CI01000004_15859240_15861471 (APOL1)


Basic Information

Item Value
gene id CI01000004_15859240_15861471
gene name APOL1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 15859240 ~ 15863449 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_15859240_15861471.mRNA
GGCGATAGCAATGAAGTCCTGGAAAAGATTCCTGACACAGTGGCAGAGACACCTGGAGAAGAGGAAAATACAAAACAAAAAGGACAAAAGAAGAAACCCAAAAATCCATTTATGCCCCAGAGTGCAGCAAAGAACAAAACAACGCAGAAGAAGAATGGAAACCAAAATGGAGGCAGTGGCAGTGACCTTGCAGAGACTAAAGGCCAAAAGAAGTCCCTCATGGAATGGCTAGACGAGTTCCGTTTAAGTGAAAATGAGAGAGAGGATGAGGAGGATCTTGATGGCCTCATGGATTGGTGGAGCACTGTGGAACAATGGGAGGACATGCCCAAAAGCGACAACATGACAGAGAAAGAGGAAGCCAAGGCTTTTGCTGTAACTGCTGAGAAGGTGCAAAAAGGCATACGTGTGTTTAATAAACTTTTCAACGAGCGAGCAGAAGGACTGTGGCAGCATGTGATCGACCTGCATGCCATTGCTGACGGCCTGGACCGATTCAACAAGAAGACTAAAATCGCCCAGATCACCGGTGGCTCCACCAGCGCTGTGGGAGGTGTTGCTACCATAACCGGCCTCATCTTGGCACCTTTCACCATGGGAACCTCTCTGATTGTCACTGCGGTTGGCCTGGGAGTTGCCATGGCAGGCGGGCTTACCTCTGCCTCTGCTGGGATATCCAGTACCGTCAACAACTCTATGGATCGCAAGAAGGTGGAGCGCATTGTAGAAGACTACCAGACGAAGATGGCTGACCTTAACAAATGCATGAAGTTCATCAAACAAGGCATTACAAACCTACGCAAGTTCAACCTGAATAAGATTAAGAAGCATGGCTATAATCGAGACTTCCCTTGTTTCGACAATATCTATGAGGACGGCGCCATGGCGGGCAAAGCTATTCTAACTAACGCCAATGAGATTATGCGTGTGATGCAGATAGCCAATGCAGCGGGAACAACTGCAGCACGCGCTGTGCAGATTGCTAGTATATCTACAGGTGTTTTGACGGGGCTTTTTGTTGGGATGGACATCTACTTTGTGGCCAAGGACTCTCATGAGCTTAAAAACGGTGCAAAGTCAGAATTTGCTGCCAAAATCAGAGAGGTGGCAGACCAGCTACAGGAGGGCTTAGTGGAACTCAACAGCATCCGAAATGAGTTGCACTTCACCACCACTCTGAAAGAAGACAAACCTCTGTAAACACTCCTCTCGACTCCACTAGATGTTTAAAGATTATATAACTATACTGGCTTTCCTTATTAGACATCAAAGGAAATTTGGGCTCTTAACTTGTTTTTATGGCTTTATCCACTGCTTGTTAGGGTATAATTAGGGGCCAAGCCCCAAAGGGGCTGTGCTGAAGCCCTTAGTGTTATCCGTTAGTTTTCTTATTATTCCTCCCAAAAGGGAATCTATGGTAGCCCTATCAACGGAACATGAAAAAATGATTAAATTTGGCACACTTGTAGTGATGGTAATGAATAGTGAACTGACCAATTTTGGAGTCTCTAGGACCAACTCTATAGCGCCACCACAAGTTCAAAAATTCACTTTTCTAAAGGTTACCTTTGAACCCTTTGTTCTAGAAAAATGAAACTTAGTACACCTGATTCCTCTCATGCTCTCATCACATTCAACATCTTACATTTAAGACTCAAAAGTACAGTATTCAGTTTTTTTTCGCTGCTCCTCCTTCAAATTTTGTCCCAATTCCTACAAAAATTGGCTCTGATGATCTTTGGACCGAGCCGCACAGAAATGACAGATTGATGTCTTAACGAGGCATCATTGTCTTAACGAACTTAACAAGGTTGACCCAAAATTGGTCCAGAGGCTATATCTTGGCCAAACTTTGAGTAATCAGAATGAAAATTGGTACGCTTCATCGGATCCATGATCAGTGGGTCTATGCCAATTTTGGGAACAGTGCCACCTACAGGTCATGAAAAATGGCTATTTTTGCTCATAACTGTTGAACAGTTTATCAGAAAATGAAAAGCTTGGTATCTTGTGTCATGCCGAATCCGAGGATACAGATTTTTTCAGGATTGAATGAAACGTTGGTCAGCCATGTTCAATTTTGTCATAACTTTCAATATCTTTTAAACGATTTCAAATATCAACACAAAATTTGGTAGGTATCAACATCAGAATCTCCTGAAGGTACCTGAGAAGTTTGAACACAGCGCCACCTAGTGTTTCAAATATATAAGGATTTTTGCAAAAAGGCTTATAACTTTTGAAAACATTATCCAAAATTTGTTTTCTCTGTGTCACTCAGTTCCCTGGCTAATGCCAATTCTGACGATGTGTCATTTGTCATTTTCCTTAAATGTGCCTGTCCGCCATATTGAAGTAAATGAAAAACAGTTTTTTTTTTTGCTACTCCTGTCCTACCTACTGTCCAAAATTGGCTCAGATGGTCTTTGGACTGAGCCTCACAGAAAAGACTGAACAGATTTTTGATATTTGCTACCGTTCCCGATAAATATCTCTCCAAAGTTGACCCTTCCTGTGTCTGTTGTCTTATGTTAGTTAGCTTAGCATGCTAACCAGTTGCCATTCTTTCTAATGTGGCTCTTTAGCTATAAAGTTAACCATAAGCTACATTAGCACTAAGTTAGAATAGCATGCTAATCTGGTTAAAATATTAAGTAATGCTTTTGTGTGCTCATTCTCACACTGAAGGTTCTCCTCGACAGTCTGGGGAACCAGCGTCAACTGAGTGCTGCAATCAGTAATGCCACAAGCCCTGAGCCTGCTTCTGTTTCAGGCATTGTTTTTTTCTGAGAATGATCTCATCTGAAATTATTAAATATAACATGCGGTGTATCTATATATGAATTCTTCATTTTGACTTGATTCTCACTTCCTCAGCATCTGTATGTAAGCACATCTTCCCAGTGGTGCAACGAGATGCGTGACAGGCACCTGACCAAGAGATTGTGGGTTCTAGTCCTGTGTGGGGCAACTTTATAAAATTGTGTGCAATGTTGTGTCATTTAGAGCCAATAGCTGCGGTTCTGCCTTCAAAACCTCAAGTCTCTGTAAAATTAAACAAACTGTTGTATGAGTGGCATGCTGTTTAAAGCAACAGGCTTTAGTTTTGAAGATTGTTTGATCAAATGTGTAGCATGTGTTTAACCATGTGAATTGTGCAGTGTTCAAAAGTTTCCTA

