f11r.1 (LOC107597734,LOC107722768,LOC107709707,LOC107677438,LOC107681232,LOC107587332)


Basic Information

Item Value
gene id f11r.1
gene name LOC107597734,LOC107722768,LOC107709707,LOC107677438,LOC107681232,LOC107587332
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 8537692 ~ 8543385 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043239107.1
TTTGGTTTCAACCTTTCAGCTTATCTTGACTCAGCTGAGCTTTGCGAGGGCAAAGCGAGAACTCCTTGGAAGTTAGCTTAACCTGATTcgaacttgattttttttatttatttttatctttttttttaaaaaagttacattttggaAGACACCGGTGCATTTCAAAGTGGATATGTTGACCTTCGTGTTTGTGTGCCTCTCTATCTCTGTCACAGGCCTGCATGCCGATTTTACAGTTAGTGTTGGTAGCTCCTCTGTAAAAGTGAAAGAGAATGAGGgagTTGACTTGAAATGTTCCTACACTGCTGACTTCGGGGCAACACCCAGAGTAGAGTGGAAGTTCAAGGATCTCAAAGGCTCTCAAACGTTGATCTACTTTGACAACAAACCAACCGGTCAATATGCAGGCCGCATTACCATGTATAGCGGTGGACTGAGGTTTAACAAGGTGACACGAGCGGATACCGGAGACTATGACTGTGAGGTGTCTGGCAATGGTGGATATGGCGAGAATACCATCAAACTCACAGTTCTtgTGCCTCCTTCCAAGCCTGTATCCAGAATTCCTTCATCGGTCACAACAGGCAGTAACGTCCGTCTGACCTGCTTCGACACCGATGGCTCTCCTCCATCCACCTATAAGTGGTACAAAGAAAACGCTCCCCTCCCCGAGGATCCAACCAAGTTCCCCAGTTTTAAGAACCTCACCTACAAGATGAACATTTTCAATGGTAACCTGGAGTTCGTGAGTGTGTCTAAGTTGGATACTGGTTCATATTTCTGTGAGGCCAGTAATGGAGAAGGCTCTCCTCAGCGTGGGGATGCTGTGCGCATGGATGTCCAGGATCTGAATGTTGGTGGCATTGTTGCGGGGGTTATCGTGGCTTTGCTGGCAGTAGGATTGCTCCTCTTTGGTCTATGGTATGCCAGTAGAAAGGGATATCTGCCAAAAAAAGCAGAAAGCAAGCCAAAGCAAGCTGTTTATACGCAGCCCAGAACAGATGATATAGATGACGGAGATGGGGAATTCAGACAGAAGTCATCTTTTGTTGTGTAGTCTGTGCTACTCTGGATGAAATGTCAAGATTCAGTGCCTagatcaatgtttttttttgttttttgttcatacAATTAGCaccagtgcgtgtgtgtgggtgtgtcgAGAAATGCCCAAAAACTTTAAAGCAGCCACAGATTACAGATTTAGTTTTTGGAATCTAAGCCGGTTTTGTAgaaatgaatagaaatgtaatttattgaaCTATTATAAATCTGTGAGCGGTAACCTAAGGGGTTTGATATAAATTCCCTATCAATAGAATTTGCCCTGATTATAAGCAGCTGTTTAGTTTTGTGtgaactaatatatatatatatatgctatttttaCCTAACTGCACTATGAGATAGAAACTTCTTGGGGAAAAGAAGACGATATGAATGTTCCCCATTCAGGAAATAATGTCCCCTCCCGCTGTTCGTCGTAATCattgatattttgtttgtttactttacctgcatttttaatgataGTGTGccttgtgtgtattttatactttataatatgtaaatagaTCTGTCTTTTGGATGTGTTTTAGGATTTTACATAATGCTTAATTGACCTCGGAATTATTAATCTAGGAACAAATTACGAAACctttatatttcttttgtttgatcAAACTTTTAATGTGTGACCTGATCTCATTCTTTCAATAAATGGAATTTACTGAC
