CI01000004_15867404_15875293


Basic Information

Item Value
gene id CI01000004_15867404_15875293
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 15866985 ~ 15875304 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_15867404_15875293.mRNA
GAATAAAAAGGAAAGAAAAAGCAAGCATAAAAGAACATATAGATTACATATAGGTTTTTATGAACGAGGAAGTCATGAACTAGAACCGCTGAAAACATGTCTGGAGCTGAATGCTCCTAACCTGTGAATCTGAGTTGGTTGTGATAATTAATTTTAATCTCTGTGGGCCTGGTCTGACAGAATATTGTCCATAGACACAAGAATATAAGAGTCCATCCCAGAGAATGACCACCTAGGCAATGACATAGAGCAAGAGAAAACTTGTATTTTTATTCAGTTAGGTTTGAATGTGAGATATTAAACAGACTGTATGTTTAAAACACTATGGCACAATATTTTAGAGTTATTCTAAATAGTAACGCATACTGATTTGTAAGTAATAATGAATATTCCTATAGGTGAAGTTGACACACAGTGACATGATTCAGAGGAAAATTATTCAGGAGAAAGCAGATTCAATGTCCAGCCGATCAGACGCTGCTGAACACTCATCTGAGGCGAGACAGTACATGTTTAAGGGTGTAGGAACTGGAAGCATTCACGCTAAGGATGAGAATATTGTGCATGGTGCAATCATTGGCTATAATGACGGTCTGTTAGAGAACAGCAAAATCAAGGGGAAAGCTGCCGTTTTCAGCCAGTTGTTTAAAAGAACTTCTAAAAAGTTGACGAGTCTCCCTGCACAAGAGAATGGCTTTGCTGCCACCACTGATAGTTTGTCCAACCAACACAGCAATAAGACAGAACTATCATTACAACATGGAGAACTCTCAGCCGGCAATCACAACCAAACAGAAAACAACAACACCAAGGAAGAAACAGCATTGGAAAATGAGGATTTTTCAGTCAGTGAGAGTCTTGATAACTCAGGGAAGCTTAGTGGCACTTTCCGCAGTTCCCCAAAACCGGCATTACGTTTCGCTGCTGAGACGGATCCGCTAAGTGAGCACAGTAAATGTATTGACTGGGATTACAGCTTCCTGGACTCTGGCACTGAAAAGAAATCTATTGCAGTGTCCAGAAAATGCACAGCAAATGATGATATGAAACTCTCTAAAAGTAATACCAAGTTTGTGTCATTTAGAGTGAAGAGAACTCTACCTAAAATGCCCACATTTTTACCCAGTACGCAGGATTTTGAAATACTGCCAGTGGAAATGGCTGCCTACCCTACAGATTTCAATTCTTTAAAGACAGATGAGGATGATGGCCTGATGGACTGGTGGGAAACTGTCGAGGGTTGGAGTGAATGGAATGAAACAGCAAATTTTCAGGAGAATAAGGAGGAGCTGATTGTCGAGGCTGCTGCAGACCGTGTGTTCATGGCAGCCCGTCTCTTTGTCAGTCTATTCAACCAGCGTGGAGCCTCTCTGCAACGTCGCATTGTAGAGTTGCTTGCACTAGCGGACACTGCTGACAGCTTCCATAAGAAGGCCGTGAGCGCAGCTGTCGGAGGGGGTGTGGCTAGTGTGGCCGGGAGCATAGCCACAATTACCGGCCTCATCCTGGCACCCTTCACCTTTGGCACCTCCGTTATCGTTACTGCGGTGGGTATCAGTGTGGCAACAGCTGGGAGCATCACCTCAGCCACAGCTAACATCACGGATGCGGTTCAATCCAAGATGGACCGCAAGAAGGTGGAAAAGATGATACAGGGCTACCAGAATGAGATCAATGACATAAGAGATTGTCTGGAATTCATGCAAGAAGGAATGAACACCCTGCAAGAATGGGATTTTAAGGAGTACTCTGAGAGTGTGGTCAACACGAGTCTTAGCCGTAACATAAAGCATGTGATGAAGGAAGGTGGGCGAGCAGGTAAAGCGCTCATGATTAACACTGATAGGCTTATCAGCACTGTGAAAGTACTAGGTGTTGCCGGAGGTGCCGCCAAAGCCGCCAAGGCCATCAGTATCACCACAGGGGTCATGTCCACTCTCTTTCTTGCCCTGGATGTCTTTTTTCTTGCTAAAGACTCCAATGAACTCCGCAAAGGTGCCAAGACCAAATTTGCTTCCAAGATCCGAGAAGTATGCAAAGAGCTTCAACACGGCCTCCTGGAACTAAACAAAGTGAAGACTCAGCTTCAGAAGACCATGGATGGAATTGAAGTGGAAGAATATGAAGAAGAGGAGGAGGATGAAGACAGATGTGAGTCAGATCCTATTAATCTGGCTCTACTTGAGAAAGAACTTGATCAGTTGGAGGAGAAACTTGACCAGAAAACTACACATGAGCAAATGAACAAAAGCAAGACAGGAGAGGCTGAAAAAGAGACCACAAAAAAGAAAGAAAATGAGCAGTCAAAGAGCAAAAAGCAGTGATAAAAATGATA