Function

symbol description
apol1 Predicted to enable lipid binding activity. Acts upstream of or within glomerular filtration; glomerular visceral epithelial cell development; and pronephric glomerulus morphogenesis. Predicted to be located in extracellular region and membrane. Predicted to be integral component of membrane. Is expressed in brain; heart; integument; liver; and pleuroperitoneal region. Used to study kidney disease. Human ortholog(s) of this gene implicated in focal segmental glomerulosclerosis. Orthologous to human APOL1 (apolipoprotein L1); APOL3 (apolipoprotein L3); and APOL5 (apolipoprotein L5).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0072015 glomerular visceral epithelial cell development biological_process

KEGG:

id description
K14480 APOL; apolipoprotein L

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_15859240_15861471.mRNA True 3178 mRNA 0.42 7 15859240 15863449

Neighbor

gene id symbol gene type direction distance location
CI01000004_15825817_15827475 TEP1 coding upstream 31637 15825817 ~ 15827603 (+)
CI01000004_15787382_15803133 NA coding upstream 56096 15787382 ~ 15803144 (+)
CI01000004_15711867_15722470 PARP2 coding upstream 136658 15711867 ~ 15722582 (+)
CI01000004_15694735_15698103 SDR39U1 coding upstream 160819 15694735 ~ 15698421 (+)
CI01000004_15687242_15691238 NA coding upstream 167963 15685262 ~ 15691277 (+)
CI01000004_15867404_15875293 NA coding downstream 3536 15866985 ~ 15875304 (+)
CI01000004_15892502_15900203 DCAF8 coding downstream 26924 15890373 ~ 15900852 (+)
CI01000004_15906907_15909647 HNRNPC coding downstream 43458 15906907 ~ 15909669 (+)
CI01000004_15930478_15944692 NA coding downstream 67029 15930478 ~ 15944744 (+)
CI01000004_15947153_15953245 NA coding downstream 83704 15947153 ~ 15953870 (+)
G34205 NA non-coding upstream 15838 15843132 ~ 15843402 (+)
G34196 NA non-coding upstream 78616 15779675 ~ 15780624 (+)
G34195 NA non-coding upstream 79742 15779166 ~ 15779498 (+)
G34194 NA non-coding upstream 81889 15777033 ~ 15777351 (+)
G34193 NA non-coding upstream 82232 15776790 ~ 15777008 (+)
G34213 NA non-coding downstream 23829 15887278 ~ 15887534 (+)
G34214 NA non-coding downstream 57234 15920683 ~ 15920886 (+)
G34215 NA non-coding downstream 60255 15923704 ~ 15924496 (+)
G34216 NA non-coding downstream 65052 15928501 ~ 15928750 (+)
G34228 NA non-coding downstream 151457 16014906 ~ 16015106 (+)
CI01000004_15091390_15096502 GA45B, GADD45B, GADD45BB other upstream 767271 15091200 ~ 15097173 (+)
CI01000004_14036114_14036449 KIAA0040 other upstream 1822340 14035393 ~ 14039142 (+)
CI01000004_12646972_12652534 NA other upstream 3203529 12646838 ~ 12652570 (+)
G31865 NA other upstream 3664093 12192130 ~ 12197418 (+)
CI01000004_11666900_11667179 NA other upstream 4191581 11666900 ~ 11667659 (+)
G34220 NA other downstream 75908 15939357 ~ 15939950 (+)
G33815 NA other downstream 199966 16063415 ~ 16066464 (+)
G34400 NA other downstream 1113879 16971995 ~ 17025976 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location