ccnh (ccnh,LOC107753181,LOC107553924,LOC107720191,LOC107660965)


Basic Information

Item Value
gene id ccnh
gene name ccnh,LOC107753181,LOC107553924,LOC107720191,LOC107660965
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 17586823 ~ 17592357 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043239049.1
AAGCGCCTAAAAGGTTGCGTGAATCGTACGCGACGCGTTCTCGCGCATGTCAACTGTTAAAACATTGTTTGAAACAAAGATCAGCCAAATCTGTTAAAatcgtttaatatttttacgaCCGTCCAGACGGAGCGTCACCGTGTGCCCAAGAGGCTTTATATTCAACATGTATCACAACAGCTCTCAGAAGAAATTCTGGACTTACGATAAAGAGGAATCCTTAGATAAATTAAGACTAGAAGCTAATCGGAAGTTCTGCTCAAAAGGCTTGACCAGTGGGAAGCCCGGAATAAATGAATCCATGTTTCTTAATGAGCAAGAAGAGAAAGTGCTCTTCAGACACTATGAGAAGAGATTGCTTGACTTCTGTGCCGTGTTCAAACCTGCTATGCCCAAATCTGTTGTGGGCACAGCTTGTATGTATTTCAGAAGATTCTATTTGAACAACTCTTTGATGGAGTATCACCCTCGGACCATAATGTTGACGTGTGCATATCTCTCCTGTAAAGTGGATGAGTTTAATGTGTCCAGCACTCAGTTTGTAGGGAACCTTCAAGAGAGCCCTGCAGGACAGGAGAGGGCTCTAGAACAGATTCTGGAGTATGAGCTGCTTCTTATCCAGCAGCTCAATTTTCATCTAGTTGTTCACAATCCTTATCGGCCTTTGGAGGGTTTTCTGATTGACCTGAAAACCAGATACCCTTTGTTAGAGAACCCAGAGATGCTGAGAAAGAGCGCAGAAGACTTCCTCAACAGAGCATCAATGACAGATGCTGGACTCCTTTTTTCTCCATCTCAGATTGGCCTTACCGCCATCCTTAACGGTGCAGCACGCGCTGGCCTCAAGATGGAGGCATATTTGACAGAATGCATGGGGCTTAAGGAGGACAAAGAGACCCTCTCAAAGATGTATGAGTCAATGAGACGTATAACAAGTCTTGTTAAAGCATATGAGCTTCCCAAAGCCGAGGAGGTCAATGCCTGCAAACAGAAACTGGAAAGGATTCATGCTGAATTTGCTACAAACCTGAAAAGAAAACATGGGTATGAGGATGATGATCACGTCGTGAAAAGGCAGATGGTGGCTGAGGAAGAGTGGACTGATGAGGATTTGGATGCATTGTGactataaaattgtttttaaatggacCTCATCCTCTCCGAGCAGGTTGTGTCATTCCTTTTGACACTTGCCGTAACTGACAGAGGATGCACTTCTCAAAGGGGattgtaaatatttcagcaaaatgtcatgtaatgctttttcttctgtaaaaataaaacattattttttatttacataa
>XM_043239050.1
GTACGCGACGCGTTCTCGCGCATGTCAACTGTTAAAACATTGTTTGAAACAAAGATCAGCCAAATCTGTTAAAatcgtttaatatttttacgaCCGTCCAGACGGAGCGTCACCGTGTGCCCAAGAGGGTGAGACAGAAATCTTTATATTCAACATGTATCACAACAGCTCTCAGAAGAAATTCTGGACTTACGATAAAGAGGAATCCTTAGATAAATTAAGACTAGAAGCTAATCGGAAGTTCTGCTCAAAAGGCTTGACCAGTGGGAAGCCCGGAATAAATGAATCCATGTTTCTTAATGAGCAAGAAGAGAAAGTGCTCTTCAGACACTATGAGAAGAGATTGCTTGACTTCTGTGCCGTGTTCAAACCTGCTATGCCCAAATCTGTTGTGGGCACAGCTTGTATGTATTTCAGAAGATTCTATTTGAACAACTCTTTGATGGAGTATCACCCTCGGACCATAATGTTGACGTGTGCATATCTCTCCTGTAAAGTGGATGAGTTTAATGTGTCCAGCACTCAGTTTGTAGGGAACCTTCAAGAGAGCCCTGCAGGACAGGAGAGGGCTCTAGAACAGATTCTGGAGTATGAGCTGCTTCTTATCCAGCAGCTCAATTTTCATCTAGTTGTTCACAATCCTTATCGGCCTTTGGAGGGTTTTCTGATTGACCTGAAAACCAGATACCCTTTGTTAGAGAACCCAGAGATGCTGAGAAAGAGCGCAGAAGACTTCCTCAACAGAGCATCAATGACAGATGCTGGACTCCTTTTTTCTCCATCTCAGATTGGCCTTACCGCCATCCTTAACGGTGCAGCACGCGCTGGCCTCAAGATGGAGGCATATTTGACAGAATGCATGGGGCTTAAGGAGGACAAAGAGACCCTCTCAAAGATGTATGAGTCAATGAGACGTATAACAAGTCTTGTTAAAGCATATGAGCTTCCCAAAGCCGAGGAGGTCAATGCCTGCAAACAGAAACTGGAAAGGATTCATGCTGAATTTGCTACAAACCTGAAAAGAAAACATGGGTATGAGGATGATGATCACGTCGTGAAAAGGCAGATGGTGGCTGAGGAAGAGTGGACTGATGAGGATTTGGATGCATTGTGactataaaattgtttttaaatggacCTCATCCTCTCCGAGCAGGTTGTGTCATTCCTTTTGACACTTGCCGTAACTGACAGAGGATGCACTTCTCAAAGGGGattgtaaatatttcagcaaaatgtcatgtaatgctttttcttctgtaaaaataaaacattattttttatttacataa
>XM_043239051.1
TTTTTACGAATCGCTACATCATCTACCGTAATTCCGTTCTCACGAGAAGCATCGATCCACCTCAGGACCGCAGCTTCTACCCGAGGCGTCTTGCGGGATGGGAAGACGGTCCTGGGAAGCTTTATATTCAACATGTATCACAACAGCTCTCAGAAGAAATTCTGGACTTACGATAAAGAGGAATCCTTAGATAAATTAAGACTAGAAGCTAATCGGAAGTTCTGCTCAAAAGGCTTGACCAGTGGGAAGCCCGGAATAAATGAATCCATGTTTCTTAATGAGCAAGAAGAGAAAGTGCTCTTCAGACACTATGAGAAGAGATTGCTTGACTTCTGTGCCGTGTTCAAACCTGCTATGCCCAAATCTGTTGTGGGCACAGCTTGTATGTATTTCAGAAGATTCTATTTGAACAACTCTTTGATGGAGTATCACCCTCGGACCATAATGTTGACGTGTGCATATCTCTCCTGTAAAGTGGATGAGTTTAATGTGTCCAGCACTCAGTTTGTAGGGAACCTTCAAGAGAGCCCTGCAGGACAGGAGAGGGCTCTAGAACAGATTCTGGAGTATGAGCTGCTTCTTATCCAGCAGCTCAATTTTCATCTAGTTGTTCACAATCCTTATCGGCCTTTGGAGGGTTTTCTGATTGACCTGAAAACCAGATACCCTTTGTTAGAGAACCCAGAGATGCTGAGAAAGAGCGCAGAAGACTTCCTCAACAGAGCATCAATGACAGATGCTGGACTCCTTTTTTCTCCATCTCAGATTGGCCTTACCGCCATCCTTAACGGTGCAGCACGCGCTGGCCTCAAGATGGAGGCATATTTGACAGAATGCATGGGGCTTAAGGAGGACAAAGAGACCCTCTCAAAGATGTATGAGTCAATGAGACGTATAACAAGTCTTGTTAAAGCATATGAGCTTCCCAAAGCCGAGGAGGTCAATGCCTGCAAACAGAAACTGGAAAGGATTCATGCTGAATTTGCTACAAACCTGAAAAGAAAACATGGGTATGAGGATGATGATCACGTCGTGAAAAGGCAGATGGTGGCTGAGGAAGAGTGGACTGATGAGGATTTGGATGCATTGTGactataaaattgtttttaaatggacCTCATCCTCTCCGAGCAGGTTGTGTCATTCCTTTTGACACTTGCCGTAACTGACAGAGGATGCACTTCTCAAAGGGGattgtaaatatttcagcaaaatgtcatgtaatgctttttcttctgtaaaaataaaacattattttttatttacataa

