Item | Value |
---|---|
gene id | mef2cb |
gene name | mef2cb,mef2c,LOC107720185 |
gene type | coding |
species | tiger barb (Puntius tetrazona) |
category of species | ornamental fish |
Item | Value |
---|---|
chromosome id | NC_056703.1 |
NCBI id | CM032072.1 |
chromosome length | 32833783 |
location | 17686501 ~ 17755766 (-) |
genome version | ASM1883169v1_2021_tiger_barb_Genome |
symbol | description |
---|---|
mef2cb | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and histone deacetylase binding activity. Acts upstream of or within heart development and transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in several structures, including bone element; brain; cardiovascular system; mesoderm; and pharyngeal arch. Human ortholog(s) of this gene implicated in autosomal dominant mental retardation 20. Orthologous to human MEF2C (myocyte enhancer factor 2C). |
mef2c | Enables several functions, including DNA binding activity; DNA-binding transcription activator activity, RNA polymerase II-specific; and protein heterodimerization activity. Involved in several processes, including negative regulation of cell migration; positive regulation of cell differentiation; and regulation of transcription by RNA polymerase II. Located in cytoplasm and nuclear speck. Part of protein-containing complex. Implicated in autosomal dominant mental retardation 20. |
description |
---|
myocyte-specific enhancer factor 2C isoform X6 |
id | name | namespace |
---|---|---|
GO:0006355 | regulation of transcription, DNA-templated | biological_process |
GO:0060914 | heart formation | biological_process |
GO:0003143 | embryonic heart tube morphogenesis | biological_process |
GO:0055013 | cardiac muscle cell development | biological_process |
GO:0005634 | nucleus | cellular_component |
GO:0003677 | DNA binding | molecular_function |
GO:0046983 | protein dimerization activity | molecular_function |
id | description |
---|---|
K09260 | MEF2A; MADS-box transcription enhancer factor 2A |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_043238993.1 | False | 4405 | mRNA | 0.44 | 10 | 17686501 | 17746516 |
XM_043238994.1 | False | 4419 | mRNA | 0.43 | 11 | 17686501 | 17755766 |
XM_043238996.1 | False | 4398 | mRNA | 0.44 | 10 | 17686501 | 17746518 |
XM_043238997.1 | False | 4379 | mRNA | 0.44 | 10 | 17686501 | 17746517 |
XM_043238998.1 | False | 4372 | mRNA | 0.43 | 10 | 17686501 | 17746519 |
XM_043238999.1 | False | 4311 | mRNA | 0.44 | 10 | 17686501 | 17746518 |
XM_043239000.1 | False | 4285 | mRNA | 0.43 | 10 | 17686501 | 17746519 |
XM_043239002.1 | False | 1501 | mRNA | 0.51 | 9 | 17689645 | 17746517 |
XM_043239003.1 | False | 1469 | mRNA | 0.51 | 9 | 17689645 | 17746521 |
XM_043239004.1 | True | 4519 | mRNA | 0.44 | 11 | 17686501 | 17746519 |
XM_043239005.1 | False | 4278 | mRNA | 0.43 | 10 | 17686501 | 17746521 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
tmem161b | tmem161b,LOC107720188,LOC107660970,LOC107669514,LOC107753179,LOC107553926 | coding | downstream | 54339 | 17616213 ~ 17632162 (-) |
ccnh | ccnh,LOC107753181,LOC107553924,LOC107720191,LOC107660965 | coding | downstream | 94144 | 17586823 ~ 17592357 (-) |
LOC122344712 | ckmt2b,ckmt2,LOC107720280 | coding | downstream | 302353 | 17382031 ~ 17384148 (-) |
LOC122345546 | LOC107699749,LOC107587493,LOC107756319,LOC107703272,LOC107567144,LOC107720200 | coding | downstream | 326760 | 17354929 ~ 17359741 (-) |
LOC122344736 | apba1,apba1a,LOC107587500,LOC107720269,LOC107756314,LOC107567151 | coding | downstream | 340886 | 17329196 ~ 17345615 (-) |
mblac2 | mblac2,LOC107669518,LOC107720183,LOC107753186 | coding | upstream | 137742 | 17893508 ~ 17895933 (-) |
lysmd3 | lysmd3,LOC107720182,LOC107660979,LOC107553928,LOC107756288,LOC107669503 | coding | upstream | 143998 | 17899764 ~ 17904335 (-) |
arrdc3a | arrdc3a,LOC107720180,LOC107660973,LOC107669509,LOC107756289,LOC103032997,LOC108426240 | coding | upstream | 271455 | 18027221 ~ 18034972 (-) |
LOC122344755 | LOC107575123,LOC107720179 | coding | upstream | 281821 | 18037587 ~ 18042062 (-) |
LOC122345814 | LOC107567414,LOC107756269,LOC107699689,LOC107575123,LOC107720179,LOC107720216 | coding | upstream | 287748 | 18043514 ~ 18046387 (-) |
LOC122345155 | NA | non-coding | downstream | 477 | 17646096 ~ 17686024 (-) |
G37363 | NA | non-coding | downstream | 334091 | 17351315 ~ 17352410 (-) |
G37340 | NA | non-coding | downstream | 521349 | 17162677 ~ 17165152 (-) |
G37310 | NA | non-coding | downstream | 795311 | 16890704 ~ 16891190 (-) |
G37309 | NA | non-coding | downstream | 796183 | 16889042 ~ 16890318 (-) |
G37439 | NA | non-coding | upstream | 136191 | 17891957 ~ 17893318 (-) |
G37453 | adgrv1,LOC107669515,LOC107660972 | non-coding | upstream | 190781 | 17946547 ~ 17946764 (-) |
G37455 | adgrv1,LOC107660972,LOC107669515 | non-coding | upstream | 198734 | 17954500 ~ 17954747 (-) |
G37456 | NA | non-coding | upstream | 199785 | 17955551 ~ 17955769 (-) |
G37458 | adgrv1,LOC107660972,LOC107669515 | non-coding | upstream | 206077 | 17961843 ~ 17962070 (-) |
LOC122344738 | acsl1b,LOC107571490,LOC107678619,LOC107758469,LOC107552354,LOC108274927 | other | downstream | 336121 | 17346469 ~ 17350380 (-) |
LOC122345693 | NA | other | downstream | 826570 | 16787809 ~ 16859931 (-) |
G37277 | ncam1a,LOC107681081,LOC107548183,LOC107756101 | other | downstream | 973334 | 16687260 ~ 16713167 (-) |
G37258 | ncor2,LOC107687981,LOC107684513,LOC107753125 | other | downstream | 1053380 | 16596855 ~ 16633121 (-) |
LOC122344728 | uprt,LOC107733222,LOC107672530,LOC107680369,LOC107748634 | other | downstream | 1307986 | 16376266 ~ 16378515 (-) |
mtx3 | cmya5,mtx3,LOC107699728,LOC107703257,LOC107720274,LOC107756304,LOC107555495,LOC107756305,LOC107720223,LOC107703259 | other | upstream | 1419697 | 19175463 ~ 19183978 (-) |
kcnt1b | LOC107720246,LOC107699766,LOC107672542 | other | upstream | 2109253 | 19865019 ~ 19935576 (-) |
G38058 | NA | other | upstream | 2295893 | 20051659 ~ 20055798 (-) |
G38140 | si:ch211-236k19.4,LOC107552622,LOC107740829,LOC107699705,LOC107731026,LOC107672535,LOC107587659 | other | upstream | 2369823 | 20125589 ~ 20127390 (-) |
LOC122345844 | ppil3 | other | upstream | 2638965 | 20394731 ~ 20396734 (-) |