lamc3 (lamc3,LOC107596886,LOC107718641,LOC107700933,LOC107757520,LOC107570860)


Basic Information

Item Value
gene id lamc3
gene name lamc3,LOC107596886,LOC107718641,LOC107700933,LOC107757520,LOC107570860
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 6282774 ~ 6343615 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238966.1
TGTATGAAGCGTGTGTCCTGGGATTCAAAGGGGAAACACATGCTGACAGAAAAGGGGAAAGAAAGCATTGAGGACAAAGACTGAGCATGGaggaatatttcattttctttaaacctTTTCTTTCTTAACTGAATGCATGCGTGCATGCAACTCGATTGAAACCTTATTGCTGCATGCCAACTCAGAGAACAGTTcctgcgtaaaaaaaaaaaaatgtatctatctgcatgtgtgtttgcTATATCACATACTTTATTATGCTTGCCTTTGAACGCTGAACTGCTGAACTTCCCTTGAAGTTTTTCCCTGTAGCAAGTGGCTCTGATTTTGATTATTTGCTAGACTTGTTTTCGTTCGCTCGGCTCCTTTGAAGTTGTCTCTGTTTTAGGCTGTTGCATAGAAGGATGGATTCCTCTACACTTCACTCtcttttatttctgcttttcacCTTCTTCTCTCATGCTATCGCTGGAATGGACTCTTGCTACGATGAGAAGGGCGTCCCGAGCCGCTGTTTGCCTAAATTTGAAAATGCGGCCTTCAATCGCACAGTGATCGTTTCAAATGTTTACGGTATCCCACCTGAGGACTACTGCATGCAAACAGGGTCCACACGGTCATGTCACTTCTGTGATGCCATGGACTTGGAACTGAATCACAACGCTACTTACCTGACAGACTTCCACACAGATGAAGAGCCCACCTGGTGGCAGAGCCAGTCCATGTTCTATGGAGTTCAGTATCCTACTTCAGTCAACATCACACTGCATCTTGGCAAGGCCTTTGAGATCACATATGTCCGTTTGAAGTTCTACACCAGCCGACCAGAGAGCTTCGCCATCTTTAAGCGCACCGATGAGAACGGACCATGGCAACCGTACCAATACTACAGTGCTTCCTGTCACAAGATGTACAGGAGGCACAATAAGGGCTTCATACGTCCAGGAGAGAACGAAAGGACGGCACTCTGCACGGATGAATTTAGTGACATCTCACCTCTAACCGGCGGAAATGTGGCCTTCTCCACATTGGAGGGACGACCCAGTGCCTACAACTACGACCAGAGTCCTGTGTTACAGGACTGGGTGACAGCTACTGATATCCTCATCTCTCTGGACAGACTGAACACTTTTGGAGACGAGTTCTTCAAAGATCCCAAAGTGCTTCGTTCATATTTTTATGCCATATCCGATTTCTCCGTGGGGGGCagGTGCAAGTGTAATGGCCATGCCACTGACTGCTTCACCAATGAGGAGGGGCGTTTGGTGTGTGCTTGTGAGCACAACACCGCAGGGGTGGACTGTCAGCACTGTGCCCCCTTCTACCAGGACCGGCCGTGGACACGGGCCACCGCCGATTCAGCCAAccagtgtgtgaGGTGTAACTGCAGCGGTCTTGCTGATGAATGCGTGTTTGATGCTGAGCAGTACCGCAGCACAGGAAGTGGGGGGCACTGTGTCGGCTGCAGGGAAAACACAGCTGGCCCTCACTGTGAGAGATGCAGGGAGAACTTCTTCAGATCCTTAGCCGAGCGGACATGCCAAAACTGTAACTGTAATGCAATGGGCTCTGTGAGTTTGCAGTGTGATGCAGAGGGAGTGTGTATGTGCTGGCCAGGTGTGTCTGGTGTGAAGTGTGACATTTGCAAGTCCGGTTTCCATTCTCTCGGCCCTGGCGGATGCAGGTTGTGTGAGTGTGATAACAGGGGCAGTTTAGGAGTGTGTTCAGTCGAAGACGGACGCTGCCATTGCAAGACTAATGTGGAGGGTCAGTCCTGCAACAGGTGTAAACCAGGCTCTTTCAACCTCCAACTGGGAAACCCAGATGGctgtaaaaaatgcttttgctttGGACACTCCCTCGCCTGTTCGTCCTCCAATCAGTACATGGCGATTAATATTACTTCAGACTTCCTAGAAGATCCAGATGGCTGGAAGGGTGTGTTCACTACAGGGCAAGAACAATCTCTCATCTGGAAGGAGGGAGAAGTCTATCTGTTGCCCTACAGAGAGGAGAATGGCTTCTACAGAGCACCTGATAAGTACCTGGGGAACAGGTTGCTAAGTTACGGACGGACCCTTAGCGTGTCATTTACAGCTGAGCTGGAGGAACTCTTGCCCAGAAGTGTGACTGTGATGCTTGAGGGCTCCGGAGTATCTGTTACTGCTGATTTGTACTCACAACAGGAGACTTATTCCTCATTGGAGAAGATGCCCATCAACACCTTCACTCTCAGGTTAACAGAGAAGAACGTAAATCCATCTGTTGCCCCATTTGAGTTTCTCCGAATGCTTTACAATCTAACTGCACTACGTATCAGCAATGCAGGCGGCCAGAACTACACCTCCCAGCTCTCCAGGGTTAGCCTTGAATCTGCAGTCCGCACAAACTACAATACGGCTCCGCATGTTTGGTGGGTGGAGGAGTGCACTTGTCCTGTAGGATTCACTGGGCAGTTCTGTGAACACTGCGCTCCTGGATTCACCAGAGAAACCCCTAACGGCGGACCCTTCTCCCATTGTGTACCTTGCAGCTGCAATCAACATGGGACCTGCCATCCTGAGACAGGTGTATGTGACTGCAGAGATTTCACCACAGGTCATTATTGTGAGCTTTGCGAAGATGGTTACTATGGCAATGCGCTGACTGGCAGCCCAGGCGACTGCTTACCTTGTCCTTGTCCAGATCACACCACCTGTGCCCAGGTGCCAGAGACAGGGGATGTGGTTTGTACCAACTGTCCAACAGCCCAAAGGGGTGTACGGTGTGAATTATGTGAAGATGGTTTCTATGGCAACCCTCTGGGCTGGGGAGGCAAAGTGCAACCGTGTTTGAGGTGCGAGTGTAATGGGAACGTGGATCCCAATGCAGTTGGTGTGTGTGATCACATGACTGGACGCTGTCTGAAATGCCTGGGACATACGACCGGGGACCATTGTGAAAAATGCAGATCGGGTTACTACGGCAACGCTTTGGCCAATGAGCTCAATCCAGAGCGAAAGTGCAAACCTTGCGCCTGTAACGTGGCTGGGACATCGGGATCGCCGAACGACTGCCACCCGGATACAGGAAAATGTGTATGCCTGAGTCACGTGACAGGGAGAGACTGTGGACGGTGTGAAACCGGCTATTTCAACCTACAGCCAGGCTTGGGCTGCGAGATGTGTAACTGCAACCCCATTGGCTCCTCCTCTTCGGCGTGTCATCCGGTCACGGGACAGTGTGTGTGTCGAACAGGTGTGGAGGGGCAGTCGTGTGACACTTGTCGAATGGGATTCTTTGGTTTCTCCTCTAGAGGCTGCAGAGCATGTAATTGTGACCCCATGGGCTCGTCCTTGATGCAGTGCCATGACAACGGGACGTGTTCTTGTCGCCACGGATTTGTTGGTTATAAGTGTGACAAGTGTGAACTGAACTACTACCAAAGCCGCCTGACCCACCAATGTGAGGAGTGCCCTGTGTGCTACAGCCtcatcagagaccagGCCAGTAAACTGAAGGCCAGACTGCAGGAGTTGGAGACGCTGCTCAGCAGCTATGACTGCAATAGATACAGTCGGCATTATCGTGGACGCCAGCAGCACAGACACCAATACACCGGCCTGGACAATCACATACAGAAGGACCAAGTTGAAGACTATCTGCCCAATGCCCTGGAAGACCTCCTAGCTATTCAAGAGGCTCGTGAGGCCTTCATTAAGCAGTTCTCACAGCTGGAAACATCTGCCCAGACCTTACAGCTGCAGCTGCGTAGCATTGCAACAGCATTGAACTGCAGCTTAACAGACAGCGGAGAAGTTAGAGAACAAGAACAGACTCCGAAGGGTGAAAACGAGTGTGAAGAGCTTGGTGACACTTTATCCGCTGCTCTGAATATGCAAGGCCAGCTTAAGAAGATGACTCTTGACCTTAACAGCATGGCCATCCCGCCTGTAATCCCTAAAGAACCAAACAAATGGAACACCATAGTGAATGAGTCCGAGGTGCTAGCGAAAAGTCACACAGACGCTGCAGCTCACATAGAGCGGATAGCAGAAGATGCCTTTAAAATGGCTAACAGAACCTATTCACAGCTAATCACGTTACTGGAAGACAACTCCACAGAGTCCTATGTACAGGATCTCACAGAGAAgctGGAGGAGATGCAGCGGTTGAAGGAGAGTCTGACTCTTGAGGTTAATGAGACCTTAGTGACACACCTGTCGCTTCAGAGCCGCAACTCCGAAATAGCCGCCATTTTAGAGAATATCACCGCCTCGCTGTCTGACCTACGCAGAACGGATGGCACTTTCGGCCTCACAGCGCAGGAGTCCAATATAACGTCTTTCTCGCAGACGCTTAATCAAACAAATGTAACGGCAACCCAGGATCCTGAAATCGCAGAGATTAAGGACCTGATGAACAGGACAGCTGAGTTGGATGTTTCTGTCCAATCCCAAGAACATTTGATAAATAAGACCATGGAGGAAACACAGCCTCACGTGGACAGTGTTGAAAAACACCTGAAAACCGTTCAAGAGCTCAAGCAGCTGACGGATGTGGCTGAGGGATTTAGGGTGTCAGCCGTCTCCTCTGTGGTGACAGGGAAAGAGGTTGAGGCGGAGATCCTGTCTTTACAGAAGGGTCTGGAGGACGTGGAGCAAGACTGGCCTCAGCTGCCCACATATAGCAAAGGATatctggagagagagaaggggctAAATGGGAAGACCCTGGTGGAAGTGAAAAAAAGAGTCAAGCTGACAGAGAGAATGATCAAGCCTGCGGTGGAGAACGCTACGGCTGTGAGCAGCACAGCTAAACAAGCCCAGGAGTCTGCAGATGCGGTGGCTAAAGATGCCAAAGCGTCCCTCACGCAGGGGAAACGGACTAAGCATGCATCTGGACAGTTGCGCTCAGCTGCGGACACCACCCTGGAGCGGTTGACTGAGCTGGAAAGCCGAGCTTCACGGAAACAAGAAGCCGTAGAGGGAGAGGAGGACATCCAGCTTTCTTCAAGGAGTGTGACAGACAGCATGGAGACGGCCAAGAGTCAGCTGGAGTCCTTTACAAACACGCTAACTCTGCTCCTTAAACAACTGGATGCTAATGCGGCGCTGGAGAGCTATGATCGCATCCTGAACGAGACGGCAGCCCGTCTCCGCGTTCTCCAGGGTGCTGTGGAGAGTCCGTCTCTCACCGGAAAGATTCAGAGGCTCCACGGCGCTGCGCGCGATCAAGAGAAAGAGCTGCGGCATCTCGAACAGAGCCTGCAGGAGCTACGAGAAGAAAGAGACAGTCTGACAGACATCGCTCAGAACTTGCCTAAAACATGCCCACAAAAAGGGCACTAAGGGGAGGAAGAAGTCCATCGCTTATCTAGTCTTTTAGAGAGACATTGGGGTAGCTCAAAAGGAGTTAGTCGCCTCAGAAAATCTGAATCAAAGGAAGCTGAAGATCAAAAAACCTCTGAAATCCCCCTTTCCCGTTCCTCTTTCCGCTGCGTCTTGTTATAAAAGCAATACTGAACGTATTAATgacacattaaaaagtaaattcttTATAA