Function

symbol description
ccnh Predicted to enable cyclin-dependent protein serine/threonine kinase regulator activity. Predicted to be involved in phosphorylation of RNA polymerase II C-terminal domain and regulation of cyclin-dependent protein serine/threonine kinase activity. Predicted to act upstream of or within transcription, DNA-templated. Predicted to be part of transcription factor TFIIK complex. Predicted to be active in nucleus. Is expressed in several structures, including immature eye; liver; nervous system; neural tube; and pleuroperitoneal region. Orthologous to human CCNH (cyclin H).

NR:

description
cyclin-H isoform X1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity biological_process
GO:0070985 transcription factor TFIIK complex cellular_component
GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity molecular_function
GO:0019901 protein kinase binding molecular_function

KEGG:

id description
K06634 CCNH; cyclin H

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043239049.1 True 1304 mRNA 0.43 10 17586823 17591447
XM_043239050.1 False 1292 mRNA 0.42 10 17586823 17591422
XM_043239051.1 False 1270 mRNA 0.43 10 17586823 17592357

Neighbor

gene id symbol gene type direction distance location
LOC122344712 ckmt2b,ckmt2,LOC107720280 coding downstream 202675 17382031 ~ 17384148 (-)
LOC122345546 LOC107699749,LOC107587493,LOC107756319,LOC107703272,LOC107567144,LOC107720200 coding downstream 227082 17354929 ~ 17359741 (-)
LOC122344736 apba1,apba1a,LOC107587500,LOC107720269,LOC107756314,LOC107567151 coding downstream 241208 17329196 ~ 17345615 (-)
LOC122345238 cfap157,LOC107587652,LOC107672550,LOC107731015 coding downstream 265765 17316381 ~ 17321058 (-)
LOC122344899 LOC107663257,LOC107742022,LOC107570120 coding downstream 326876 17258466 ~ 17259947 (-)
tmem161b tmem161b,LOC107720188,LOC107660970,LOC107669514,LOC107753179,LOC107553926 coding upstream 23856 17616213 ~ 17632162 (-)
mef2cb mef2cb,mef2c,LOC107720185 coding upstream 94144 17686501 ~ 17755766 (-)
mblac2 mblac2,LOC107669518,LOC107720183,LOC107753186 coding upstream 301151 17893508 ~ 17895933 (-)
lysmd3 lysmd3,LOC107720182,LOC107660979,LOC107553928,LOC107756288,LOC107669503 coding upstream 307407 17899764 ~ 17904335 (-)
arrdc3a arrdc3a,LOC107720180,LOC107660973,LOC107669509,LOC107756289,LOC103032997,LOC108426240 coding upstream 434864 18027221 ~ 18034972 (-)
G37363 NA non-coding downstream 234413 17351315 ~ 17352410 (-)
G37340 NA non-coding downstream 421671 17162677 ~ 17165152 (-)
G37310 NA non-coding downstream 695633 16890704 ~ 16891190 (-)
G37309 NA non-coding downstream 696505 16889042 ~ 16890318 (-)
LOC122345772 NA non-coding downstream 727847 16858600 ~ 16858976 (-)
LOC122345155 NA non-coding upstream 53739 17646096 ~ 17686024 (-)
G37427 NA non-coding upstream 75902 17668259 ~ 17692145 (-)
G37439 NA non-coding upstream 299600 17891957 ~ 17893318 (-)
G37453 adgrv1,LOC107669515,LOC107660972 non-coding upstream 354190 17946547 ~ 17946764 (-)
G37455 adgrv1,LOC107660972,LOC107669515 non-coding upstream 362143 17954500 ~ 17954747 (-)
LOC122344738 acsl1b,LOC107571490,LOC107678619,LOC107758469,LOC107552354,LOC108274927 other downstream 236443 17346469 ~ 17350380 (-)
LOC122345693 NA other downstream 726892 16787809 ~ 16859931 (-)
G37277 ncam1a,LOC107681081,LOC107548183,LOC107756101 other downstream 873656 16687260 ~ 16713167 (-)
G37258 ncor2,LOC107687981,LOC107684513,LOC107753125 other downstream 953702 16596855 ~ 16633121 (-)
LOC122344728 uprt,LOC107733222,LOC107672530,LOC107680369,LOC107748634 other downstream 1208308 16376266 ~ 16378515 (-)
mtx3 cmya5,mtx3,LOC107699728,LOC107703257,LOC107720274,LOC107756304,LOC107555495,LOC107756305,LOC107720223,LOC107703259 other upstream 1583106 19175463 ~ 19183978 (-)
kcnt1b LOC107720246,LOC107699766,LOC107672542 other upstream 2272662 19865019 ~ 19935576 (-)
G38058 NA other upstream 2459302 20051659 ~ 20055798 (-)
G38140 si:ch211-236k19.4,LOC107552622,LOC107740829,LOC107699705,LOC107731026,LOC107672535,LOC107587659 other upstream 2533232 20125589 ~ 20127390 (-)
LOC122345844 ppil3 other upstream 2802374 20394731 ~ 20396734 (-)

Expression


Co-expression Network