8 LOC107672736,LOC107746239,LOC107597259,LOC107741196,LOC107557114,LOC107663233 coding downstream 7022 11852291 ~ 11860972 (+)
asb12a asb12a,LOC107746240,LOC107672747,LOC107557116,LOC107741197,LOC107663228 coding downstream 15775 11861044 ~ 11864442 (+)
amer1 LOC107597260,LOC107746241,LOC107672756,LOC107741198,LOC107663227,LOC107557115 coding downstream 19929 11865198 ~ 11871038 (+)
arhgef9a arhgef9a,arhgef9,LOC107741200,LOC107557118,LOC107597261 coding downstream 31696 11876965 ~ 11901271 (+)
tenm1 tenm1,LOC107713050,LOC107557119,LOC107597323,LOC107741271 coding downstream 192179 12037448 ~ 12164936 (+)
G35629 NA non-coding upstream 64984 11773986 ~ 11775492 (+)
G35606 NA non-coding upstream 111875 11728276 ~ 11728601 (+)
G35585 NA non-coding upstream 132703 11707531 ~ 11707773 (+)
G35584 NA non-coding upstream 133478 11706659 ~ 11706998 (+)
G35350 NA non-coding upstream 309232 11530518 ~ 11531244 (+)
LOC122345698 NA non-coding downstream 98168 11943437 ~ 11986820 (+)
G35733 LOC107557098,LOC107663216,LOC107597264,LOC107672815 non-coding downstream 328014 12173283 ~ 12182024 (+)
LOC122345282 LOC107597264,LOC107672815 non-coding downstream 432861 12278130 ~ 12287378 (+)
LOC122345281 NA non-coding downstream 439176 12284445 ~ 12285122 (+)
G35756 LOC107557121,LOC107597264,LOC107672815,LOC107663216,LOC107557098 non-coding downstream 511169 12356438 ~ 12358798 (+)
glra4b glra4b,LOC107741187,LOC107565418,LOC107680382,LOC108442052,LOC108259905 other upstream 187793 11638516 ~ 11652683 (+)
gria3a gria3a,LOC107597231,LOC107672342,LOC107732609,LOC107680378,LOC107733225,LOC107592272 other upstream 537045 11266642 ~ 11303431 (+)
LOC122346180 LOC107597222,LOC107680408,LOC107732624,LOC107592391,LOC107732598,LOC107687664,LOC107747817,LOC107687696 other upstream 690251 11136223 ~ 11150225 (+)
map7d2a LOC107687666,LOC107592282,LOC107599951,LOC107754729,LOC107726367,LOC107672739 other upstream 776030 11046479 ~ 11064446 (+)
senp3a senp3a,LOC107744451,LOC107687680,LOC107599939,LOC107672741,LOC107592295,LOC107726393 other upstream 906723 10926823 ~ 10933753 (+)
smarca1 smarca1,LOC107597262,LOC107672796,LOC107741199,LOC107663213,LOC103034185,LOC105028962,LOC105893234,LOC106603320 other downstream 78959 11924228 ~ 11943110 (+)
G35720 LOC107654642,LOC107597266,LOC107743332,LOC107741203,LOC107557123,LOC107663229 other downstream 403869 12249138 ~ 12255672 (+)
si:ch211-225b11.4 si:ch211-225b11.4,LOC107743340,LOC107597327,LOC107654601,LOC107580265,LOC107735986 other downstream 668744 12514013 ~ 12528790 (+)
iscu si:ch211-191d15.2,iscu,LOC107597282,LOC104937683 other downstream 858083 12703352 ~ 12705245 (+)
LOC122346073 LOC107654625,LOC107597279,LOC107741224,LOC107696048,LOC107727161 other downstream 958520 12803789 ~ 12807351 (+)

Expression


Co-expression Network