rpl12 (rpl12,LOC107587392)


Basic Information

Item Value
gene id rpl12
gene name rpl12,LOC107587392
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 7121409 ~ 7123998 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238989.1
CTCGGTCTTTTCCTCTTTCGCTTTTGTGGTGAAGGTGCAACGCATTTCGGTCGTCCCGAATCCGGGTTCATCCGACACCCTCACCTTTTCGAGTCGAACCGAGGTCAACCGTGTCTGATACAACATGCCTCCCAAATTCGACCCCAGCGAGATTAAAATTGTGTACATGAGATGTACCGGTGGAGAGGTTGGTGCCACTTCCTCTCTGGCCCCCAAAATCGGACCTTTGGGTCTTtccCCCAAAAAGGTGGGTGATGACATTGCAAAGGCCACCGGCGACTGGAAGGGCCTGCGAATCACTGTTAAACTGACCATTCAGAACAGGCAAGCAGCGATTGAGGTGGTGCCATCAGCTTCAGCCCTCATCATCAAGGCGCTGAAGGAACCTCCCCGTGACAGGAAGAAGGTCAAGAACAttAAGCACTCTGGAAGCGTTACTTTCGACGAGATCGTCGGCATCGCCCGTGTCATGAGGCCACGATCCATTGCCAGGGAGCTTAGTGGTACCATTAAAGAGATTCTTGGCACTGCTCAGTCTGTGGGCTGCACCATTGACGGTCGTCTTCCCCATGATGTCATTGATGACATCAACAGTGGCAAAGTTGAATGCCCAGCtGAGTAAgaagactaaaataaataaaacaaataaataaaaccatttaaaatga
>XM_043238990.1
TGCCTCCCAAATTCGACCCCAGCGAGATTAAAATTGGTATGTCTGGAATACGGTAACCGTTTGACGGATTTCTGATTAGGTCTGAGCGGCCATGTCTGCGCCTTGGCCTCTCGCGCTGGGACTAATAAATGAGTAGAAAGTGTACATGAGATGTACCGGTGGAGAGGTTGGTGCCACTTCCTCTCTGGCCCCCAAAATCGGACCTTTGGGTCTTtccCCCAAAAAGGTGGGTGATGACATTGCAAAGGCCACCGGCGACTGGAAGGGCCTGCGAATCACTGTTAAACTGACCATTCAGAACAGGCAAGCAGCGATTGAGGTGGTGCCATCAGCTTCAGCCCTCATCATCAAGGCGCTGAAGGAACCTCCCCGTGACAGGAAGAAGGTCAAGAACAttAAGCACTCTGGAAGCGTTACTTTCGACGAGATCGTCGGCATCGCCCGTGTCATGAGGCCACGATCCATTGCCAGGGAGCTTAGTGGTACCATTAAAGAGATTCTTGGCACTGCTCAGTCTGTGGGCTGCACCATTGACGGTCGTCTTCCCCATGATGTCATTGATGACATCAACAGTGGCAAAGTTGAATGCCCAGCtGAGTAAgaagactaaaataaataaaacaaataaataaaaccatttaaaatga

Function

symbol description
rpl12 Predicted to enable large ribosomal subunit rRNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in endodermal cell; eye; intestine; liver; and pancreas. Human ortholog(s) of this gene implicated in systemic lupus erythematosus. Orthologous to human RPL12 (ribosomal protein L12).

NR:

description
60S ribosomal protein L12 isoform X1

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02870 RP-L12e, RPL12; large subunit ribosomal protein L12e

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238989.1 True 668 mRNA 0.50 7 7121409 7123998
XM_043238990.1 False 647 mRNA 0.49 7 7121409 7123873

Neighbor

gene id symbol gene type direction distance location
ccn1l1 cyr61l1,LOC107723346,LOC107691050,LOC107740969,LOC107693831,LOC107587477 coding downstream 11577 7105673 ~ 7109832 (-)
lmo4a lmo4a,LOC107691029,LOC107723366,LOC107597048,LOC107587399 coding downstream 18678 7090165 ~ 7102731 (-)
LOC122344928 LOC107691049,LOC107598263,LOC107723339 coding downstream 78812 7019527 ~ 7042597 (-)
LOC122345529 surf1,LOC107726301,LOC107693844,LOC107587407,LOC107725413 coding downstream 166627 6952410 ~ 6954782 (-)
med22 med22,LOC107710756,LOC107691021,LOC107596962,LOC107726295,LOC107693846,LOC107587409 coding downstream 172094 6945514 ~ 6949315 (-)
fkbp15a LOC107691045 coding upstream 10080 7134078 ~ 7141495 (-)
crata crata,LOC107740932,LOC107691030,LOC107723360,LOC107587366,LOC107597084,LOC107693856 coding upstream 17631 7141629 ~ 7148537 (-)
ier5l ier5l,LOC107723335,LOC107598287,LOC107693861,LOC107691035,LOC107740934,LOC107587377 coding upstream 33496 7157494 ~ 7162360 (-)
ndor1 ndor1,LOC107740959 coding upstream 156447 7280445 ~ 7286031 (-)
c9 c9,LOC107691041 coding upstream 216214 7340212 ~ 7344137 (-)
G33816 NA non-coding downstream 70085 7050977 ~ 7051324 (-)
G33788 NA non-coding downstream 122025 6998360 ~ 6999384 (-)
G33811 NA non-coding downstream 132637 6988026 ~ 6988772 (-)
G33810 kank1b,LOC107730999,LOC107597012,LOC107691025,LOC107587402 non-coding downstream 135190 6986000 ~ 6986219 (-)
G33809 LOC107597012,LOC107691025,LOC107730999,LOC107587402 non-coding downstream 137536 6982426 ~ 6983873 (-)
G33947 NA non-coding upstream 69978 7193976 ~ 7194213 (-)
G33985 LOC107691047,LOC107597997,LOC107723329,LOC107740940,LOC107693835,LOC107587379 non-coding upstream 210416 7334414 ~ 7336545 (-)
G33990 NA non-coding upstream 242252 7366250 ~ 7395232 (-)
LOC122345654 NA non-coding upstream 326379 7450377 ~ 7460111 (-)
LOC122345617 NA non-coding upstream 371616 7495614 ~ 7498788 (-)
usp20 usp20,LOC107691016,LOC107693839,LOC107710745 other downstream 178206 6922846 ~ 6943203 (-)
G33758 LOC107596916,LOC107710760,LOC107700938,LOC107587412,LOC107693817 other downstream 295227 6824171 ~ 6826182 (-)
G33175 NA other downstream 2498351 4622490 ~ 4623058 (-)
LOC122346168 srrm4,LOC107720865,LOC107702227,LOC107561260,LOC107656798 other downstream 2928328 4144856 ~ 4193081 (-)
piwil2 piwil2,LOC107560971,LOC107707823,LOC107702219 other downstream 3222831 3878650 ~ 3898578 (-)
G33998 LOC108444092 other upstream 258348 7382346 ~ 7397153 (-)
LOC122345606 LOC107712378 other upstream 582972 7706970 ~ 7711824 (-)
si:dkey-220k22.3 NA other upstream 594567 7718565 ~ 7721758 (-)
si:ch211-117m20.4 si:ch211-117m20.4,LOC107663429,LOC107597540,LOC107717881,LOC107677428,LOC107677427 other upstream 1036879 8160877 ~ 8164026 (-)
G34372 zbtb44,LOC107597664,LOC107717865,LOC107677410,LOC107587334,LOC107722796 other upstream 1287884 8411882 ~ 8414806 (-)

Expression


Co-expression Network