bckdk (bckdk,LOC107685622,LOC107681895,LOC106603456)


Basic Information

Item Value
gene id bckdk
gene name bckdk,LOC107685622,LOC107681895,LOC106603456
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 21967987 ~ 21984219 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043239119.1
TAAACACCAGAAGAGACGGCTAATTTCACATCTAGAGACGTGATGGTGCCAGAGACGTGCCTTTGTGCACGAAAGAGCTCGCTGTGTCGGATGGCGAGGTAGACGGATTCTGAAACCAAGGGCAGGGGATTGAGTTTTCTTATTTCTGTTATCCAAGTGTAGAAATGCACGGTCGCGTGACAGGCCAGGCCATGGAGCTGCTGAGCAGCGGCGCGTCCAGGATCAGCGTGACCAGGCTCTTTCTGTCCACGCCAGCGAAAGCGGCCGATCCGAAAAGGTTTCGGTCTACATCGTCCATGTCCAGTTACACTGAGCTGGCTCGGGAGCGGTCCAAAACTGTTACTTCTTTCTACAATCAGTCTGCCATTGACGCGTCTGCCGAGAAGCCTTCTGTTAGACTGACCCCAGCCACTATGCTGTATGCAGGGAAGTCTCCTGATGGACAACATATCCTGAGCAGTGCCAAGTATCTACACAAAGAGCTACCTGTTCGTATCGCCCACCGTATCAAGGGCTTCCGCAGCCTGCCCTTCATTATCGGCTGCAACCCAACCATTCTCCAAGTGCACGAGCTTTACATCAGGGCCTACCACATGCTGAGCGACTTCCCAGCTATAAAAGACCAGGAGACTGAGGCTCGGTACAGCAAACTTGTAAAACAGCTTCTTGATGATCACAAAGATGTTGTCACCATGTTGGCCGAAGGATTCAGGGAATGCCGTAAACACATAACGGACGAGACTTTGGTTCGTAATTTCTTGGACACCACGCTGACGTCTCGTCTGGGCATCCGCATGCTGGCCACACACCACATTGCCCTTCATGAGGATAACCCTGATTTTGTAGGCATTATATGCCGTCGCCTGTCCCCTAAAAAGATCATCGAGAAGTGGGTTGATTTTGCTCGGCGTCTCTGTGAGCATCAGTACGGGAACTCTCCACGGGTTCGCGTTAATGGCCATGTGGCGGCCCGCTTTCCCTTCATTCCACTGCCACTGGACTACATCCTGCCTGAGCTGCTGAAGAACGCCATGAGGGCCACAATGGAGAGTCACTTGGACACCCCTTACAATGTGCCTGATGTTTTGGTCACAATCGCCAACAATGACACAGACTTTGTCATAAGGATCTCAGACCGCGGCGGTGGCATTCCTCATACCATTTTGGATCAGGTGATGGATTACCACTTCAGCACGGCTGAACAGAGCACACAGGACCCCCGCATGAGCAACCTTTTCAACAGCATTACCAACAGCGGCCCCCAGTCCGGACCCATGCACGGGTTTGGCTTTGGTCTGCCTACGTCTCGGGCGTACGCCGAATACTTGGGGGGCTCCCTGGCCATCCAGTCGATGCAGGGCATCGGCACAGACGTCTACCTGCGTCTCCGACACATTGACGGCAAAGGAGAGAGCTTCAGAGTTTGATACCGTGGTCCGTTCATAGAGTTTTTGGTCCTTTTCTATACAGAAGATTTTAAGGCTCGAAGTCGAACCAAAAGCGGGATGTTCAGCAGTTGTCCTTTCACTCATATTACCCGTCACGGCATCAGTATCACATTTCGGATCACGTTTTCTGCAGATTATGGGTGTAATGCGTGCGAGTCGCACTGCGTTGTGTTTGTGTAGTGCACTGTGATTTCTGTAAAACTTTCAGCCTTAAGATTACAAAGTGATTTGATGATTAAAACCCATTGTGTTGCTGTCCACCGTCGGCAGTGGGACGAGTCCTTACACTCCAGACGCCTGCAGGAGACGCTCTTCAGTCAGCCATATTCTGCTTTTCTTCTGAAATAGGAGTGAATTGTTTGAACTTTTTGGAGATGCATGTTCGCTCCAGTGGCGAACGCAGAAAACTGCTAGTGAACACTGCATAGAGATCGACTGCCTTACGAAAAAGACTTGGTCAAAATATACCGTCTGTCTTGCTTTTGACATTTCACATTAACCGTATGAGCTTAAGAGTTTCTTGTAGATTTCATGCCTGAAGTTGTTTGCTAAAAAGGCCCCTGAGGTTATAGCACAGCGTAAAATAAACAtagctggggtttttttctttctctctccagcaAACGGTGGTTATAGAGATGTTCATGTTTgaatgggtgttttttttttaacgaccCACCTGCACATGTGGtcttttcatcattttgtttaGTTCATTTTCTAAAAGAATGCCAACTTGTTTGAGACTCTGCGAGACCATGAGATATATTTACCtgaattcatttgaaattgACCCCAGATGACAAAAGTTCAACTGAAATACCAATTGAACTGCTGGAGGAGTTCACAATACATGTAGTACAAGTAATCCATAACGTTTTGTCTTGTAATGTTGTGCCTGtggtttcttttctctctttttttgaatCGATTTTCAGGAGAAGGAGCCTTGGTGTGTTTCCTGCTCATCTGTTCTGGATTTGTTGCCCCAGTTTGCCCTCTACTGGTGCAATCTGAGTATTGACTTTTGACTTTTAAACCAATACAGACGTAATGATGAAGATTTAGTGTAATGAGTGATGTACAGTAGGTTCTGGATGATTCAGGAGAACTAACATGCACATATTAAGATATtcctttgtttatataaaaggcCAAATTGTGGCATGACGCACCCAGATTGATATCAAAGATGggatcattttattgtattttgttttcttttgatgttGAGTTTGCATTACATAGATGCCAAATACGCATAGCTTTTTTGGGCATTATAAAATTCTGGATGAGAa
>XM_043239120.1
GATAAACACCAGAAGAGACGGCTAATTTCACATCTAGAGACGTGATGGTGCCAGAGACGTGCCTTTGTGCACGAAAGAGCTCGCTGTGTCGGATGGCGAGGTAGACGGATTCTGAAACCAAGGGCAGGGGATTGAGTTTTCTTATTTCTGTTATCCAAGTGTAGAAATGCACGGTCGCGTGACAGGCCAGGCCATGGAGCTGCTGAGCAGCGGCGCGTCCAGGATCAGCGTGACCAGGCTCTTTCTGTCCACGCCAGCGAAAGCGGCCGATCCGAAAAGGTTTCGGTCTACATCGTCCATGTCCAGTTACACTGAGCTGGCTCGGGAGCGGTCCAAAACTGTTACTTCTTTCTACAATCAGTCTGCCATTGACGCGTCTGCCGAGAAGCCTTCTGTTAGACTGACCCCAGCCACTATGCTGTATGCAGGGAAGTCTCCTGATGGACAACATATCCTGCACGAGCTTTACATCAGGGCCTACCACATGCTGAGCGACTTCCCAGCTATAAAAGACCAGGAGACTGAGGCTCGGTACAGCAAACTTGTAAAACAGCTTCTTGATGATCACAAAGATGTTGTCACCATGTTGGCCGAAGGATTCAGGGAATGCCGTAAACACATAACGGACGAGACTTTGGTTCGTAATTTCTTGGACACCACGCTGACGTCTCGTCTGGGCATCCGCATGCTGGCCACACACCACATTGCCCTTCATGAGGATAACCCTGATTTTGTAGGCATTATATGCCGTCGCCTGTCCCCTAAAAAGATCATCGAGAAGTGGGTTGATTTTGCTCGGCGTCTCTGTGAGCATCAGTACGGGAACTCTCCACGGGTTCGCGTTAATGGCCATGTGGCGGCCCGCTTTCCCTTCATTCCACTGCCACTGGACTACATCCTGCCTGAGCTGCTGAAGAACGCCATGAGGGCCACAATGGAGAGTCACTTGGACACCCCTTACAATGTGCCTGATGTTTTGGTCACAATCGCCAACAATGACACAGACTTTGTCATAAGGATCTCAGACCGCGGCGGTGGCATTCCTCATACCATTTTGGATCAGGTGATGGATTACCACTTCAGCACGGCTGAACAGAGCACACAGGACCCCCGCATGAGCAACCTTTTCAACAGCATTACCAACAGCGGCCCCCAGTCCGGACCCATGCACGGGTTTGGCTTTGGTCTGCCTACGTCTCGGGCGTACGCCGAATACTTGGGGGGCTCCCTGGCCATCCAGTCGATGCAGGGCATCGGCACAGACGTCTACCTGCGTCTCCGACACATTGACGGCAAAGGAGAGAGCTTCAGAGTTTGATACCGTGGTCCGTTCATAGAGTTTTTGGTCCTTTTCTATACAGAAGATTTTAAGGCTCGAAGTCGAACCAAAAGCGGGATGTTCAGCAGTTGTCCTTTCACTCATATTACCCGTCACGGCATCAGTATCACATTTCGGATCACGTTTTCTGCAGATTATGGGTGTAATGCGTGCGAGTCGCACTGCGTTGTGTTTGTGTAGTGCACTGTGATTTCTGTAAAACTTTCAGCCTTAAGATTACAAAGTGATTTGATGATTAAAACCCATTGTGTTGCTGTCCACCGTCGGCAGTGGGACGAGTCCTTACACTCCAGACGCCTGCAGGAGACGCTCTTCAGTCAGCCATATTCTGCTTTTCTTCTGAAATAGGAGTGAATTGTTTGAACTTTTTGGAGATGCATGTTCGCTCCAGTGGCGAACGCAGAAAACTGCTAGTGAACACTGCATAGAGATCGACTGCCTTACGAAAAAGACTTGGTCAAAATATACCGTCTGTCTTGCTTTTGACATTTCACATTAACCGTATGAGCTTAAGAGTTTCTTGTAGATTTCATGCCTGAAGTTGTTTGCTAAAAAGGCCCCTGAGGTTATAGCACAGCGTAAAATAAACAtagctggggtttttttctttctctctccagcaAACGGTGGTTATAGAGATGTTCATGTTTgaatgggtgttttttttttaacgaccCACCTGCACATGTGGtcttttcatcattttgtttaGTTCATTTTCTAAAAGAATGCCAACTTGTTTGAGACTCTGCGAGACCATGAGATATATTTACCtgaattcatttgaaattgACCCCAGATGACAAAAGTTCAACTGAAATACCAATTGAACTGCTGGAGGAGTTCACAATACATGTAGTACAAGTAATCCATAACGTTTTGTCTTGTAATGTTGTGCCTGtggtttcttttctctctttttttgaatCGATTTTCAGGAGAAGGAGCCTTGGTGTGTTTCCTGCTCATCTGTTCTGGATTTGTTGCCCCAGTTTGCCCTCTACTGGTGCAATCTGAGTATTGACTTTTGACTTTTAAACCAATACAGACGTAATGATGAAGATTTAGTGTAATGAGTGATGTACAGTAGGTTCTGGATGATTCAGGAGAACTAACATGCACATATTAAGATATtcctttgtttatataaaaggcCAAATTGTGGCATGACGCACCCAGATTGATATCAAAGATGggatcattttattgtattttgttttcttttgatgttGAGTTTGCATTACATAGATGCCAAATACGCATAGCTTTTTTGGGCATTATAAAATTCTGGATGAGAa

Function

symbol description
bckdk Predicted to enable pyruvate dehydrogenase (acetyl-transferring) kinase activity. Predicted to be involved in protein phosphorylation and regulation of glucose metabolic process. Predicted to act upstream of or within phosphorylation. Predicted to be located in mitochondrial matrix. Predicted to be active in mitochondrion. Is expressed in several structures, including midbrain neural keel; midbrain neural rod; neural plate; pancreatic system; and primary neurons. Human ortholog(s) of this gene implicated in branched-chain keto acid dehydrogenase kinase deficiency. Orthologous to human BCKDK (branched chain keto acid dehydrogenase kinase).

NR:

description
3-methyl-2-oxobutanoate dehydrogenase [lipoamide] kinase, mitochondrial-like

GO:

id name namespace
GO:0016310 phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0016301 kinase activity molecular_function

KEGG:

id description
K00905 BCKDK; [3-methyl-2-oxobutanoate dehydrogenase (acetyl-transferring)] kinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043239119.1 True 2746 mRNA 0.47 11 21967987 21984217
XM_043239120.1 False 2637 mRNA 0.46 10 21967987 21984219

Neighbor

gene id symbol gene type direction distance location
orai2 orai2,LOC107685638,LOC107595471,LOC107710735,LOC107681896 coding downstream 851 21961430 ~ 21967136 (-)
LOC122346220 NA coding downstream 8103 21959785 ~ 21959884 (-)
ap2b1 ap2b1,LOC107681897,LOC107685655 coding downstream 14961 21925498 ~ 21953026 (-)
LOC122344852 rasl10b,LOC107685904,LOC107595522,LOC107681887,LOC107587740,LOC107710719 coding downstream 45914 21909774 ~ 21922073 (-)
hnrnpul1l hnrnpul1,hnrnpul1l,LOC107685667,LOC107681881,LOC107712123,LOC107587719,LOC107595510 coding downstream 71908 21886007 ~ 21896079 (-)
lrwd1 LOC107712122,LOC107587741,LOC107681902,LOC107710709 coding upstream 5726 21989945 ~ 21997417 (-)
alkbh4 alkbh4,LOC107712145,LOC107710716,LOC107681883 coding upstream 13417 21997636 ~ 21999412 (-)
polr2j polr2j,LOC107587688,LOC107595521,LOC107681903 coding upstream 15275 21999494 ~ 22001615 (-)
castor2 gatsl2,LOC107685562,LOC107587690,LOC107595468,LOC107681899 coding upstream 36448 22020667 ~ 22036314 (-)
doc2b doc2b,LOC107681901,LOC107685552,LOC106603746,LOC107587692 coding upstream 61080 22045299 ~ 22116025 (-)
G38523 NA non-coding downstream 91402 21867615 ~ 21876585 (-)
G38521 NA non-coding downstream 100526 21867128 ~ 21867461 (-)
LOC122345027 NA non-coding downstream 127887 21836313 ~ 21840100 (-)
G38515 LOC107712155,LOC107595525,LOC107685724 non-coding downstream 128314 21839359 ~ 21839673 (-)
G38510 sepw1,LOC107685796,LOC107587735 non-coding downstream 138255 21821476 ~ 21829732 (-)
G38543 NA non-coding upstream 24667 22008886 ~ 22010107 (-)
LOC122344815 NA non-coding upstream 54141 22038360 ~ 22041267 (-)
LOC122346224 NA non-coding upstream 55682 22039901 ~ 22040034 (-)
G38634 NA non-coding upstream 807471 22791690 ~ 22793053 (-)
G38658 nup88,LOC107691763,LOC107709758,LOC107600765,LOC107744326,LOC107664301 non-coding upstream 889752 22873971 ~ 22876437 (-)
LOC122344823 LOC107717639,LOC107712133,LOC107685828,LOC107710712,LOC107681889,LOC107575606,LOC107587718 other downstream 83965 21877081 ~ 21884022 (-)
akap10 akap10,LOC107595480,LOC107587677 other downstream 141882 21809013 ~ 21826105 (-)
G38355 abr,LOC107665039,LOC107595513,LOC107712163 other downstream 348404 21612688 ~ 21619583 (-)
G38359 NA other downstream 598939 21364238 ~ 21369048 (-)
LOC122345723 LOC107665045,LOC107595503,LOC107688632,LOC107731048,LOC107740809,LOC107740824 other downstream 1031890 20906043 ~ 20936097 (-)
nrgna nrgna other upstream 1142993 23127212 ~ 23132008 (-)
LOC122345364 NA other upstream 1618017 23602236 ~ 23605748 (-)
G38917 LOC107691721,LOC107751254,LOC107564048,LOC107721650,LOC107603186,LOC107663788 other upstream 1767661 23751880 ~ 23756588 (-)
G38973 NA other upstream 1903084 23887303 ~ 23887680 (-)
aatf LOC107695156,LOC107730321,LOC107600606,LOC107603183 other upstream 1995445 23979664 ~ 23997739 (-)

Expression


Co-expression Network