rom1a (LOC107758165,LOC107567283,LOC107698544,LOC107755654)


Basic Information

Item Value
gene id rom1a
gene name LOC107758165,LOC107567283,LOC107698544,LOC107755654
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 26796255 ~ 26800046 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238940.1
ATGGTTGTGGGTAAGATGAAGTTCACTTTTCAGAAAAGGGTCAAGCTGGCCCAGGGTTTGTGGCTGCTCTCATGGTTGGCAACTCTGGGTGGAGCGGTTACCTTCACTTTAGGATGCTTCCTAAAGACTGAGCTTCGAAGGAGGGGAGAGGTAATGGACAACACAGACATCCACTGTGTGCCCAACACCTTGATGATTGTGGGTCTGGCTTCGATGGGCATCAATTACTTTGCCAGTCGAATCTGCCAGGATGCTCTAGATCCTGGGCGTTTCCCACGATGGAAGACCTATCTGAAGCCCTATTTTGGATGCTCAGTATTCTTCACCTCCCTCATGCTGATTTCAGTCATCTTGAGTTACGCCATGAAGGGCAGCCTGGAGACCTCCCTGAAAATCGGCTTGAAGAATGGCATCCGCTTCTACAAGGACACCGACACCCCAGGCCGCTGCTTCCAGAAGCAGACCATTGATCGCCTTCAGATGGAGTTCCAGTGCTGTGGTAATAACGACTACAAGGATTGGTTTGAGGTGCAGTGGATCAGCAACCGTTACCTGGATTTCAGCACTAAGGAAGTTAAGGACCGCATTAAGAGCAATGTGGATGGCCGTTACTTGTTTGACGGTGTGCCCTTCAGCTGCTGTAACCCTAGTTCTCCTAGACCCTGTATCCAGTACAAAATCACCAACAACACCGCCCACTACAACTACGACCACCAGACCGAAGAACTCAACATCTTCATTCGTGGTTGCAGAGAAGCCCTGGTCAACTATTACATGGGACTGATGAACACTATTGGCGCAGTggttctgtctgtctttctgcttCAGTGCTCAGTGTTGGCCAGTGTTCGTCTCCTGCAGACGTCTTTGGAGGCCGTCGCTGGACAGGAGAACGTGGAGATTGAAACCGAGGGCTACTTACTTGAGAAAGCAGTGAAGGAGACCTTCATGGAGTATATGGATCCTGTGCTGAAGCTCCTGTTGCTGAACCAGGTAACCGCTCCTGAAGCCAAACCGGGAGCAGGGGCCACTGGAACCACCACCAGCTAA

Function

NR:

description
PREDICTED: peripherin-2-like isoform X1

GO:

id name namespace
GO:0007601 visual perception biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238940.1 True 1050 mRNA 0.51 4 26796255 26800046

Neighbor

gene id symbol gene type direction distance location
rps6ka4 rps6ka4,LOC107758164,LOC107698546,LOC107567284,LOC107702937,LOC108427766,LOC103040978 coding downstream 7237 26769931 ~ 26789018 (-)
flrt1a LOC107695997,LOC107741023,LOC107702935,LOC107564076,LOC107755656,LOC107571526 coding downstream 76509 26673097 ~ 26719746 (-)
stip1 stip1,LOC107564074,LOC107674894,LOC107571522,LOC107755657,LOC107702934 coding downstream 148720 26639154 ~ 26647535 (-)
im:7154036 LOC107730539,LOC107674895,LOC107564073,LOC107755658,LOC107702932,LOC107571525 coding downstream 158390 26626193 ~ 26637865 (-)
kat5b kat5b,kat5a,kat5,LOC107597226,LOC107592273,LOC107732605,LOC107680373,LOC107687657,LOC108427799 coding downstream 171239 26615142 ~ 26625016 (-)
si:dkey-273o13.3 LOC107758159,LOC107567285,LOC107698543,LOC107755655 coding upstream 2338 26802384 ~ 26809937 (-)
cdca5 cdca5,LOC107567277,LOC107698540 coding upstream 16874 26816920 ~ 26820637 (-)
clip1a clip1,clip1a,LOC107567280 coding upstream 21252 26821298 ~ 26851848 (-)
zcchc8 zcchc8,LOC107674788,LOC107740086,LOC107752243,LOC107560308 coding upstream 53990 26854036 ~ 26859879 (-)
rsrc2 LOC107740083,LOC107674791,LOC107752237,LOC107702941,LOC107571524 coding upstream 63359 26863405 ~ 26869594 (-)
LOC122344941 NA non-coding downstream 422433 26372619 ~ 26373822 (-)
G39585 NA non-coding downstream 642552 26153465 ~ 26153703 (-)
G39579 NA non-coding downstream 677172 26118474 ~ 26119083 (-)
G39574 NA non-coding downstream 1012664 25782979 ~ 25783591 (-)
G39572 NA non-coding downstream 1067785 25728237 ~ 25728470 (-)
G39712 NA non-coding upstream 76544 26876590 ~ 26883175 (-)
G39738 LOC107705276,LOC107586737,LOC107671348,LOC107663665,LOC107721875 non-coding upstream 281955 27082001 ~ 27084786 (-)
LOC122344810 LOC107662059,LOC107548517 non-coding upstream 315921 27115967 ~ 27146962 (-)
LOC122344809 LOC107671984 non-coding upstream 327083 27127129 ~ 27128456 (-)
LOC122344808 LOC107671984 non-coding upstream 340369 27140415 ~ 27142658 (-)
LOC122344921 NA other downstream 1227569 25561974 ~ 25568686 (-)
G39413 LOC102215562 other downstream 1513969 25281886 ~ 25282286 (-)
LOC122345923 NA other downstream 2037587 24754202 ~ 24758668 (-)
naa38 naa38 other downstream 2047645 24746672 ~ 24748610 (-)
anapc2 anapc2,LOC107559737,LOC107730340,LOC107746468,LOC107683706,LOC107595991,LOC107684355 other downstream 2202139 24587724 ~ 24594116 (-)
LOC122345426 smpx,LOC107705278,LOC107671350,LOC107590224,LOC107663668,LOC107586736,LOC107721880 other upstream 299769 27099815 ~ 27107385 (-)
isca1 isca1,LOC107702919,LOC107662049 other upstream 582875 27382921 ~ 27398741 (-)
LOC122344874 NA other upstream 1085995 27886041 ~ 27895454 (-)
G40080 pappaa,pappa,LOC107556005,LOC107558864,LOC107739977,LOC107675511,LOC107728218 other upstream 1455782 28255828 ~ 28264704 (-)
LOC122345120 LOC107728794,LOC107696375,LOC107590009,LOC107739482 other upstream 2523936 29323982 ~ 29326115 (-)

Expression


Co-expression Network