gjd1a (gjd1a,LOC107700241,LOC107548473,LOC107746368,LOC107710581,LOC107596136,LOC103027887,LOC108437049)


Basic Information

Item Value
gene id gjd1a
gene name gjd1a,LOC107700241,LOC107548473,LOC107746368,LOC107710581,LOC107596136,LOC103027887,LOC108437049
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 13589182 ~ 13600365 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043239043.1
gggaaagagagagagaagaggaggaggagcggAGGGAAAGGTATCATCAGCAGCAACAGCAGTGCAGCACAAAGACTAAAAGAACGGGGAaggtgtggagagagagagagagagagagcaggagagagagaagagaggatgAGGTTTGAAGAAGACTGAGCCCTTTGCCGCAGACATGACCACGGGCTCATCAGTCAACCGGACGTAACCTTGACGATCCTCGTCTGCTgctgccgctgctgctgctgccacaCACTGGATCAGAGCCgatagtgtgtgtatgtgtctgtgtgtgtgtgtgcgagggtGCGCTCAGACATTGCTATGAGATTCAGAGACCCGCTTCATCATCCGTGTGCTCTTGCATGTGTGCTCCTTTAGCGTTCGGCTCAATTAATGGCAAAAGAAAGCCTGCAGTGACCGTcaagtgagtgagtgtgtgtgtgtgagcttgagTTGAGTGTGCATGTGGAGAAAAGGGTAGAAAAGGTCAGATAGGTGTAGAGAGTGTGTATTTGTAGCACAGGGTACGATGCCAGAACAGGTAGAGCGTTCTACACCCTGAGAGACAGATATCACAGTGAAGGTGGCcggtgtgtgcgcgcgtgtgtgagagactgaGAGATGCAGTATGGTTGAAGTCTCTCAGCCTCAGCATCATCAGATTTTCTGCTGCAGATGCTACACTAGCTCATCTCCGCACTAGAGCGCTACCctgacacacacgcacgctcagACTCACACAGCTGCGGCTTCAAGAGGAGCCCCAAGAATCCCATCAAAGGTCAAAAGGGGGACACTGGAAGAGTTGCCGAGGGCAAAGGTCGTGACAGCTGAGGCTGAAGGTCAGAGGAGGAGTGAGAGCCATAAGCGCGGCATCATGGGCGAGTGGACTATACTGGAGAGATTGCTGGAGGCTGCGGTGCAGCAGCACTCTACTATGATCGGCAGGATCCTGCTGACAGTGGTGGTGATATTCCGGATCCTGATCGTGGGTATAGTGGGAGAGAAGGTGTATGAGGACGAACAGATTATGTTTATCTGTAACACACTGCAACCGGGTTGCAACCAGGCCTGCTACGATAAAGCCTTCCCCATCTCCCATATCCGTTACTGGGTTTTCCAGATCATCTTGGTGTGTACGCCAAGCCTCTGTTTCATCACTTACTCAGTGCACCAGTCTGCCAAGCACAAAGATCGCAGTTACACCCTCCTGCACGGCCCGTACATCGACCACGGACACGGGGCGAACCGCAAGCTCCGCAACATCAACGGTATCCTGGTGCACCCAGAAAGCAAAGACGACCGCGACTGTCTGGATTTGAAAGACATTCCCAACATTCCGCAAGGGGTCACATATTCCAAAAGTGCCAAGATCCGTCAGCAAGAGGGCATCTCCCGTTTCTATGTCATACAAGTGGTGTTCCGGAACGTTCTGGAAATCGGCTTTCTCGCCGGCCAGTACTTCCTGTACGGATTCAACGTTCCCGCCATGTTTGAGTGCGACCGCTACCCTTGCGTGAAGGAGGTTGAATGCTACGTGTCACGTCCCACGGAGAAGACAGTTTTCCTGGTGTTCATGTTCGCAGTTAGCGGGATCTGCGTGGTGCTAAATTTGGCTGAGCTCAACCATCTGGGCTGGCGGAAGATTAAGACGGCCATCCGTGGCGTACAGGCCCGCAGGAAGTCCATTTGTGAGATCCGGAAAAAGGATGTGTCCCACCTGTCCTCTGTGCCCAACCTGGGCCGCACCCAATCTAGCGAATCGGCCTATGTCTGACAGCGAATCGGGGAGGGGCTTAGACGAGGTTGGGAGTGGCTGACGAGGCGACGGCCACACCCTGTGCTGCAGACTTGACATTGCAAATTTTATGCATAGGTTGGACAGGGTGAGAGAGGGGTAgggtgaaaacaaaaaaaggatgaGGGAGGACTGGAGCAAATCAGATTCGGCATTCTAAACTTTATGGAGAATAAAAACGCTTTTTCGGAACTTTAATGATGAGCGCTGAGGAACAGAGCGGGACTCATactacaaacacatttacaccacacacactcacacacatactgatATCCCTGAGCCCTGCTTAACAACAAAAGTCTTccaacagaaaaagagaaatttaagaaacaaaactgATTCAAGTTGCTTGATGTCAACAGAGATAGAAAGATGGAGGGATGAAGCTAGAGGGCAGCTCAGCATGTGACTCAGAAGCATTGTAAAGTATGAaaaaatgttctccagggtCAATGCTGAGACATCCCTCACGTTTTGAACAAccggaaagagaaaaaaggaggACAAACAAAAGAGAATAAAACCGTACCTCAGCACAGACTCCTCTACGCCTCTCCCCCACttgctttctttcattttctgtctctttctgcaTAGTTTTATAGATATAGCTATTAAGTATACAAGGCAAGAAGAGAAAACGAACATTTATCTACTGATAAGCCACCCCCACGTTTGCTGGAGGGCCATAAGAGATTCCATACTCATGCAAAAATCAACATTGACACACTACAGTCCCCAGTCCAAATCCCAAGATTCCTCTGTTTCACCAACCCCCCCCCCATTCAGTACTGTACATATTTCAGAATATCAATATTGCAGCATCCATGTATTTCACACATTGAAGTGTAGCTTTTGccattatttaaaagaattacaCATTGAttgccaaaaacaaaaatgaaagaaagaaaaaaaaaaaaaactaaattgtgtTGTTTATCTGCATTTGTTCTGTAATGGACAGGAAAAATAGCGATTTTATACTATGGGCATTTCCAGACAAAGGCATGTTACAATGCATCATTAGAATGGCTAGATAGTGTTACGAGCTGTGTATAGAAACAGACAGTTTCTTTTTTGCACCCAATGTTTTTGAGGTGTATTCTGAAGCATGCGGGAGGAGATCTATAGCTCTATGGGAATGGCAGAGAGAGTCTATACTGAGTAAGGCTCCAATGCagcaataatatataaagatatacgtaaattataaataaatatatgtcataaaaataaatgaataaactattaaagaaataaatgaaatataatggcATAACAA

