ranbp1 (ranbp1,LOC107684983,LOC107752129,LOC107597301,LOC107672632,LOC107741249)


Basic Information

Item Value
gene id ranbp1
gene name ranbp1,LOC107684983,LOC107752129,LOC107597301,LOC107672632,LOC107741249
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 5430566 ~ 5435131 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238965.1
AGTGCGCGCTGACGTCGTGCTGACGTCACCGCCTCTCTTCTCCGGTTAGGCGCGCGCGAAAACAGCGGAGTGAAATCTCACGAGCTGACGCTGATCAAACCGTACAGAAACTCTCCCTAATCTCCAAACATCTGCAAAAGCCATGGCTGACCCAAAGGAGGCACAAGATGATCACGAGGCGTCCACAGAAAATGTTGAGGACTCCAACCACGACCCTCATTTTGAACCCATCGTCTCGCTGCCTGAGCAGGATGTCAAGACCCTAGAGGAAGACGAGGAAGAGCTTTTCAAGATGAGGGCAAAGCTGTACCGTTTCGCCAGCGAGAACGATCCCCCGGAGTGGAAGGAGCGCGGGACGGGTGACGTCAAACTCCTGCGACACAAAGAGAAGGGTTCCATCCGCCTTCTCATGAGGAGAGACCGTACCCTCAAAATCTGTGCCAACCATCACATTATGCCGTTGATGGAGCTGAAGCCCAATGCAGGCAGTGACCGGGCCTGGGTGTGGAATACACATGCTGACTTTGCAGATGAGAAACCCAAACCAGAGCTGCTGGCCATTCGATTCCTCAATGCAGAGAATGCACAGAAGTTCAAGATGAAGTTCGATGAATGCAAAGAAGAGGTCAGAAAGTCCCTAGAAGGTAGCATGAACAGTGCTAACAAAGTGGCGGAGAAGCTGGAGGAGCTGTCTGTGAATGAGGACAAGACAAAGAGTTCAGGAGACAAGAAAGAAGAGGCgaaggaagagaagaaagaggagaaggctgctgaggaggagaagaaatgAGCCCAGGAACGTAGCTTCATACGGATCCTCCACTTGCCATTTTCCCCTTTTCTACAACAgactctgaaaatgaaaaattggacacttgttttctttttggcCTCGACTTCACAAGACCTTGGTGCCACTCTTAATGCGTCCATTTCTCAATCATTAAGATGTTGTGAGCTTTTGTCCCATTCACAAACTCTCATATCGcccttcatttttttccccccccatACATTGTGGACCAGTCATCAGTCAtcatgtatttgtgtatttacatgACATGCTATGATACAAGGCTTGTGCTATTGATTGATTCCCACATTGGGTAacctcttttgttgtttttctttttgtacttTAAAGAGTTATATTGCGAGTGTCTAGATGAGCACTGTCTGATAAGAGAGCGGGCTGTATGAGTTGATAGGGAGAATGAGTATCTGAGATCTTCGACTTTTTCCTTACAATAAAGTCACACGAGGAACATTTGA

Function

symbol description
ranbp1 Predicted to contribute to GTPase activator activity. Predicted to be involved in positive regulation of mitotic centrosome separation. Predicted to act upstream of or within intracellular transport. Predicted to be part of nuclear pore. Predicted to be active in centrosome and cytoplasm. Orthologous to human RANBP1 (RAN binding protein 1).

NR:

description
PREDICTED: ran-specific GTPase-activating protein isoform X1

GO:

id name namespace
GO:0046907 intracellular transport biological_process

KEGG:

id description
K15306 RANBP1; Ran-binding protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238965.1 True 1272 mRNA 0.48 6 5430566 5435131

Neighbor

gene id symbol gene type direction distance location
golga3 LOC107684982,LOC107595916,LOC107741281,LOC107672616 coding downstream 1098 5412669 ~ 5429468 (-)
ankle2 ankle2,LOC107597302,LOC107684979,LOC107672626,LOC107741250,LOC107595914,LOC107752143 coding downstream 20072 5398894 ~ 5410494 (-)
poli poli coding downstream 36937 5388819 ~ 5393629 (-)
LOC122345752 bri3bp,LOC107684981,LOC107597359,LOC107672602,LOC107595913 coding downstream 42241 5383555 ~ 5388325 (-)
aacs aacs,LOC107672615,LOC108255473,LOC107684991 coding downstream 50297 5351446 ~ 5380269 (-)
LOC122345133 LOC107752131,LOC107684984,LOC107595918,LOC107672624,LOC107741247 coding upstream 846 5435977 ~ 5454756 (-)
foxn4 foxn4,LOC107654613 coding upstream 185938 5621069 ~ 5629286 (-)
kctd10 kctd10,LOC107597295,LOC107595924,LOC107672630,LOC107752136 coding upstream 213124 5648255 ~ 5653029 (-)
mmab LOC107752154,LOC107597358,LOC107654603,LOC107672637,LOC107741242,LOC107595926 coding upstream 233662 5668793 ~ 5671129 (-)
trpv4 trpv4,LOC107752140,LOC107741238,LOC107654595,LOC107672638 coding upstream 385221 5820352 ~ 5842997 (-)
LOC122345808 NA non-coding downstream 261317 5142578 ~ 5169249 (-)
G33334 NA non-coding downstream 354532 5075761 ~ 5076034 (-)
G33333 NA non-coding downstream 376663 5034111 ~ 5053903 (-)
G33332 NA non-coding downstream 396612 5032563 ~ 5033954 (-)
G33330 NA non-coding downstream 402751 5024945 ~ 5027815 (-)
LOC122344984 LOC107597340,LOC107752133,LOC107684988,LOC107672606 non-coding upstream 139033 5574164 ~ 5597629 (-)
LOC122344983 LOC107684988,LOC107597340,LOC107752133,LOC107741245,LOC107672606 non-coding upstream 152914 5588045 ~ 5595174 (-)
G33409 LOC107684993,LOC107597297,LOC106585658 non-coding upstream 166278 5601409 ~ 5602204 (-)
G33423 acacb,LOC107752147,LOC107654593 non-coding upstream 183134 5618265 ~ 5620705 (-)
G33434 NA non-coding upstream 218949 5654080 ~ 5654764 (-)
G33175 NA other downstream 807508 4622490 ~ 4623058 (-)
LOC122346168 srrm4,LOC107720865,LOC107702227,LOC107561260,LOC107656798 other downstream 1237485 4144856 ~ 4193081 (-)
piwil2 piwil2,LOC107560971,LOC107707823,LOC107702219 other downstream 1531988 3878650 ~ 3898578 (-)
coq5 coq5,LOC107560969,LOC107707852,LOC107656810,LOC107561264,LOC107702223,LOC107707851,LOC107560965,LOC101158254,LOC107755815,LOC107561265 other downstream 1677802 3744675 ~ 3752764 (-)
G32908 sema4c,LOC107697240,LOC107708238,LOC107699920 other downstream 2470389 2951462 ~ 2960177 (-)
G33758 LOC107596916,LOC107710760,LOC107700938,LOC107587412,LOC107693817 other upstream 1389040 6824171 ~ 6826182 (-)
usp20 usp20,LOC107691016,LOC107693839,LOC107710745 other upstream 1487715 6922846 ~ 6943203 (-)
G33998 LOC108444092 other upstream 1947215 7382346 ~ 7397153 (-)
LOC122345606 LOC107712378 other upstream 2271839 7706970 ~ 7711824 (-)
si:dkey-220k22.3 NA other upstream 2283434 7718565 ~ 7721758 (-)

Expression


Co-expression Network