ubash3ba (ubash3ba,ubash3b,LOC107709710,LOC107597727,LOC107677436,LOC107722770,LOC108259961)


Basic Information

Item Value
gene id ubash3ba
gene name ubash3ba,ubash3b,LOC107709710,LOC107597727,LOC107677436,LOC107722770,LOC108259961
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 8511602 ~ 8537027 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043239106.1
GGCTCCCCGGCGGGCTCCGTCCGCTGATAGGCCGCTTCCGCTTTCAGTCAAGCCCCATTCATAAATAAGTCATGCCTGGGAGGAACCGATGTAACAAGTATCGATAGATTTCGCTCGCGACGCGCCCGCCACAGCGTTTCTAACTACGCCCAGAGTCGCGCGTGGCTCCCGCGAGTCGCGTTTCCTCCCGCGGCGGACAGCGACGGCGGTGTTTGTCGATACGCGGAGCAAATGAGACTGACTTCCGACTGCTGACCCCTTTCTCGAACTGCAATGACATGAGCGCTCCAGCAGGAAGCTCGAATCATTTCGCGTTTAGAAACATTGTAGCGCGTCCGCCGAGACTTCTGTCCGCCCGACTGTGAAGGAATAATGGAGCGTATTTGAACCAGCCTTTAACGCAGACGCTGTAGCGCTCGACCCGATGTTTTAAACGTGCGTCGTGTCCGTCCGTTTGGACGCATCAAAAGTAAAATCGCCGTTCCGAAGCCAAATGGAAAGCTGAACCATGGCAGCAAAAGAGGACCTGTATGCCAAAGTCGCTCCGCGGATGCAGCGGCAGAACCGGCCGGGAACTGTCAAACATGGAAATAGTCTGGATGTTTTGCTGTCAATGGGCTTCCCTAAAACCAGGGCGCTAAAAGCTCTGGTTTCGACTGGGGGCAGAAATGTACAAGCAGCCTGTGACTGGTTGTTCTCCCATGTGGATGACCCGTTCCTGGACGATCCTTTACCCAGGGAGTACGTGCTGTACCTAAAACCCAGCGGTCCTCTCCTCAACCAGCTTTCCAACTTCTGGCAGCAGAGCCGCATCACATGTGGCAAGAACAAAGCCCACAACATCTTCCCTCACATAACCCTCTGCCAGTTCTTCATGTGTGCAGATGGCAAGGTAGATGCCCTCTGTGAAGCTCTGCAGGCAGTGGTGGGTCAATGGAGAGGTCGTTTCCCCTCCCCGCTCCCCCTGGAGTTTTATTCATCCTCAAACTTCATCGGCCTCTTTGTGGAAGAGAAGGTAGCTGAGGTGATCAAGAGCTTTGCAGCAGACTTTGCCACTGAGGCGGCTTCCAAagcagATGCTCATGTGGAGCCCCATAAAAAGCAGCTTCATGTAACTCTGGCCTACCACTTCCAAACCAATCATCTTGCATCATTAGAAAAACTTGCCAAAGGTGTAGACATAACCCTGGGCTGTGATTGGCAGGCTGTACTCTTGTCACGGGACATCCGATTCGCCAATCATGAGACCCTGCGGGTGATGTACCCTTATGTGCCTCAGAATGATGATGAACTGGAGCTGGTGCCCGGTGACTTCATCTTCATGTCATCTATAGAACAGACCACTGCCAGCGAGGGCTGGGTTTACGGGACCTCGATGAGCACCGGGTTATCAGGGCTACTGCCAGAAAACTACGTCAACAGGGCAGACGAGTGTGACACTTGGGTCTATCATGGgtctttctctttccttAATGGAACTCCTCCAACCAATATCAGGGGTGCAATGGGTGGGTTTTTTCTAGATCCACATTTGGATGGTCGTCTCCTTGATGACCCCATGCCATTGGATCCCCCTAGTCTTGGTGTTATATGTCAACCTATGCAGattctACGACCCAATCAGTCTCGTTTGCCTAAGAGAACGTTGTTTGTGTGTCGCCATGGTGAGAGAATGGATGTAGTGTTTGGGAAACACTGGATCACTCAGTGCTTTGATGCCAAAGgtcGGTATGTGCGGTCAAACCTCAATATGCCAGCGAGTCTCCCAGCGAGGAGTGGGGGGTACAGGGACTATGATAAGGACTGTCCTATCACTGTGTTCGGATCCACACAGGCTCGTCTAGTCGGGGAGGCTCTCCTGGAAAGTCATACAGTGGTAGACTTTGTGTACTGTTCTCCGTCTCTGCGCTGCGTGCAAACAGCTTATAATATCCTCAAAGGTCTTCAAAAGGATGGGAAGACTAAAATCAGAGTTGAGCCGGGGTTGTTTGAGTGGACTAAATGGGTGTCGGGAACCTCATTACCTGCCTGGATTCCTCCTGCAGACCTGGCAGCTGCAAACCTTAGTGTGGATACAACATACAGACCTCATATTCCTGTCAGTAAACTGGCCGTGTCAGAGTCCTATGAAACATACATCAGTCGCAGCTTCCAAGTGACGCGTGAAATACTGTCGGAGTGCAATAACCTGGGAAATACAGTGCTGATTGTGGCCCATGCTTCCTCTCTGGAGGCTTGCACGCGGCAGATACAGGGACTGACCCCACAGAACTCTAAAGACTTCGTGCAAGTGGTCAGAAAGATACCTTACTTAGGCTTTTGTGCTTGTGAGGAGATGGGCGAGACAGGTGTTTGGCAGCTTGTGGATCCCCCCATCCTGCCCCTCACCCATGGGCCCAATCACAGCTTTAACTGGAGAGAAACACTGCTGCAAGACTGAGAGCCTCAGCAACTTCTACCCACTCTGCTCTTCCTCCAAAGGCAACAGAGACGTGCTTACAGTTACATCATCACAGATCTGCATTATAGCACTGTAAACGACTCAAGCTTCCATAGCCACGTTCTTGCACTGCTGCAGTACACCTCACCGACCCCGTCTTAATATATAAAGCATAAGAGCAGTAATATTTGCGATAGCTAATCCATAACGCCATTTTCCGGCCTGCAGGCAAGCTGCGGCAGAACACATGCATCCAACTGTAGCCCAGACGAAACTAAAAATCTGAGCGCTTCAAAGACACGCGTCAAACACAGGATGTAATACACAGCGATAAACTCAGGTTTCCTGCCTCAGTGAGGAGGAAATAGTGTGCAAAGTTGATGAGTCATCATCCAAAACTTCCAAAATGGATGCCGCTGGTCTCTCCGAACCCTTTGCAAACTCCATTTTCCTAGACTCTGTAGGGGAGCGAGACTTCTCCCTATTACACTGTGAATCAAATAGACATGCACAACCTATTGCATCAAGATTTTCCCAATTACACCTGCTACAAGCCCGCTCACCAACCTCCTgaaagcacaagaatataatcTGGCAATCAGATAGACTCAGACCAAGCAGCTTTAAAGTAGTTTAGAAATGGATTTGGTGGACAGCACATTCGTCCTGTGCCTTGCTGTCATGCTGCTACTGTTAAACACTTTGCAACTATAGGACACTTTGGGAGGACTGTTAGTTAGGGCTTATTTGGACACAGTATTTAAAGATGTACTGTCAGGCTTTCCGCGTGTAGGATCGATGATAAATAAGAGATGATAGACCCAGTAAGGATGTCATCAAAAGGCAGTGCCACAAATGGTTTCAGTTTCTTAAGCAGCGGCTTAAATGATGTTACGTGCAGCTTTTACGCTGAACGGCGAGCTTTACTTTCTGAGCACTTGAAAAAAGCGAACCAAACAGGAAAGAATGCTTCAACAATGTAAAGAATTGTACATTAACGCATAACGTGTCTGTATATACTAAGTAACAAAGTAAAATCCATTTGACGTGTTTCacctttaaatggaaaaaatataattgcatttatttatgtattcatgaGATAGTTGTAAAGAGAATATGTTGGTgcttcaggtttttttttttttttttttgttcgtttgttaTTTCCTGTTATTGGAATAGAGAAACCAAGCCATAGCAAATGATGATATAAATCACTATATAATGCAGTGTTTCTCTACACTCAGAGCACTTGCATAAGCATATCTGTTACAATTACTGTAATATGCCATCTGTGTTCCCTGAACTTCATAACTATTTTAGCCCACCTATGGTTTGACATTTAATGATGATAAGGAGGAGGCATGCATAATGAGATGTGCAATGCACTGCGGTATCTTGCTATAGTTTTCAACATTTGCTCATATAGTGCATTTACATAAagataaatgttatgttttttcttttttttttttttttttttttttttttttctgttaaggTTAAGAGTTGATCTCTCGCCTAAATGGTTCCTGTTAGGGGATGAAAGGGACAGTTTTACCCAAAACGTCTTTCCGAACTTGTCTATTGCATGTCAGACATAGAAAAAAAGCAGACAATGAAACTGtcaataagaaataaataagtaaaagcaGCAGATGCACTAgatcaattgtttttttttttttttctacagtctAATGAAGTGAAGGAAGAGAATTTTTCTCTAGCTGGTTTAGCCATGTTGTTAGGTTGCTTTCACAGTTCACAATTTTGACGAAGCTGTGTATCCATAGCCATGGTATAAatctattttgtatatatttgggCCACGCTTTCAATACATTGAGAGTAAATGAGAACTTGTGTGTCTGCGTATGActactatacttttttttttttttttttgagatcaaAACGTTCTTAGAAATGTCTTCAACTTAACGATCCAACTGCATTTATAGCTAACAGCCCACTCAAAGGGAAGTAATACGTTAAACTATTTTTTGATACTTGTGCATCAAGTGACTATTTACTATAATTGCTTTCTGATTTTGCATTCCGTGATTTGGACCAGAGCTGATGTGAGCAAATTTTGACTAAAGTTCTCGGTTTTGGGTGTACTATCCctttcaaacatttcagattaCGGGGAGTCTGAGGCAAATCTGTCTTCATTCGTTTGGCATTTTCCAGCTCATCAGTAACATAACCTTCTAAAAGCTTCCTACTCGTGAATTTAAGCGAGACAGCACATGCGACTTTGTGGAGATTTCTAATTAGCCAAGccagtgtaagtgtgtgtgggtgtggttGAGTGTTTGCTCATGTGCTAGAAGATGAAAATGCTGTTCTGCCATAAAAAGTAATGACCTTATTAAATCATCCTCGTCTGCTATTACAACATGTCTACCGTGAATAGATCCTTGTTCTTCCAAATAACACACAAGCATCATGTGTATAAGTATCTGTTACCGCAGAGGGTTGAATGAGTGCAGCTTGACAAAAGCTGATCCATGACTGTGTTTGATTCCTTGAGAGGTAACACCGTCACTGTACGTTTTCAGAAGCATGCTATGTGCGCGacttcttctgattgtttgaAAAGGAATGGGGGTGGAATATGAGCcaaagtgctttatttttttttttttttttttttttttttttttttttttttagttattattttgttcCCCAGAGGcagaattaattatttttaatacatgtacTTTAAGCATATTCTGACCAACAATTAGCGTTTTGGCCATGAGGGTTTGTGTTCGTCCTAATGAATCACGAGTTGTTTTATATGCCCTACTGATCAGTGACCGGggaaatcaataaatacacaaaacagtAAGAAATATAACCAGTGTATTACAGATTGTTATTTTTACtctgtattttaattgttatttctcCTCCCTGAAATGAGTCATGTTTAGTTTATATAAGActttatgcttttattcaggtcatctaatttatttaaagttattcaAGTTTTTCCTTGGGGGCATTTTAGCAGCTTGAAAATTATCCTTGCATGCCCAagaagaaaatgcaaatgtaacaCCTCCATAGTGAAAAGTTGTACATGAAATGAATGCACAAACCATATGTTATAGTTCAGCGCTCAAAAATTTGAATAGAGATTCCAAAAGCATATGTGACATTCCTCCACAAAGCTACCTTTTTAAGTACGAttgttgacttttattttaaaaatttattttaatgcgtaATGTTCGTAAAGCATGTTTGCAAATAAATCTTTTGTCATCCTGCA