Function

symbol description
gjd1a Predicted to enable gap junction channel activity. Acts upstream of or within synapse assembly. Located in asymmetric synapse. Is integral component of postsynaptic membrane. Is expressed in eye. Orthologous to human GJD2 (gap junction protein delta 2).

NR:

description
PREDICTED: gap junction delta-2 protein-like

GO:

id name namespace
GO:0007154 cell communication biological_process
GO:0005922 connexin complex cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043239043.1 True 3089 mRNA 0.47 2 13589182 13600365

Neighbor

gene id symbol gene type direction distance location
crx crx,LOC107596137,LOC107700239,LOC107757554,LOC107693445,LOC107548475,LOC107746366,LOC105892503 coding upstream 13772 13573217 ~ 13575410 (+)
hnrnpl hnrpl,LOC107700238,LOC107693443,LOC107757553,LOC107548476 coding upstream 25318 13553998 ~ 13563864 (+)
srsf7a LOC107700237,LOC107746364,LOC107548478,LOC107757551,LOC107596141,LOC107693444 coding upstream 36765 13549020 ~ 13552417 (+)
slc8a2a slc8a2a,LOC107757550,LOC107693442,LOC107596143 coding upstream 40982 13531277 ~ 13548200 (+)
nccrp1 nccrp1,LOC107548479,LOC107757518,LOC107693441,LOC107596142,LOC107700228,LOC107746425 coding upstream 58320 13528351 ~ 13530862 (+)
nfkbib nfkbib,LOC107548472,LOC107700243,LOC107693450,LOC107596135,LOC107710580,LOC107746369 coding downstream 8109 13608474 ~ 13612669 (+)
tppp2 tppp2,LOC107700244,LOC107548470,LOC107746373,LOC107596214,LOC107693436,LOC107710570 coding downstream 20445 13620810 ~ 13623529 (+)
LOC122345172 si:dkeyp-110c7.4,LOC107746371,LOC107700245,LOC107596213,LOC107683146 coding downstream 23482 13623847 ~ 13626422 (+)
tagln2 -,LOC107710578,LOC107700246,LOC107746372,LOC107548469,LOC107596134,LOC107693452 coding downstream 33461 13633826 ~ 13638853 (+)
si:dkey-17o15.2 LOC107746431,LOC107710568,LOC107596211,LOC107693437,LOC107700230,LOC107548464 coding downstream 99899 13700264 ~ 13704524 (+)
G36141 NA non-coding upstream 8384 13566977 ~ 13580798 (+)
G36140 NA non-coding upstream 67574 13519973 ~ 13521608 (+)
G36109 NA non-coding upstream 264799 13324033 ~ 13324383 (+)
LOC122345423 NA non-coding upstream 276530 13299755 ~ 13312652 (+)
G36062 NA non-coding upstream 480329 13108632 ~ 13108853 (+)
G36168 NA non-coding downstream 47561 13647926 ~ 13648538 (+)
G36191 NA non-coding downstream 120420 13720785 ~ 13721566 (+)
G36198 NA non-coding downstream 131604 13731969 ~ 13732456 (+)
G36332 NA non-coding downstream 374167 13974532 ~ 13974759 (+)
G36405 NA non-coding downstream 398735 13999100 ~ 14000337 (+)
LOC122346073 LOC107654625,LOC107597279,LOC107741224,LOC107696048,LOC107727161 other upstream 781831 12803789 ~ 12807351 (+)
iscu si:ch211-191d15.2,iscu,LOC107597282,LOC104937683 other upstream 883937 12703352 ~ 12705245 (+)
si:ch211-225b11.4 si:ch211-225b11.4,LOC107743340,LOC107597327,LOC107654601,LOC107580265,LOC107735986 other upstream 1060392 12514013 ~ 12528790 (+)
G35720 LOC107654642,LOC107597266,LOC107743332,LOC107741203,LOC107557123,LOC107663229 other upstream 1333510 12249138 ~ 12255672 (+)
smarca1 smarca1,LOC107597262,LOC107672796,LOC107741199,LOC107663213,LOC103034185,LOC105028962,LOC105893234,LOC106603320 other upstream 1646072 11924228 ~ 11943110 (+)
ins ins,LOC107596207 other downstream 383732 13984097 ~ 13985706 (+)
G36495 NA other downstream 690055 14290420 ~ 14292500 (+)
LOC122345142 NA other downstream 699678 14300043 ~ 14305304 (+)
LOC122345214 NA other downstream 732658 14333023 ~ 14337765 (+)
mrpl1 LOC107663378,LOC107746869,LOC107752362,LOC107599195 other downstream 747197 14347562 ~ 14349991 (+)

Expression


Co-expression Network