>XM_043239108.1
CGTTTGGTTTCAACCTTTCAGCTTATCTTGACTCAGCTGAGCTTTGCGAGGGCAAAGCGAGAACTCCTTGGAAGTTAGCTTAACCTGATTcgaacttgattttttttatttatttttatctttttttttaaaaaagttacattttggaAGACACCGGTGCATTTCAAAGTGGATATGTTGACCTTCGTGTTTGTGTGCCTCTCTATCTCTGTCACAGGCCTGCATGCCGATTTTACAGTTAGTGTTGGTAGCTCCTCTGTAAAAGTGAAAGAGAATGAGGgagTTGACTTGAAATGTTCCTACACTGCTGACTTCGGGGCAACACCCAGAGTAGAGTGGAAGTTCAAGGATCTCAAAGGCTCTCAAACGTTGATCTACTTTGACAACAAACCAACCGGTCAATATGCAGGCCGCATTACCATGTATAGCGGTGGACTGAGGTTTAACAAGGTGACACGAGCGGATACCGGAGACTATGACTGTGAGGTGTCTGGCAATGGTGGATATGGCGAGAATACCATCAAACTCACAGTTCTtgTGCCTCCTTCCAAGCCTGTATCCAGAATTCCTTCATCGGTCACAACAGGCAGTAACGTCCGTCTGACCTGCTTCGACACCGATGGCTCTCCTCCATCCACCTATAAGTGGTACAAAGAAAACGCTCCCCTCCCCGAGGATCCAACCAAGTTCCCCAGTTTTAAGAACCTCACCTACAAGATGAACATTTTCAATGGTAACCTGGAGTTCGTGAGTGTGTCTAAGTTGGATACTGGTTCATATTTCTGTGAGGCCAGTAATGGAGAAGGCTCTCCTCAGCGTGGGGATGCTGTGCGCATGGATGTCCAGGATCTGAATGTTGGTGGCATTGTTGCGGGGGTTATCGTGGCTTTGCTGGCAGTAGGATTGCTCCTCTTTGGTCTATGGTATGCCAGTAGAAAGGGATATCTGCCAAGTAAAAAAAGCAGAAAGCAAGCCAAAGCAAGCTGTTTATACGCAGCCCAGAACAGATGATATAGATGACGGAGATGGGGAATTCAGACAGAAGTCATCTTTTGTTGTGTAGTCTGTGCTACTCTGGATGAAATGTCAAGATTCAGTGCCTagatcaatgtttttttttgttttttgttcatacAATTAGCaccagtgcgtgtgtgtgggtgtgtcgAGAAATGCCCAAAAACTTTAAAGCAGCCACAGATTACAGATTTAGTTTTTGGAATCTAAGCCGGTTTTGTAgaaatgaatagaaatgtaatttattgaaCTATTATAAATCTGTGAGCGGTAACCTAAGGGGTTTGATATAAATTCCCTATCAATAGAATTTGCCCTGATTATAAGCAGCTGTTTAGTTTTGTGtgaactaatatatatatatatatgctatttttaCCTAACTGCACTATGAGATAGAAACTTCTTGGGGAAAAGAAGACGATATGAATGTTCCCCATTCAGGAAATAATGTCCCCTCCCGCTGTTCGTCGTAATCattgatattttgtttgtttactttacctgcatttttaatgataGTGTGccttgtgtgtattttatactttataatatgtaaatagaTCTGTCTTTTGGATGTGTTTTAGGATTTTACATAATGCTTAATTGACCTCGGAATTATTAATCTAGGAACAAATTACGAAACctttatatttcttttgtttgatcAAACTTTTAATGTGTGACCTGATCTCATTCTTTCAATAAATGGAATTTACTGAC