Function

symbol description
ubash3ba Orthologous to several human genes including UBASH3B (ubiquitin associated and SH3 domain containing B).
ubash3b Enables identical protein binding activity. Predicted to be involved in several processes, including collagen-activated tyrosine kinase receptor signaling pathway; negative regulation of bone resorption; and platelet aggregation. Predicted to act upstream of or within several processes, including negative regulation of osteoclast differentiation; negative regulation of platelet aggregation; and platelet activation. Predicted to be located in nucleus. Predicted to be active in cytoplasm.

NR:

description
ubiquitin-associated and SH3 domain-containing protein B-like

GO: NA

KEGG:

id description
K18993 UBASH3, STS; ubiquitin-associated and SH3 domain-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043239106.1 True 5735 mRNA 0.43 14 8511602 8537027

Neighbor

gene id symbol gene type direction distance location
adamts15a adamts15a,LOC107681261,LOC107717868,LOC107722794,LOC107677442,LOC107587336 coding downstream 125208 8369572 ~ 8386394 (-)
c5h11orf53 zgc:158412,cunh11orf53,LOC107597648,LOC107677422,LOC107722790,LOC107587338,LOC107717870 coding downstream 223913 8282392 ~ 8287689 (-)
stk36 stk36,LOC107598122,LOC107722762,LOC107717884 coding downstream 229444 8271949 ~ 8282158 (-)
hmbsa hmbsa,LOC107717875,LOC107722788,LOC107597563,LOC107587344 coding downstream 301413 8203420 ~ 8210189 (-)
dpagt1 dpagt1,LOC107587348,LOC107717886,LOC107597531,LOC107722798 coding downstream 336245 8171423 ~ 8175357 (-)
f11r.1 LOC107597734,LOC107722768,LOC107709707,LOC107677438,LOC107681232,LOC107587332 coding upstream 665 8537692 ~ 8543385 (-)
f11r.2 LOC107681233,LOC107722769,LOC107587332,LOC107598159,LOC107677439,LOC107709686,LOC107597734 coding upstream 9554 8546581 ~ 8549533 (-)
usf1l LOC107709708,LOC107681234 coding upstream 24368 8561395 ~ 8567078 (-)
thy1 NA coding upstream 30055 8567082 ~ 8568987 (-)
si:ch211-215c18.3 si:ch211-215c18.3 coding upstream 32822 8569849 ~ 8574583 (-)
G34401 NA non-coding downstream 36422 8474979 ~ 8475180 (-)
G34400 NA non-coding downstream 38253 8472323 ~ 8473349 (-)
G34396 NA non-coding downstream 43743 8467620 ~ 8467859 (-)
G34395 NA non-coding downstream 46216 8464788 ~ 8465386 (-)
G34392 NA non-coding downstream 47999 8463373 ~ 8463603 (-)
G34573 LOC107681240,LOC107587323,LOC107709680,LOC107757966,LOC107690673 non-coding upstream 351959 8888986 ~ 8890348 (-)
G34574 LOC107709680,LOC107560234,LOC107715750,LOC107690673,LOC107681240 non-coding upstream 368380 8905407 ~ 8905624 (-)
G34575 NA non-coding upstream 379505 8916532 ~ 8916931 (-)
G34577 NA non-coding upstream 388025 8925052 ~ 8925317 (-)
G34578 LOC107715750,LOC107587423,LOC107709820 non-coding upstream 388643 8925670 ~ 8927031 (-)
timm8b timm8b,LOC107717885,LOC107598437 other downstream 80016 8429700 ~ 8431586 (-)
G34372 zbtb44,LOC107597664,LOC107717865,LOC107677410,LOC107587334,LOC107722796 other downstream 96796 8411882 ~ 8414806 (-)
si:ch211-117m20.4 si:ch211-117m20.4,LOC107663429,LOC107597540,LOC107717881,LOC107677428,LOC107677427 other downstream 347576 8160877 ~ 8164026 (-)
si:dkey-220k22.3 NA other downstream 789844 7718565 ~ 7721758 (-)
LOC122345606 LOC107712378 other downstream 799778 7706970 ~ 7711824 (-)
LOC122345093 NA other upstream 137202 8674229 ~ 8677718 (-)
G34580 LOC107681240,LOC107709820,LOC107560234,LOC107715750 other upstream 392443 8929470 ~ 8930053 (-)
vamp5 LOC107594989,LOC107681225 other upstream 678471 9215498 ~ 9220528 (-)
G34789 vps37b,LOC107594993,LOC107673398,LOC107656485,LOC107587312,LOC107709855,LOC107721558 other upstream 800801 9337828 ~ 9402623 (-)
si:dkey-96l17.6 si:dkey-96l17.6,LOC107672751,LOC107738297,LOC107592400,LOC107744487,LOC108434467,LOC105902719 other upstream 1787932 10324959 ~ 10335343 (-)

Expression


Co-expression Network