Function

NR:

description
novel protein similar to human apolipoproteins

GO:

id name namespace
GO:0006869 lipid transport biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_15867404_15875293.mRNA True 2335 mRNA 0.44 16 15866985 15875304

Neighbor

gene id symbol gene type direction distance location
CI01000004_15859240_15861471 APOL1 coding upstream 3536 15859240 ~ 15863449 (+)
CI01000004_15825817_15827475 TEP1 coding upstream 39382 15825817 ~ 15827603 (+)
CI01000004_15787382_15803133 NA coding upstream 63841 15787382 ~ 15803144 (+)
CI01000004_15711867_15722470 PARP2 coding upstream 144403 15711867 ~ 15722582 (+)
CI01000004_15694735_15698103 SDR39U1 coding upstream 168564 15694735 ~ 15698421 (+)
CI01000004_15892502_15900203 DCAF8 coding downstream 15069 15890373 ~ 15900852 (+)
CI01000004_15906907_15909647 HNRNPC coding downstream 31603 15906907 ~ 15909669 (+)
CI01000004_15930478_15944692 NA coding downstream 55174 15930478 ~ 15944744 (+)
CI01000004_15947153_15953245 NA coding downstream 71849 15947153 ~ 15953870 (+)
CI01000004_16008731_16013012 NA coding downstream 133311 16008615 ~ 16013049 (+)
G34205 NA non-coding upstream 23583 15843132 ~ 15843402 (+)
G34196 NA non-coding upstream 86361 15779675 ~ 15780624 (+)
G34195 NA non-coding upstream 87487 15779166 ~ 15779498 (+)
G34194 NA non-coding upstream 89634 15777033 ~ 15777351 (+)
G34193 NA non-coding upstream 89977 15776790 ~ 15777008 (+)
G34213 NA non-coding downstream 11974 15887278 ~ 15887534 (+)
G34214 NA non-coding downstream 45379 15920683 ~ 15920886 (+)
G34215 NA non-coding downstream 48400 15923704 ~ 15924496 (+)
G34216 NA non-coding downstream 53197 15928501 ~ 15928750 (+)
G34228 NA non-coding downstream 139602 16014906 ~ 16015106 (+)
CI01000004_15091390_15096502 GA45B, GADD45B, GADD45BB other upstream 775016 15091200 ~ 15097173 (+)
CI01000004_14036114_14036449 KIAA0040 other upstream 1830085 14035393 ~ 14039142 (+)
CI01000004_12646972_12652534 NA other upstream 3211274 12646838 ~ 12652570 (+)
G31865 NA other upstream 3671838 12192130 ~ 12197418 (+)
CI01000004_11666900_11667179 NA other upstream 4199326 11666900 ~ 11667659 (+)
G34220 NA other downstream 64053 15939357 ~ 15939950 (+)
G33815 NA other downstream 188111 16063415 ~ 16066464 (+)
G34400 NA other downstream 1102024 16971995 ~ 17025976 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location