Gene
RNA
| Item | Value |
|---|---|
| gene id | CI01000004_15892502_15900203 |
| gene name | DCAF8 |
| gene type | coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000004 |
| NCBI id | null |
| chromosome length | 17451736 |
| location | 15890373 ~ 15900852 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| symbol | description |
|---|---|
| dcaf8 | Acts upstream of or within glial cell development and retina development in camera-type eye. Predicted to be part of Cul4-RING E3 ubiquitin ligase complex. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in giant axonal neuropathy 2. Orthologous to human DCAF8 (DDB1 and CUL4 associated factor 8). |
| id | description |
|---|---|
| K11804 | DCAF8; DDB1- and CUL4-associated factor 8 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| CI01000004_15892502_15900203.mRNA | True | 4173 | mRNA | 0.44 | 10 | 15890373 | 15900852 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000004_15867404_15875293 | NA | coding | upstream | 15069 | 15866985 ~ 15875304 (+) |
| CI01000004_15859240_15861471 | APOL1 | coding | upstream | 26924 | 15859240 ~ 15863449 (+) |
| CI01000004_15825817_15827475 | TEP1 | coding | upstream | 62770 | 15825817 ~ 15827603 (+) |
| CI01000004_15787382_15803133 | NA | coding | upstream | 87229 | 15787382 ~ 15803144 (+) |
| CI01000004_15711867_15722470 | PARP2 | coding | upstream | 167791 | 15711867 ~ 15722582 (+) |
| CI01000004_15906907_15909647 | HNRNPC | coding | downstream | 6055 | 15906907 ~ 15909669 (+) |
| CI01000004_15930478_15944692 | NA | coding | downstream | 29626 | 15930478 ~ 15944744 (+) |
| CI01000004_15947153_15953245 | NA | coding | downstream | 46301 | 15947153 ~ 15953870 (+) |
| CI01000004_16008731_16013012 | NA | coding | downstream | 107763 | 16008615 ~ 16013049 (+) |
| CI01000004_16017111_16024481 | SALL2 | coding | downstream | 116133 | 16016985 ~ 16024782 (+) |
| G34213 | NA | non-coding | upstream | 2839 | 15887278 ~ 15887534 (+) |
| G34205 | NA | non-coding | upstream | 46971 | 15843132 ~ 15843402 (+) |
| G34196 | NA | non-coding | upstream | 109749 | 15779675 ~ 15780624 (+) |
| G34195 | NA | non-coding | upstream | 110875 | 15779166 ~ 15779498 (+) |
| G34194 | NA | non-coding | upstream | 113022 | 15777033 ~ 15777351 (+) |
| G34214 | NA | non-coding | downstream | 19831 | 15920683 ~ 15920886 (+) |
| G34215 | NA | non-coding | downstream | 22852 | 15923704 ~ 15924496 (+) |
| G34216 | NA | non-coding | downstream | 27649 | 15928501 ~ 15928750 (+) |
| G34228 | NA | non-coding | downstream | 114054 | 16014906 ~ 16015106 (+) |
| G34229 | NA | non-coding | downstream | 118411 | 16019263 ~ 16019489 (+) |
| CI01000004_15091390_15096502 | GA45B, GADD45B, GADD45BB | other | upstream | 798404 | 15091200 ~ 15097173 (+) |
| CI01000004_14036114_14036449 | KIAA0040 | other | upstream | 1853473 | 14035393 ~ 14039142 (+) |
| CI01000004_12646972_12652534 | NA | other | upstream | 3234662 | 12646838 ~ 12652570 (+) |
| G31865 | NA | other | upstream | 3695226 | 12192130 ~ 12197418 (+) |
| CI01000004_11666900_11667179 | NA | other | upstream | 4222714 | 11666900 ~ 11667659 (+) |
| G34220 | NA | other | downstream | 38505 | 15939357 ~ 15939950 (+) |
| G33815 | NA | other | downstream | 162563 | 16063415 ~ 16066464 (+) |
| G34400 | NA | other | downstream | 1076476 | 16971995 ~ 17025976 (+) |
| species | gene id | symbol | gene type | chromosome | NCBI id | location |
|---|---|---|---|---|---|---|
| zebrafish (Danio rerio) | XLOC_015742 | dcaf8 | coding | NC_007113.7 | CM002886.2 | 38002717 ~ 38020603 (+) |
