tcn2 (tcn2,LOC107595007,LOC107709872,LOC107673413,LOC107672782,LOC107750173,LOC107592334)


Basic Information

Item Value
gene id tcn2
gene name tcn2,LOC107595007,LOC107709872,LOC107673413,LOC107672782,LOC107750173,LOC107592334
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 9808869 ~ 9813130 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043239068.1
TAAACAAACTGACGTTTGGGAGGAAAGAGGaactttttgtgcttttaaacgttAGGGAAAAAACGctagaagaaaataaattaattcaagacgcaaaaattaataaaacagataATTTAGAGCACAGGTCGACAATAGGTTGCAAAACTACAAACTCTGTAGATGAGTAACTAACTCCACCTCTGCTCGCTGTCATAATGTGTTAGTAGTTCATTTTTAACTGGATTCAACAGGATACCTAACTTGGCATTAAAATGATGACTCTTGTCATTGTGAGCGCGCTGCTGGCGCTGGCTGCTGGAAAACCTTGGGCATCAGATCACGAGGCTCTTCTCCTGTCCCTCAACAAGCAGCTGCTGCAGTCAGTGAACACGCAGGATACCTTACCCAATCCCAGTGTGCACATCGCCCTGCGGCTATCAGCTCTACATAATCTAGCCAAAGAGAGCGAACATCTCAACCGCATCAAGACAGAGTTTCATGATGATATTGAGAAGTCTCTCGGAAATAATGAATTGGTGGTTGGCCGTCTAGCTCTGTACATCTTGGCTTTGAAGTCTTCCTGTCATGATCTGGAGAGTGTACATCTCACTCATAATGAGATGAAGGAGTCTCTCCTCATTCACCTGAAGAAAGAGATggaggaagaaaaacagaacattGCATTCGGTCACCGTCCAAAGACCAACTACTACCAGTACTCTCTAGGTATACTGGCTCTGTGTGTGAGCGGTGTTAGAGTCAGCACACACGTCAGCCAAAAGCTCATCCATGCTGTGGAACATAAACAGTTAAAACACGGAGAGTCCTTATGTGTCGACTCGCATGCAATGGCAGGCATGGCTCTGCAGTGTCTAAAAGATGAGGGAATTGCTGTTAAAGATAATGCAGAGCTAGACAGGGTTCTTGCCACCATTAAGCAGAGGCTTCTTGACTCAAAGAGAGCTGATGGTCACATGGGCAATGAGTTCAGCACAGGATTGGCGGTGCAGGCCTTGATGGCTATGGGCAGTCAGATGGAGGAATGTGGCTCTGCTATTGAGGCTTTAAGGGAAGATGTTAAGAAAGGAACATACCATAACCCTATGGCCATGTCTCAAGTCCTGCCAGCTCTACACCAACGCACTTACCTTCATCTGAAGAGGCAAGAATGCCGCAACGAGGACGACACTTTGACTATTGATGCGGATTCCCCTTCGGAAGTCCTCCCAAGTCTCGGGCAAGTGCCACTAGAGGTGGAGGTTATTAAATCAAACGGTGCATCGTCTGTGTTTTTCATTCATGCACCCAAGGGCTCATCTCTATTTGAAGCCCTCAAACTGCTCCAAGACAAACAAACTGGTTTCACCTTTAGCACAGAGGACAGCTTGTGGGGACCCTTCCTCAGTGTGATCAATGAAGAACAAGCACGCCAGACTGATCGTAGATACTGGCACATCTCCTCAGATGGCAGCTCTCTGACACAGGGTATCAAAGACTATAAGATTGATTCAGCTCAAAAAATCACCATTAAGAACACTGGATATTGATTATTTTCCTGGAAGCAAGAGAagagattaataaaataaaacctaaatatgCTTATGAATCTATGCATATAgtagtttgattttattttcatgtcgTAAGCAACATTGAAGGTCGCCTCACTGATGGCCGCCTCAGTTTGCTTGACTAATTGAAGGTTTAGTTTATGGGATTATTTAGGGATGTAATATGCTTATATCTTTTGAAATCtaacatatatttttgtgtgagaCTGCAGCTGCTATGAATCTAGatgaacaaatgtaaaataaaaactactaatattttaaaaa

Function

symbol description
tcn2 Enables cobalamin binding activity. Predicted to be involved in cobalamin transport. Predicted to act upstream of or within cobalt ion transport. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in intestine; liver; and yolk syncytial layer. Human ortholog(s) of this gene implicated in Parkinson's disease; congenital intrinsic factor deficiency; megaloblastic anemia; pernicious anemia; and transcobalamin II deficiency. Orthologous to several human genes including TCN2 (transcobalamin 2).

