tppp2 (tppp2,LOC107700244,LOC107548470,LOC107746373,LOC107596214,LOC107693436,LOC107710570)


Basic Information

Item Value
gene id tppp2
gene name tppp2,LOC107700244,LOC107548470,LOC107746373,LOC107596214,LOC107693436,LOC107710570
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 13620810 ~ 13623529 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043239046.1
CTGTCTTGCGtcattgtacacacacacacacacacacacacacacacacttaccaaGGGCAGAGACGAAGACAGAGgaacacacacccacattcaGCATCCTCTCAGTAGCAGCTTAGCATCAGTATCCAGGACTGTTCAACTCACTGTCAGCATGGCCGAAGGTTCGGGTGAAGTATCACTGGAAGATGTTGAGACGGCATTTCGCAAATTTGCAGTTCATGGAGACAGCAAAGCGACGGGGAAGGAGATGAACGGGAAAAACTTCGTGAAGCTGTGTAAGGACTGCAAGGTCATCGACGGCAAATCTGTCACCAGCACAGATGTGGACATCATCTTTAGCAAAGTCAAGGCTAAATCGGCACGCGTCATCACATTTGAGCAGTTCACTCAAGCCATGGCTGAGTTGgctccaaaacattttaaagggaaGAGCCAGGAAGAGGCAGTACAGCTCCTATACGGTCTCATTGCTGGCAAAGAACCCGCCAACATCGGTGTCACTAAAGTGGCAAAGGCCTCTGCTGTAGACAGGTTAACAGATAGCAGCAAGTACACTGGTTCTCATAAGGAGCGCTTCGATGAGTCTGGAAAGGGAAAAGGCCGCTCAGGGAGGGAATACATCCCTGATACCAGCGGATACGTTTCAGCGTACAAAGGCCAAGGCTCCTACGACAGCAAAGTAAAAGAGGACGAATAAAAAGGATAATATGTATGCTGAAGAGTGCTTTATGCATGACATAATATGCGTATGTTTGAAGTCttcctgttttatttcagcAGCTGGGTCGTGGCTTGCCTGCAAAAACAAACCCCTGGCTAAAGCCTGACACGAAAACCTGTgtctttcttatttttacacTTGCAAGTACTTCACAGTTAATGATCTACTGCTATTATAAATCACAAACACCCTTTGGTGACACGTGtggttttttttacactgattctTACCGCCATGTAGCGACCTGCCTGTCTGTCCATaccttaaaaacaaagatgttgaGATGCGTGCCTTGAATGCAAGCCATTTCAGGCAAAAACATCTGCCAAATGTAGCTTGCACGAATGAGAATTTCAACATACAAAATGACAGTCGGTTCAGACACTAGGTTACTGATTTTTCATTTGGTAACAAgctcatttttatgtttgcctttcataaaattaatgtatcatttatatttaagacgaaataaaactgaataacaactcaaaaatgaaaactgtcatcatttactcatatgctcatgttgttccaaacctgtttgattttattctgtctgtggaacataaaagaaaatgtcctataatgtttttttcaaccCAATGGTCACCAAACAGTTTGtctaccaacattcttcaaaatatcttcttgtcTCTGTAATGCACAGAAGTAATTTGTAATGGTTTGAAACAATGAGAAAGTGAGTACAAATGACAGGATTGAGTTTTTTCGTgtgtactatccctttaagtgctTCTTACTCCCTGCTGGGGTTGATATTTTGCTGGCTAAATGAGCTTTATTGCGCACTATTGGAGCTTCTTGGCTTTGTTGCACAGAGATCTATATCAGACTGTAAACACTAAACTGAGTTgacaaataaagtcaaataaagaAACGCCATGTGAGAATACTTGGCTTAAATTACA

Function

symbol description
tppp2 Predicted to enable tubulin binding activity. Acts upstream of or within axon extension. Predicted to be located in cytoplasm and cytoskeleton. Predicted to colocalize with microtubule. Is expressed in Rohon-Beard neurons; gut; and trigeminal sensory neurons. Orthologous to human TPPP2 (tubulin polymerization promoting protein family member 2).

