LOC122345124 (si:zfos-128g4.1,LOC107675886,LOC107577831)


Basic Information

Item Value
gene id LOC122345124
gene name si:zfos-128g4.1,LOC107675886,LOC107577831
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 30520606 ~ 30523419 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238953.1
CGTCCCGCTTCTGCGGAGGACGCGCGTGCGTGTCGCGCACTTCTGACGCGACGGCGTGCGGTTCCGTTCGACGCGCGTCTCGGCAGCGCGTCAATAAACTCAATGGCCGTGACCGAGAAACTGATCCAGAGCGTCCACGCTTACCCGGTGCTTTATAACGTGTCGCTGCACGATTATCGCAGCGCGGAGCGGCGCGTGAAAGCGTGGAGGGAGGTCGCCGCGTCCGTCGGTCTCTCCGTGGTGGAGTGCAAGCGGCGCTGGAAGACGATCAGGGACCGGTACATCCGCGAGCGGAGGCTGTGTCAGCTGCGGAGGGAAGAAGGCGGCCGGAGGCTTCATTTCTGGCCACACAGAGAAAGCCTGTCGTTTCTGGACGCTCACGTCAGGAAGAGGAAGCGTCTCGGTGAGCAGCCGGACGACTCTCTGGACGAGTCCAGCGGCGGAGACTCCAAGCCCGGCTCGGACACGGTCCAGGAGCGTCCGCTCAAAGCTCTGTCCATCGTCAAGCCGGTGACCCAGCTGCTGCTGACCGGTCTGCCTCCGGGCCTGAAGCTGCCCCAGCCGCCCGCTCCGAGCCCAGCGCCGCCGGCCGTCACCGGAGAGATCGACGGCAAGACGGAGAAAGACAAGGAGAAGGCCTTCGACGAGGACGAGCTGTTTCTCCTGAGCTACGTCCCTGCCCTCAAAAGACTGACGCCGCAGAAAAGAGCCGCCGTCAAGATGCAGATCCAGCAGATCATGTTTGACGCAGAGTTCAAAGAGCAGCTCTGACCCCGGATGTGCTTCCTTTAGTCACGTACCGCCACAAGAACTAGCTCTTCAGCTTTTTCAAACgcaacatttctttcttttttctctaaatgctcaccaatttttttttttataaagatacagcaaaagcagtgatattgtgaaatatttttactatgtaaaatgtctgttttctatgtgaatgtTGAACtgtagtttatttctgtgaattctttcagtcttcagtgtcacgtgaaattattagaatatgcttatttgctgctcaagaaacatttcagatttttatcaATGTAGAAAACAGTTTAGtccatttttttcaggattctttttatatataacttgtGGGGGGTGGCAtagaaaaatatacttttatttaactaaGATGCTTTAAAAAGTGACTCAATGGCTCACAAAAAACGTTAATAATGTAGCAAAGGATTTCTTTTTCAgctaaatgctgtttttcaaaACCTTCCATTTGTAAGAAACCTGAAAAAGTCTAATTGGctgttttcaacaaaataatgcatgttttttgagcagcaaatcagaatattagggACTAATCATTATTGGACTAATGATACggaaaaaaatcagctttgaaatcacagaaataaatgaaagctgaGGTTCGGTGAGCAGAAACTTCTCTGGTAGTTTAAGTAGAAGTTAGTTTGTCGTGACGCTATTCGTtgaatgcatttctaaaaatattttcagcattaattGTCAGATTTGCTCTACTGCTAAAGAGAGAATAAAATGTGTGCCAACGACTAAA

Function

symbol description
si:zfos-128g4.1 Predicted to enable DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be part of transcription regulator complex. Predicted to be active in nucleus.

NR:

description
PREDICTED: uncharacterized protein LOC107675886

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238953.1 True 1555 mRNA 0.48 2 30520606 30523419

Neighbor

gene id symbol gene type direction distance location
mbd2 mbd2,LOC107717343,LOC107565141,LOC108438699,LOC108260323,LOC105902559 coding downstream 9327 30491031 ~ 30511279 (-)
trabd2a trabd2a,LOC107558059,LOC107570885,LOC107717329 coding downstream 356589 30122226 ~ 30164017 (-)
june LOC107687249,LOC107721038,LOC107563389,LOC107684195,LOC107735627 coding downstream 486394 30027830 ~ 30034212 (-)
thap1 thap1,LOC107563391,LOC107684196,LOC107687269,LOC107558071 coding downstream 508597 30006999 ~ 30012009 (-)
LOC122344968 mob3b,LOC107558072,LOC107563392,LOC107721040,LOC108414757 coding downstream 514637 29997436 ~ 30005969 (-)
LOC122345715 LOC107687242,LOC107717337,LOC107558070 coding upstream 12415 30535834 ~ 30537915 (-)
LOC122344973 NA coding upstream 17078 30540497 ~ 30542440 (-)
LOC122344972 NA coding upstream 52869 30576288 ~ 30580328 (-)
ass1 ass1,LOC107740768,LOC107687233,LOC107689608 coding upstream 98785 30622204 ~ 30644747 (-)
surf4 surf4,LOC107740232,LOC107689610,LOC105890423,LOC103376134 coding upstream 122867 30646286 ~ 30652310 (-)
G40684 NA non-coding downstream 2151 30516065 ~ 30518455 (-)
G40680 NA non-coding downstream 7636 30504796 ~ 30512970 (-)
G40671 NA non-coding downstream 29728 30490514 ~ 30490878 (-)
G40677 NA non-coding downstream 36364 30484016 ~ 30484242 (-)
G40676 NA non-coding downstream 38380 30482021 ~ 30482226 (-)
G40670 ythdc2 non-coding upstream 40698 30564117 ~ 30564377 (-)
G40672 NA non-coding upstream 42265 30565684 ~ 30566156 (-)
G40698 NA non-coding upstream 43832 30567251 ~ 30570100 (-)
G40701 NA non-coding upstream 66778 30590197 ~ 30590640 (-)
LOC122345983 NA non-coding upstream 185354 30708773 ~ 30710678 (-)
rnf170 rnf170,LOC107721034,LOC107687247 other downstream 427030 30087966 ~ 30093576 (-)
LOC122344966 LOC107749532,LOC107566852,LOC107742171,LOC107565644,LOC107690083 other downstream 591931 29924702 ~ 29928675 (-)
eng LOC107562335,LOC107704777,LOC107741503 other downstream 865545 29614719 ~ 29655061 (-)
G40182 brinp1,LOC107715673,LOC107674904 other downstream 1030402 29460585 ~ 29490204 (-)
LOC122345120 LOC107728794,LOC107696375,LOC107590009,LOC107739482 other downstream 1194491 29323982 ~ 29326115 (-)
fubp3 fubp3,LOC107689604,LOC107687236,LOC106566971 other upstream 67424 30590843 ~ 30613141 (-)
G40711 NA other upstream 107609 30631028 ~ 30733360 (-)
G40713 lzts3,LOC107567954,LOC107687254,LOC107574519,LOC795227,LOC107665914 other upstream 266214 30789633 ~ 30792719 (-)
G40752 hspa5,LOC107686379,LOC107743071,LOC107687227,LOC107567952,LOC107734417,LOC107734415,LOC107686377 other upstream 294313 30817732 ~ 30826358 (-)
LOC122344987 LOC107591496,LOC107663763,LOC107725109,LOC107734348,LOC107563429,LOC107654309 other upstream 807930 31331349 ~ 31350449 (-)

Expression


Co-expression Network