NR:

description
PREDICTED: transcobalamin-2-like

GO:

id name namespace
GO:0015889 cobalamin transport biological_process
GO:0009235 cobalamin metabolic process biological_process
GO:0031419 cobalamin binding molecular_function

KEGG:

id description
K14619 TCN2; transcobalamin-2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043239068.1 True 1820 mRNA 0.43 10 9808869 9813130

Neighbor

gene id symbol gene type direction distance location
rabl6b rabl6b,rabl6,LOC107750171,LOC107672784,LOC107673384,LOC107709868 coding downstream 496 9798294 ~ 9808373 (-)
imp4 imp4,LOC107595005,LOC107709870,LOC107750176,LOC107592341,LOC107672800 coding downstream 12836 9792187 ~ 9796033 (-)
araf araf,LOC107709867,LOC107595004,LOC107673380,LOC107750175,LOC107672764 coding downstream 17135 9780838 ~ 9791734 (-)
tbx3b LOC107709835,LOC107592413,LOC107673376 coding downstream 51036 9754034 ~ 9757833 (-)
tm2d2 tm2d2,LOC107709865,LOC107673424,LOC107750179,LOC107672780 coding downstream 55912 9750652 ~ 9752957 (-)
si:ch211-102c2.8 LOC107595037,LOC107709829 coding upstream 3738 9816868 ~ 9829040 (-)
tmem150aa tmem150aa,LOC107750168,LOC107672765,LOC107673390,LOC107709874 coding upstream 18869 9831999 ~ 9841079 (-)
tango2 tango2,LOC107673391,LOC107595038 coding upstream 30184 9843314 ~ 9861374 (-)
naaladl1 naaladl1,si:ch211-214j8.1,LOC107595014 coding upstream 215344 10028474 ~ 10034404 (-)
gtf2h2 gtf2h2,gtf2h2c,LOC107672775,LOC107595044,LOC107592329,LOC107752507,LOC103032811,LOC102292669 coding upstream 229404 10042534 ~ 10046774 (-)
G34877 NA non-coding downstream 30631 9777633 ~ 9778238 (-)
G34871 NA non-coding downstream 42262 9766268 ~ 9766607 (-)
G34869 NA non-coding downstream 44337 9764073 ~ 9764532 (-)
G34704 NA non-coding downstream 560828 9246920 ~ 9248041 (-)
G34594 NA non-coding downstream 748055 9013306 ~ 9060814 (-)
G35035 NA non-coding upstream 468279 10281409 ~ 10296141 (-)
G35047 NA non-coding upstream 524617 10337747 ~ 10341167 (-)
G35107 NA non-coding upstream 565636 10378766 ~ 10378998 (-)
G35139 abca2,LOC107672707,LOC107730718 non-coding upstream 699800 10512930 ~ 10513285 (-)
G35142 NA non-coding upstream 703541 10516671 ~ 10517342 (-)
G34789 vps37b,LOC107594993,LOC107673398,LOC107656485,LOC107587312,LOC107709855,LOC107721558 other downstream 406246 9337828 ~ 9402623 (-)
vamp5 LOC107594989,LOC107681225 other downstream 588341 9215498 ~ 9220528 (-)
G34580 LOC107681240,LOC107709820,LOC107560234,LOC107715750 other downstream 878816 8929470 ~ 8930053 (-)
LOC122345093 NA other downstream 1131151 8674229 ~ 8677718 (-)
timm8b timm8b,LOC107717885,LOC107598437 other downstream 1377283 8429700 ~ 8431586 (-)
si:dkey-96l17.6 si:dkey-96l17.6,LOC107672751,LOC107738297,LOC107592400,LOC107744487,LOC108434467,LOC105902719 other upstream 511829 10324959 ~ 10335343 (-)
G35122 NA other upstream 648078 10461208 ~ 10461709 (-)
G35371 znf703,LOC107599934,LOC107672788,LOC107744445,LOC107687685,LOC107726392,LOC107592299 other upstream 1055234 10868364 ~ 10874064 (-)
G35384 NA other upstream 1110797 10923927 ~ 10926163 (-)
slc25a15b slc25a15b,LOC107744499,LOC107687678,LOC107599942,LOC107726376,LOC107672737 other upstream 1147181 10960311 ~ 10969118 (-)

Expression


Co-expression Network