Function

NR:

description
junctional adhesion molecule A-like

GO:

id name namespace
GO:0048916 posterior lateral line development biological_process

KEGG:

id description
K06089 F11R, JAM1, CD321; junctional adhesion molecule 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043239107.1 False 1734 mRNA 0.40 10 8537692 8543383
XM_043239108.1 True 1740 mRNA 0.41 10 8537692 8543385

Neighbor

gene id symbol gene type direction distance location
ubash3ba ubash3ba,ubash3b,LOC107709710,LOC107597727,LOC107677436,LOC107722770,LOC108259961 coding downstream 665 8511602 ~ 8537027 (-)
adamts15a adamts15a,LOC107681261,LOC107717868,LOC107722794,LOC107677442,LOC107587336 coding downstream 151298 8369572 ~ 8386394 (-)
c5h11orf53 zgc:158412,cunh11orf53,LOC107597648,LOC107677422,LOC107722790,LOC107587338,LOC107717870 coding downstream 250003 8282392 ~ 8287689 (-)
stk36 stk36,LOC107598122,LOC107722762,LOC107717884 coding downstream 255534 8271949 ~ 8282158 (-)
hmbsa hmbsa,LOC107717875,LOC107722788,LOC107597563,LOC107587344 coding downstream 327503 8203420 ~ 8210189 (-)
f11r.2 LOC107681233,LOC107722769,LOC107587332,LOC107598159,LOC107677439,LOC107709686,LOC107597734 coding upstream 3196 8546581 ~ 8549533 (-)
usf1l LOC107709708,LOC107681234 coding upstream 18010 8561395 ~ 8567078 (-)
thy1 NA coding upstream 23697 8567082 ~ 8568987 (-)
si:ch211-215c18.3 si:ch211-215c18.3 coding upstream 26464 8569849 ~ 8574583 (-)
ddx31 ddx31,LOC107597806,LOC107741444,LOC107587329,LOC107690663 coding upstream 50679 8594064 ~ 8609276 (-)
G34401 NA non-coding downstream 62512 8474979 ~ 8475180 (-)
G34400 NA non-coding downstream 64343 8472323 ~ 8473349 (-)
G34396 NA non-coding downstream 69833 8467620 ~ 8467859 (-)
G34395 NA non-coding downstream 72306 8464788 ~ 8465386 (-)
G34392 NA non-coding downstream 74089 8463373 ~ 8463603 (-)
G34573 LOC107681240,LOC107587323,LOC107709680,LOC107757966,LOC107690673 non-coding upstream 345601 8888986 ~ 8890348 (-)
G34574 LOC107709680,LOC107560234,LOC107715750,LOC107690673,LOC107681240 non-coding upstream 362022 8905407 ~ 8905624 (-)
G34575 NA non-coding upstream 373147 8916532 ~ 8916931 (-)
G34577 NA non-coding upstream 381667 8925052 ~ 8925317 (-)
G34578 LOC107715750,LOC107587423,LOC107709820 non-coding upstream 382285 8925670 ~ 8927031 (-)
timm8b timm8b,LOC107717885,LOC107598437 other downstream 106106 8429700 ~ 8431586 (-)
G34372 zbtb44,LOC107597664,LOC107717865,LOC107677410,LOC107587334,LOC107722796 other downstream 122886 8411882 ~ 8414806 (-)
si:ch211-117m20.4 si:ch211-117m20.4,LOC107663429,LOC107597540,LOC107717881,LOC107677428,LOC107677427 other downstream 373666 8160877 ~ 8164026 (-)
si:dkey-220k22.3 NA other downstream 815934 7718565 ~ 7721758 (-)
LOC122345606 LOC107712378 other downstream 825868 7706970 ~ 7711824 (-)
LOC122345093 NA other upstream 130844 8674229 ~ 8677718 (-)
G34580 LOC107681240,LOC107709820,LOC107560234,LOC107715750 other upstream 386085 8929470 ~ 8930053 (-)
vamp5 LOC107594989,LOC107681225 other upstream 672113 9215498 ~ 9220528 (-)
G34789 vps37b,LOC107594993,LOC107673398,LOC107656485,LOC107587312,LOC107709855,LOC107721558 other upstream 794443 9337828 ~ 9402623 (-)
si:dkey-96l17.6 si:dkey-96l17.6,LOC107672751,LOC107738297,LOC107592400,LOC107744487,LOC108434467,LOC105902719 other upstream 1781574 10324959 ~ 10335343 (-)

Expression


Co-expression Network