Function

symbol description
lamc3 Acts upstream of or within motor neuron axon guidance. Predicted to be located in extracellular region and membrane. Predicted to be active in basement membrane. Is expressed in several structures, including fin bud; myoseptum; nervous system; optic fissure; and vasculature. Orthologous to human LAMC3 (laminin subunit gamma 3).

NR:

description
laminin subunit gamma-3-like isoform X2

GO: NA

KEGG:

id description
K06247 LAMC3; laminin, gamma 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238966.1 True 5545 mRNA 0.50 28 6282774 6343615

Neighbor

gene id symbol gene type direction distance location
aif1l aif1l,LOC107718642,LOC107570864,LOC107757519,LOC107596876 coding downstream 1379 6265737 ~ 6281395 (-)
gfm2 gfm2 coding downstream 19472 6255418 ~ 6263302 (-)
enc1 enc1,LOC107655934,LOC107757521,LOC107570861,LOC107700930,LOC107596864 coding downstream 38956 6232266 ~ 6243818 (-)
ankra2 ankra2,LOC107757524,LOC107655931,LOC107596806,LOC107718646,LOC107700928,LOC107596181 coding downstream 183073 6096157 ~ 6099701 (-)
foxd1 foxd1,LOC107598200,LOC107718663,LOC107700903,LOC107596217,LOC107757501 coding downstream 193218 6086801 ~ 6089556 (-)
ttll11 ttll11,LOC107700937,LOC107596909,LOC100002237,LOC107693816 coding upstream 419521 6763136 ~ 6792026 (-)
LOC122344933 NA coding upstream 484500 6828115 ~ 6830827 (-)
LOC122345679 NA coding upstream 492268 6835883 ~ 6839683 (-)
LOC122345680 LOC107710746 coding upstream 497103 6840718 ~ 6842727 (-)
ptges ptges,LOC107710751,LOC107693847,LOC107598231,LOC107691017,LOC107726289,LOC107587481 coding upstream 574250 6917865 ~ 6921619 (-)
G33615 NA non-coding downstream 104103 6178172 ~ 6178671 (-)
G33612 NA non-coding downstream 108661 6173847 ~ 6174113 (-)
G33610 NA non-coding downstream 110362 6172144 ~ 6172412 (-)
G33549 NA non-coding downstream 299971 5969242 ~ 5982803 (-)
G33544 NA non-coding downstream 323561 5953276 ~ 5959213 (-)
G33681 NA non-coding upstream 265834 6609449 ~ 6611492 (-)
G33683 LOC107588773 non-coding upstream 268125 6611740 ~ 6613055 (-)
G33738 NA non-coding upstream 415294 6758909 ~ 6847805 (-)
G33768 NA non-coding upstream 492344 6835959 ~ 6858383 (-)
G33791 rpl7a,LOC100194725 non-coding upstream 605929 6949544 ~ 6952310 (-)
G33175 NA other downstream 1659716 4622490 ~ 4623058 (-)
LOC122346168 srrm4,LOC107720865,LOC107702227,LOC107561260,LOC107656798 other downstream 2089693 4144856 ~ 4193081 (-)
piwil2 piwil2,LOC107560971,LOC107707823,LOC107702219 other downstream 2384196 3878650 ~ 3898578 (-)
coq5 coq5,LOC107560969,LOC107707852,LOC107656810,LOC107561264,LOC107702223,LOC107707851,LOC107560965,LOC101158254,LOC107755815,LOC107561265 other downstream 2530010 3744675 ~ 3752764 (-)
G32908 sema4c,LOC107697240,LOC107708238,LOC107699920 other downstream 3322597 2951462 ~ 2960177 (-)
G33758 LOC107596916,LOC107710760,LOC107700938,LOC107587412,LOC107693817 other upstream 480556 6824171 ~ 6826182 (-)
usp20 usp20,LOC107691016,LOC107693839,LOC107710745 other upstream 579231 6922846 ~ 6943203 (-)
G33998 LOC108444092 other upstream 1038731 7382346 ~ 7397153 (-)
LOC122345606 LOC107712378 other upstream 1363355 7706970 ~ 7711824 (-)
si:dkey-220k22.3 NA other upstream 1374950 7718565 ~ 7721758 (-)

Expression


Co-expression Network