si:ch211-283g2.1 (si:ch211-283g2.1,LOC107734371,LOC107591505,LOC107654320,LOC107562197,LOC107667012,LOC108437645)


Basic Information

Item Value
gene id si:ch211-283g2.1
gene name si:ch211-283g2.1,LOC107734371,LOC107591505,LOC107654320,LOC107562197,LOC107667012,LOC108437645
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 31651505 ~ 31659662 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238912.1
ttTAGATTcttataatttcttattatcagttttCCCCTAATTCTGCCAGCGCCCTGAATAAAAGCAGTAAGGAGCATCAGCAGAAGCTTGCCTGTCGCGCACATTCCCGTCCCACGCCTCCCAGCTAATCATTACAGCTCCTAAACAATCATTACACCACTTAAACTGGTAATCGCAGTTTGCTCCCACAGCGCTGAATCTCTCTGAAGAAGCATGGCGGTGGAAGAGGAAGCCGGTAGACCCACATGGAGCAGGCAGATCGAGTTCACTCTGGCTGGGATCGGCTGCGCTGTGGGCCTGGGGAACATCTGGAGGTTCCCGTACCTGTGCTACAGGAGCGGCGGAGGTGCGTTCCTGGTGCCTTACCTGCTGATGCTGGTGGTGCTGGGGATCCCGCTGCTGCACATGGAGCTGACGCTGGGCCAACATCTGAGGAAGGGCCCCGTCCTGGCCCTGGCCAAAGCCTGTCCCCTGCTGAAAGGTGTTGGCATGGCAACGGTGGCCATCTCCTTCATCATGTGCACATACTACAATGTCATAATCACATGGGCGCTGTACTACATGTTCAGCTCTTTTCGGAGCGAGCTGCTCTGGGAAAACTGCAACAACACATGGAACACGGCCAACTGCAGCGACCGTGTGACCAACAGCTCCTCGTCCTCCACCGCCAGCCAGCAGTTCTTCAATTATAAGGTGCTGGAGAGGACCAGCGGTGTGGAGGAGACGGGCATCTTGAGGTGGGAGCTCttcctcctgctgctgctggccTGGATCCTCGTCTACCTCTGCATCTTTAAAGGAGTCAAGTCCACTGGGAAGgtGGTTTACTTCACTGCTCTGTTTCCGTACGTGATTCTTCTGGCTCTTCTGATCAATAATGTGCAGCTGCCGGGAGCCATAGACGGCATCCGCTTCTTCATCATTCCCGAGTGGGACAAGCTGCTCAATGTGGAGgtcTGGATTAATGCAGCAGCTCAGATATTTAACTCCATTGGGATTGGCTTCGGCTCGCTGATGGCGATGGCCAGCTATAACTCCTACAACAACAATGTCCTCAAAGACACTCTGGCCATTTCCATCACGAATTCCCTGACTAGTATTTTCGCAGGATTCGTCATTTTCTCGGCCTTCGGCTACATGTCGCACCTTCAGAATGTGCCGGTCAGTGAAATCGCAGTGGACGGTCCGGGTCTGGTGTTCGTGGTTTACCCACAAGCCTTTGTGACGATGCCCGTCGCTCCTCTATGGGCCATTCTCTTCTTTTTCATGCTACTCTGCCTCGGCCTGGACAGTCAGTTCGCCATGGTGGAGGTGATGGTGACCAGTCTGCTGGACAGCTACAGCAAACCCATCCTCAAGCATCTCAAACGCAAGGAGTTTCTTGTGCTTGTGGTCTGCGGCGCAGCGTTCCTCCTGGGCATCCCTAATGTCATGCAGGTGGGGATCTATGTGTTCCAGCTGATGGATCATTACACGGCTATCGTGTCCATCATGTTCCTGGCCTTTTTTGAGGTGGTTGGCGTTTGCTGGCTCTACGGTGTGAAGCGCCTGTCCAGTAATTTACTGGAGATGACGGGAAAGAGACCCAGCCTCTTCTTCAGGGCGTGCTGGTGGGTCATCTGTCCTGTGTTGATAACGGTTATCCTGGTGTTCTCGGTGATTCAGTTTAAGCCGGCGCGCTATGAGGATTACGTTTACCCGGCGTGGGCTCAGGGCGTCGGGTGGCTCATCGCTCTGGCCTCCATCGTCTGGATTCCTCTCGCAGCCGCGCACACGCTCTGGGTTCTGCCTGGATCCTTCACAGAGAGACTGAAGCTGTCGATCACGCCGTTTTCTCTGGACGACGACTCCGAGAGCCCGTATTACCAGCAGAAAGGAGCCAATATGGAGGTGATCCCCAACATCGCCGTCATCAGCTCAGTCGTACCTCTCTCCGAAAAACCATCCATCCAGACTAACTTATGAACCCTTTTCTTTCATGTCGATATCAATAAAGATTGGCGACCTTC

Function

symbol description
si:ch211-283g2.1 Predicted to enable symporter activity. Predicted to be involved in sodium ion transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane.