NR:

description
PREDICTED: tubulin polymerization-promoting protein family member 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043239046.1 True 1655 mRNA 0.42 4 13620810 13623529

Neighbor

gene id symbol gene type direction distance location
nfkbib nfkbib,LOC107548472,LOC107700243,LOC107693450,LOC107596135,LOC107710580,LOC107746369 coding upstream 8141 13608474 ~ 13612669 (+)
gjd1a gjd1a,LOC107700241,LOC107548473,LOC107746368,LOC107710581,LOC107596136,LOC103027887,LOC108437049 coding upstream 20445 13589182 ~ 13600365 (+)
crx crx,LOC107596137,LOC107700239,LOC107757554,LOC107693445,LOC107548475,LOC107746366,LOC105892503 coding upstream 45400 13573217 ~ 13575410 (+)
hnrnpl hnrpl,LOC107700238,LOC107693443,LOC107757553,LOC107548476 coding upstream 56946 13553998 ~ 13563864 (+)
srsf7a LOC107700237,LOC107746364,LOC107548478,LOC107757551,LOC107596141,LOC107693444 coding upstream 68393 13549020 ~ 13552417 (+)
LOC122345172 si:dkeyp-110c7.4,LOC107746371,LOC107700245,LOC107596213,LOC107683146 coding downstream 318 13623847 ~ 13626422 (+)
tagln2 -,LOC107710578,LOC107700246,LOC107746372,LOC107548469,LOC107596134,LOC107693452 coding downstream 10297 13633826 ~ 13638853 (+)
si:dkey-17o15.2 LOC107746431,LOC107710568,LOC107596211,LOC107693437,LOC107700230,LOC107548464 coding downstream 76735 13700264 ~ 13704524 (+)
zgc:163098 zgc:163098,LOC107746377,LOC107700249,LOC107693453,LOC107710575,LOC108260249,LOC108411532 coding downstream 81898 13705427 ~ 13718551 (+)
klhl13 klhl13,LOC107548461,LOC107693456,LOC107596129,LOC107710573,LOC107700252 coding downstream 109993 13733522 ~ 13776553 (+)
G36141 NA non-coding upstream 40012 13566977 ~ 13580798 (+)
G36140 NA non-coding upstream 99202 13519973 ~ 13521608 (+)
G36109 NA non-coding upstream 296427 13324033 ~ 13324383 (+)
LOC122345423 NA non-coding upstream 308158 13299755 ~ 13312652 (+)
G36062 NA non-coding upstream 511957 13108632 ~ 13108853 (+)
G36168 NA non-coding downstream 24397 13647926 ~ 13648538 (+)
G36191 NA non-coding downstream 97256 13720785 ~ 13721566 (+)
G36198 NA non-coding downstream 108440 13731969 ~ 13732456 (+)
G36332 NA non-coding downstream 351003 13974532 ~ 13974759 (+)
G36405 NA non-coding downstream 375571 13999100 ~ 14000337 (+)
LOC122346073 LOC107654625,LOC107597279,LOC107741224,LOC107696048,LOC107727161 other upstream 813459 12803789 ~ 12807351 (+)
iscu si:ch211-191d15.2,iscu,LOC107597282,LOC104937683 other upstream 915565 12703352 ~ 12705245 (+)
si:ch211-225b11.4 si:ch211-225b11.4,LOC107743340,LOC107597327,LOC107654601,LOC107580265,LOC107735986 other upstream 1092020 12514013 ~ 12528790 (+)
G35720 LOC107654642,LOC107597266,LOC107743332,LOC107741203,LOC107557123,LOC107663229 other upstream 1365138 12249138 ~ 12255672 (+)
smarca1 smarca1,LOC107597262,LOC107672796,LOC107741199,LOC107663213,LOC103034185,LOC105028962,LOC105893234,LOC106603320 other upstream 1677700 11924228 ~ 11943110 (+)
ins ins,LOC107596207 other downstream 360568 13984097 ~ 13985706 (+)
G36495 NA other downstream 666891 14290420 ~ 14292500 (+)
LOC122345142 NA other downstream 676514 14300043 ~ 14305304 (+)
LOC122345214 NA other downstream 709494 14333023 ~ 14337765 (+)
mrpl1 LOC107663378,LOC107746869,LOC107752362,LOC107599195 other downstream 724033 14347562 ~ 14349991 (+)

Expression


Co-expression Network