NR:

description
sodium- and chloride-dependent GABA transporter ine-like

GO: NA

KEGG:

id description
K05039 SLC6A6, TAUT; solute carrier family 6 (neurotransmitter transporter, taurine) member 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238912.1 True 2009 mRNA 0.54 13 31651505 31659662

Neighbor

gene id symbol gene type direction distance location
LOC122344717 LOC107664759,LOC107725124,LOC107654315,LOC107734362,LOC107562201 coding downstream 37675 31600225 ~ 31613830 (-)
LOC122344719 c1qbp,LOC107725147,LOC107664384,LOC107654317,LOC107734359 coding downstream 53195 31594477 ~ 31598310 (-)
LOC122344718 LOC107725156,LOC107654314,LOC107591470,LOC107734345,LOC100535945,LOC107562196 coding downstream 61108 31568780 ~ 31590397 (-)
srrm3 srrm3,LOC107591468,LOC107734356,LOC107562180,LOC107725131,LOC107654313 coding downstream 83821 31506479 ~ 31567684 (-)
hspb1 LOC107591466,LOC107667824,LOC107725127,LOC107562193,LOC107654311,LOC107734358 coding downstream 148475 31498489 ~ 31503030 (-)
si:ch211-283g2.2 NA coding upstream 1816 31661478 ~ 31667615 (-)
LOC122345089 NA coding upstream 8355 31668017 ~ 31671608 (-)
srrt srrt,LOC107665251,LOC107591506,LOC107725089,LOC107734366 coding upstream 14653 31674315 ~ 31683580 (-)
zgc:153704 zgc:153704,LOC107591480,LOC107562205,LOC107725160,LOC107665866,LOC107654290 coding upstream 73796 31733458 ~ 31735951 (-)
LOC122345662 ralgps1,LOC107666038,LOC107557582,LOC107725136,LOC107654291 coding upstream 100274 31759936 ~ 31857602 (-)
G41034 NA non-coding downstream 2893 31646858 ~ 31648612 (-)
G40995 NA non-coding downstream 145408 31423085 ~ 31506097 (-)
LOC122345708 NA non-coding downstream 153411 31456500 ~ 31498094 (-)
G40996 NA non-coding downstream 156236 31435649 ~ 31495269 (-)
G40842 NA non-coding downstream 371074 31280177 ~ 31280431 (-)
G41019 prdx4,LOC107665442,LOC107591478,LOC107734341,LOC107654298 non-coding upstream 24306 31683968 ~ 31684836 (-)
G41018 LOC107734365 non-coding upstream 32204 31691866 ~ 31695788 (-)
G41037 NA non-coding upstream 52689 31712351 ~ 31732259 (-)
G41047 NA non-coding upstream 64080 31723742 ~ 31904787 (-)
G41051 NA non-coding upstream 138047 31797709 ~ 31798268 (-)
LOC122344987 LOC107591496,LOC107663763,LOC107725109,LOC107734348,LOC107563429,LOC107654309 other downstream 301056 31331349 ~ 31350449 (-)
G40752 hspa5,LOC107686379,LOC107743071,LOC107687227,LOC107567952,LOC107734417,LOC107734415,LOC107686377 other downstream 825147 30817732 ~ 30826358 (-)
G40713 lzts3,LOC107567954,LOC107687254,LOC107574519,LOC795227,LOC107665914 other downstream 858786 30789633 ~ 30792719 (-)
G40711 NA other downstream 918145 30631028 ~ 30733360 (-)
fubp3 fubp3,LOC107689604,LOC107687236,LOC106566971 other downstream 1038364 30590843 ~ 30613141 (-)
apooa apoo other upstream 42791 31702453 ~ 31711737 (-)
G41035 LOC107734367,LOC107665727,LOC107725151,LOC107591476,LOC107654325,LOC563292 other upstream 61608 31721270 ~ 31722906 (-)
tnca zmp:0000000846,LOC107715542,LOC107557573,LOC107591511,LOC102306937,LOC107725145 other upstream 454234 32113896 ~ 32174064 (-)
LOC122346090 LOC107704013,LOC107725152,LOC107748063,LOC107654332,LOC107557589,LOC107594564 other upstream 554369 32214031 ~ 32293782 (-)
LOC122346085 LOC107748069,LOC107679343,LOC107594586 other upstream 623875 32283537 ~ 32314631 (-)

Expression


Co-expression Network